Wall clock time and date at job start Fri Apr 10 2020 18:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48495 * 109.47226 * 270.00100 * 3 2 1 5 5 H 1.48497 * 109.47261 * 30.00067 * 3 2 1 6 6 H 1.48501 * 109.47255 * 150.00399 * 3 2 1 7 7 C 1.38954 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99448 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00342 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00035 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00194 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99685 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46873 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99945 * 180.02562 * 13 12 10 15 15 O 1.21589 * 120.00121 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00044 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99705 * 359.97438 * 16 14 13 18 18 C 1.52999 * 109.47548 * 270.00127 * 17 16 14 19 19 O 1.42896 * 109.46948 * 65.00369 * 18 17 16 20 20 C 1.46503 * 120.00169 * 180.02562 * 16 14 13 21 21 C 1.53175 * 109.53763 * 300.44082 * 20 16 14 22 22 C 1.53092 * 109.16179 * 176.85076 * 21 20 16 23 23 O 1.42910 * 109.41107 * 302.39040 * 22 21 20 24 24 C 1.42900 * 114.09727 * 61.16189 * 23 22 21 25 25 C 1.53090 * 109.41229 * 298.83586 * 24 23 22 26 26 H 0.97002 * 120.00479 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99484 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47008 * 60.00484 * 12 10 9 29 29 H 1.08994 * 109.47535 * 300.00365 * 12 10 9 30 30 H 0.97005 * 120.00362 * 359.97438 * 13 12 10 31 31 H 1.08998 * 109.47158 * 30.01038 * 17 16 14 32 32 H 1.09010 * 109.46841 * 150.00061 * 17 16 14 33 33 H 1.09003 * 109.47129 * 185.00325 * 18 17 16 34 34 H 1.08997 * 109.46829 * 305.00192 * 18 17 16 35 35 H 0.96698 * 114.00101 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.61242 * 180.22461 * 20 16 14 37 37 H 1.09006 * 109.52647 * 296.75376 * 21 20 16 38 38 H 1.08998 * 109.52537 * 56.94268 * 21 20 16 39 39 H 1.08998 * 109.48147 * 182.40843 * 22 21 20 40 40 H 1.08997 * 109.48550 * 62.37144 * 22 21 20 41 41 H 1.09003 * 109.47953 * 178.86010 * 24 23 22 42 42 H 1.08995 * 109.49265 * 58.82602 * 24 23 22 43 43 H 1.09001 * 109.52724 * 297.70937 * 25 24 23 44 44 H 1.09000 * 109.52338 * 177.51272 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.6999 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5607 -2.3704 -0.0012 13 7 6.0491 -3.7516 -0.0003 14 6 7.3741 -3.9979 -0.0006 15 8 8.1642 -3.0737 -0.0011 16 7 7.8234 -5.2686 -0.0003 17 6 6.8714 -6.3821 0.0008 18 6 6.5409 -6.7691 1.4437 19 8 5.8588 -5.6881 2.0825 20 6 9.2638 -5.5363 -0.0001 21 6 9.9013 -4.9110 -1.2446 22 6 11.4160 -5.1276 -1.1961 23 8 11.9390 -4.5578 0.0056 24 6 11.4141 -5.1363 1.2022 25 6 9.8993 -4.9200 1.2500 26 1 -0.4851 0.8400 0.0004 27 1 3.8647 -0.3632 -0.0004 28 1 5.9247 -1.8562 0.8884 29 1 5.9234 -1.8570 -0.8916 30 1 5.4188 -4.4890 0.0012 31 1 5.9586 -6.0802 -0.5126 32 1 7.3115 -7.2369 -0.5129 33 1 5.9031 -7.6531 1.4458 34 1 7.4635 -6.9856 1.9822 35 1 5.6174 -5.8639 3.0022 36 1 9.4359 -6.6126 -0.0039 37 1 9.4943 -5.3833 -2.1388 38 1 9.6866 -3.8426 -1.2662 39 1 11.8797 -4.6476 -2.0578 40 1 11.6313 -6.1960 -1.2154 41 1 11.8764 -4.6625 2.0682 42 1 11.6293 -6.2048 1.2144 43 1 9.6846 -3.8518 1.2788 44 1 9.4909 -5.3988 2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682373664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:20 Heat of formation + Delta-G solvation = -146.472534 kcal Electronic energy + Delta-G solvation = -27682.979888 eV Core-core repulsion = 23636.170857 eV Total energy + Delta-G solvation = -4046.809030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.66196 -38.99204 -38.25026 -37.10572 -35.42565 -34.43697 -33.76168 -32.24693 -31.71184 -31.24814 -29.08135 -27.61387 -24.91882 -23.92337 -23.70115 -22.96600 -20.92381 -19.64425 -19.45082 -18.58761 -17.73203 -17.60370 -16.62386 -16.28346 -15.73055 -15.67546 -15.44091 -14.96017 -14.89719 -14.63841 -14.44801 -14.19682 -13.90299 -13.84119 -13.62672 -13.14062 -12.99410 -12.56519 -12.49019 -12.28596 -12.07470 -12.05759 -11.80026 -11.65490 -11.28027 -11.17642 -11.00686 -10.59353 -10.55473 -10.16299 -10.01111 -9.89632 -9.63036 -9.47129 -8.82853 -8.66482 -8.40321 -8.23554 -6.35447 -3.87423 2.67594 3.04454 3.08878 3.16346 3.43403 3.67362 3.72934 4.02121 4.08927 4.11715 4.59568 4.61108 4.71753 4.81983 4.85000 4.92774 4.95712 5.06168 5.14772 5.20088 5.20181 5.22798 5.34270 5.43712 5.49640 5.59471 5.74396 5.75525 5.85937 5.90335 5.97894 6.17473 6.23006 6.63285 6.87620 7.03442 7.08176 7.51483 7.56992 8.07096 8.28796 8.51740 