Wall clock time and date at job start Fri Apr 10 2020 18:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48495 * 109.47226 * 270.00100 * 3 2 1 5 5 H 1.48497 * 109.47261 * 30.00067 * 3 2 1 6 6 H 1.48501 * 109.47255 * 150.00399 * 3 2 1 7 7 C 1.38954 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99448 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00342 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00035 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00194 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99685 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46873 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99945 * 180.02562 * 13 12 10 15 15 O 1.21589 * 120.00121 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00044 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99705 * 359.97438 * 16 14 13 18 18 C 1.52999 * 109.47548 * 270.00127 * 17 16 14 19 19 O 1.42896 * 109.46948 * 65.00369 * 18 17 16 20 20 C 1.46503 * 120.00169 * 180.02562 * 16 14 13 21 21 C 1.53175 * 109.53763 * 300.44082 * 20 16 14 22 22 C 1.53092 * 109.16179 * 176.85076 * 21 20 16 23 23 O 1.42910 * 109.41107 * 302.39040 * 22 21 20 24 24 C 1.42900 * 114.09727 * 61.16189 * 23 22 21 25 25 C 1.53090 * 109.41229 * 298.83586 * 24 23 22 26 26 H 0.97002 * 120.00479 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99484 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47008 * 60.00484 * 12 10 9 29 29 H 1.08994 * 109.47535 * 300.00365 * 12 10 9 30 30 H 0.97005 * 120.00362 * 359.97438 * 13 12 10 31 31 H 1.08998 * 109.47158 * 30.01038 * 17 16 14 32 32 H 1.09010 * 109.46841 * 150.00061 * 17 16 14 33 33 H 1.09003 * 109.47129 * 185.00325 * 18 17 16 34 34 H 1.08997 * 109.46829 * 305.00192 * 18 17 16 35 35 H 0.96698 * 114.00101 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.61242 * 180.22461 * 20 16 14 37 37 H 1.09006 * 109.52647 * 296.75376 * 21 20 16 38 38 H 1.08998 * 109.52537 * 56.94268 * 21 20 16 39 39 H 1.08998 * 109.48147 * 182.40843 * 22 21 20 40 40 H 1.08997 * 109.48550 * 62.37144 * 22 21 20 41 41 H 1.09003 * 109.47953 * 178.86010 * 24 23 22 42 42 H 1.08995 * 109.49265 * 58.82602 * 24 23 22 43 43 H 1.09001 * 109.52724 * 297.70937 * 25 24 23 44 44 H 1.09000 * 109.52338 * 177.51272 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.6999 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5607 -2.3704 -0.0012 13 7 6.0491 -3.7516 -0.0003 14 6 7.3741 -3.9979 -0.0006 15 8 8.1642 -3.0737 -0.0011 16 7 7.8234 -5.2686 -0.0003 17 6 6.8714 -6.3821 0.0008 18 6 6.5409 -6.7691 1.4437 19 8 5.8588 -5.6881 2.0825 20 6 9.2638 -5.5363 -0.0001 21 6 9.9013 -4.9110 -1.2446 22 6 11.4160 -5.1276 -1.1961 23 8 11.9390 -4.5578 0.0056 24 6 11.4141 -5.1363 1.2022 25 6 9.8993 -4.9200 1.2500 26 1 -0.4851 0.8400 0.0004 27 1 3.8647 -0.3632 -0.0004 28 1 5.9247 -1.8562 0.8884 29 1 5.9234 -1.8570 -0.8916 30 1 5.4188 -4.4890 0.0012 31 1 5.9586 -6.0802 -0.5126 32 1 7.3115 -7.2369 -0.5129 33 1 5.9031 -7.6531 1.4458 34 1 7.4635 -6.9856 1.9822 35 1 5.6174 -5.8639 3.0022 36 1 9.4359 -6.6126 -0.0039 37 1 9.4943 -5.3833 -2.1388 38 1 9.6866 -3.8426 -1.2662 39 1 11.8797 -4.6476 -2.0578 40 1 11.6313 -6.1960 -1.2154 41 1 11.8764 -4.6625 2.0682 42 1 11.6293 -6.2048 1.2144 43 1 9.6846 -3.8518 1.2788 44 1 9.4909 -5.3988 2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682373664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:20 Heat of formation + Delta-G solvation = -176.766524 kcal Electronic energy + Delta-G solvation = -27684.293534 eV Core-core repulsion = 23636.170857 eV Total energy + Delta-G solvation = -4048.122676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74137 -40.42856 -39.57846 -38.02195 -36.48518 -36.15678 -35.32789 -33.83388 -33.17953 -32.00833 -30.04822 -29.09619 -26.45870 -25.12496 -24.50666 -23.87242 -21.82540 -21.37400 -20.87204 -20.38469 -18.88382 -18.49109 -17.59436 -17.41547 -17.15771 -16.92954 -16.65110 -16.50822 -15.96514 -15.73655 -15.61517 -15.44028 -15.11193 -14.87001 -14.80834 -14.52523 -14.28473 -14.04940 -13.89265 -13.64877 -13.23910 -13.17753 -12.96755 -12.66710 -12.46384 -12.44606 -12.10619 -12.00438 -11.81102 -11.57551 -11.37944 -10.99505 -10.79512 -10.61791 -10.43018 -10.31959 -10.10022 -9.47413 -8.45288 -6.06577 1.30943 1.33539 1.42984 1.59877 1.80443 2.20226 2.22421 2.68878 3.02491 3.09142 3.11429 3.44474 3.80664 3.85271 4.01616 4.06786 4.08050 4.19324 4.25093 4.36791 4.38814 4.43933 4.46086 4.52907 4.57960 4.64221 4.71723 4.80302 4.87006 4.93278 5.09804 5.26544 5.31311 5.41699 5.54786 5.77464 5.88722 5.95841 6.32914 6.50256 6.78841 6.91357 7.04781 7.29547 7.64786 7.79810 8.71330 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.003175 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.577690 B = 8815.506363 C = 9655.931409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.007 4.007 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.236 1.236 7 C -0.329 4.329 8 H 0.064 0.936 9 N -0.580 5.580 10 C 0.449 3.551 11 O -0.609 6.609 12 C 0.139 3.861 13 N -0.718 5.718 14 C 0.711 3.289 15 O -0.623 6.623 16 N -0.616 5.616 17 C 0.100 3.900 18 C 0.054 3.946 19 O -0.592 6.592 20 C 0.168 3.832 21 C -0.174 4.174 22 C 0.068 3.932 23 O -0.408 6.408 24 C 0.068 3.932 25 C -0.169 4.169 26 H 0.281 0.719 27 H 0.390 0.610 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.409 0.591 31 H 0.065 0.935 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.391 0.609 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.528 -14.874 1.507 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.207 4.207 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.160 1.160 7 C -0.458 4.458 8 H 0.082 0.918 9 N -0.220 5.220 10 C 0.236 3.764 11 O -0.495 6.495 12 C 0.010 3.990 13 N -0.377 5.377 14 C 0.413 3.587 15 O -0.505 6.505 16 N -0.352 5.352 17 C -0.023 4.023 18 C -0.024 4.024 19 O -0.399 6.399 20 C 0.065 3.935 21 C -0.212 4.212 22 C -0.009 4.009 23 O -0.327 6.327 24 C -0.009 4.009 25 C -0.207 4.207 26 H 0.091 0.909 27 H 0.226 0.774 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.249 0.751 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.239 0.761 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.665 -14.397 0.917 27.715 hybrid contribution -1.140 0.475 0.631 1.387 sum 22.525 -13.922 1.548 26.525 Atomic orbital electron populations 1.69770 1.07948 1.29407 1.49520 1.26023 0.96411 1.02450 0.95798 0.85461 0.79491 0.77207 0.80072 1.18064 1.19656 1.15959 1.19026 0.80896 0.95272 1.50633 0.91821 1.41925 1.06151 1.07312 1.66645 1.20456 0.89932 0.83877 0.82109 1.90514 1.70692 1.32260 1.55988 1.20605 0.89461 0.84866 1.04088 1.44846 1.06000 1.08228 1.78645 1.15848 0.81758 0.83789 0.77348 1.90826 1.55336 1.44275 1.60041 1.47123 1.06868 1.03444 1.77718 1.21981 0.92978 0.90728 0.96620 1.22796 0.96575 0.89617 0.93442 1.86583 1.79280 1.42555 1.31498 1.21084 0.77243 1.00645 0.94524 1.22650 0.97247 1.02810 0.98517 1.22636 0.91630 0.99305 0.87327 1.87915 1.66355 1.63582 1.14894 1.22632 0.91639 0.99157 0.87488 1.22596 0.97122 1.02622 0.98386 0.90926 0.77388 0.89079 0.88602 0.75102 0.91622 0.84802 0.90753 0.92033 0.76051 0.85914 0.90018 0.92319 0.88412 0.90441 0.88540 0.90459 0.92568 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.96 21.66 0.30 -54.88 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 3 Si 0.96 39.29 27.74 68.60 1.90 41.20 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.24 -8.45 6.52 99.48 0.65 -7.80 16 7 C -0.33 -19.15 10.16 84.04 0.85 -18.30 16 8 H 0.06 4.34 7.39 -2.91 -0.02 4.32 16 9 N -0.58 -27.90 5.09 -306.99 -1.56 -29.46 16 10 C 0.45 20.81 7.85 87.66 0.69 21.50 16 11 O -0.61 -32.80 15.24 -3.06 -0.05 -32.85 16 12 C 0.14 5.13 6.15 85.63 0.53 5.65 16 13 N -0.72 -25.11 4.79 -482.30 -2.31 -27.42 16 14 C 0.71 23.09 7.31 179.05 1.31 24.40 16 15 O -0.62 -23.66 12.49 -4.00 -0.05 -23.71 16 16 N -0.62 -14.14 2.41 -815.03 -1.97 -16.10 16 17 C 0.10 1.71 5.68 86.38 0.49 2.21 16 18 C 0.05 0.84 7.39 71.98 0.53 1.37 16 19 O -0.59 -13.93 11.78 -148.98 -1.76 -15.69 16 20 C 0.17 3.08 2.64 45.11 0.12 3.20 16 21 C -0.17 -3.52 5.38 30.68 0.17 -3.35 16 22 C 0.07 1.10 6.84 72.01 0.49 1.60 16 23 O -0.41 -8.82 10.77 -148.98 -1.60 -10.42 16 24 C 0.07 1.11 6.84 72.01 0.49 1.61 16 25 C -0.17 -3.47 5.39 30.68 0.17 -3.30 16 26 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.39 16.01 5.76 -92.70 -0.53 15.48 16 28 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.41 14.75 4.37 -92.70 -0.40 14.35 16 31 H 0.07 1.44 6.36 -2.39 -0.02 1.43 16 32 H 0.13 1.17 7.92 -2.38 -0.02 1.15 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.39 6.37 9.12 -74.06 -0.68 5.70 16 36 H 0.12 1.28 7.80 -2.39 -0.02 1.26 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.06 1.74 6.07 -2.39 -0.01 