8.87760 8.90259 9.36642 9.72109 10.77032 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.003175 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.577690 B = 8815.506363 C = 9655.931409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.307 4.307 8 H 0.121 0.879 9 N -0.580 5.580 10 C 0.443 3.557 11 O -0.575 6.575 12 C 0.126 3.874 13 N -0.712 5.712 14 C 0.716 3.284 15 O -0.595 6.595 16 N -0.625 5.625 17 C 0.107 3.893 18 C 0.055 3.945 19 O -0.556 6.556 20 C 0.173 3.827 21 C -0.177 4.177 22 C 0.068 3.932 23 O -0.381 6.381 24 C 0.067 3.933 25 C -0.174 4.174 26 H 0.275 0.725 27 H 0.374 0.626 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.411 0.589 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.379 0.621 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.101 0.899 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.645 -14.062 1.463 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.436 4.436 8 H 0.138 0.862 9 N -0.219 5.219 10 C 0.229 3.771 11 O -0.459 6.459 12 C -0.003 4.003 13 N -0.371 5.371 14 C 0.417 3.583 15 O -0.475 6.475 16 N -0.361 5.361 17 C -0.017 4.017 18 C -0.024 4.024 19 O -0.361 6.361 20 C 0.069 3.931 21 C -0.215 4.215 22 C -0.010 4.010 23 O -0.300 6.300 24 C -0.010 4.010 25 C -0.212 4.212 26 H 0.085 0.915 27 H 0.207 0.793 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.226 0.774 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.751 -13.535 0.864 24.790 hybrid contribution -0.215 0.378 0.645 0.778 sum 20.536 -13.157 1.508 24.436 Atomic orbital electron populations 1.69614 1.05700 1.27694 1.48721 1.25046 0.95510 0.98107 0.97293 0.86678 0.79945 0.83819 0.79101 1.19452 1.20072 1.19204 1.19428 0.79042 0.96715 1.48414 0.86171 1.42119 1.07619 1.06136 1.65979 1.19691 0.88180 0.84793 0.84476 1.90531 1.69281 1.30911 1.55178 1.20757 0.93229 0.83446 1.02837 1.44844 1.05365 1.09012 1.77867 1.15665 0.82617 0.82517 0.77468 1.90830 1.54964 1.42808 1.58864 1.47050 1.05565 1.04363 1.79171 1.21669 0.93957 0.90477 0.95552 1.22659 0.95631 0.89864 0.94261 1.86624 1.78656 1.40618 1.30244 1.20788 0.78690 0.98438 0.95143 1.22726 0.95655 1.05490 0.97664 1.22518 0.93088 0.97491 0.87856 1.87946 1.65936 1.62355 1.13715 1.22523 0.93145 0.97349 0.87984 1.22695 0.95501 1.05442 0.97585 0.91489 0.79310 0.90180 0.90242 0.74879 0.89485 0.88948 0.92832 0.93762 0.77423 0.90132 0.91191 0.87960 0.88819 0.93605 0.88881 0.93645 0.88053 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.41 13.96 55.50 0.77 -24.64 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.42 27.74 -169.99 -4.71 14.71 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 7 C -0.31 -8.62 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 9 N -0.58 -13.88 5.09 -10.96 -0.06 -13.94 16 10 C 0.44 10.12 7.85 -10.98 -0.09 10.03 16 11 O -0.58 -14.94 15.24 5.55 0.08 -14.86 16 12 C 0.13 2.36 6.15 -5.19 -0.03 2.32 16 13 N -0.71 -12.45 4.79 -66.41 -0.32 -12.77 16 14 C 0.72 11.74 7.31 -86.92 -0.64 11.10 16 15 O -0.59 -11.18 12.49 5.29 0.07 -11.12 16 16 N -0.62 -7.69 2.41 -171.59 -0.41 -8.11 16 17 C 0.11 1.05 5.68 -4.04 -0.02 1.03 16 18 C 0.06 0.49 7.39 37.16 0.27 0.77 16 19 O -0.56 -6.74 11.78 -35.23 -0.42 -7.15 16 20 C 0.17 1.82 2.64 -67.75 -0.18 1.64 16 21 C -0.18 -1.94 5.38 -26.59 -0.14 -2.08 16 22 C 0.07 0.64 6.84 37.21 0.25 0.89 16 23 O -0.38 -4.45 10.77 -35.23 -0.38 -4.83 16 24 C 0.07 0.64 6.84 37.20 0.25 0.89 16 25 C -0.17 -1.93 5.39 -26.59 -0.14 -2.07 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.37 7.96 5.76 -40.82 -0.24 7.72 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.41 7.32 4.37 -40.82 -0.18 7.14 16 31 H 0.09 0.99 6.36 -51.93 -0.33 0.66 16 32 H 0.09 0.60 7.92 -51.92 -0.41 0.19 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 3.17 9.12 45.56 0.42 3.58 16 36 H 0.08 0.63 7.80 -51.93 -0.41 0.22 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.10 1.50 6.07 -51.93 -0.32 1.19 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 1.52 6.10 -51.93 -0.32 1.20 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -35.09 352.76 -6.32 -41.41 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -5.56 Total: 19.11 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: -0.71 Total: 16.85 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.01 Total: -59.45 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.64 Total: -37.96 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.09 -6.32 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682373664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.058 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds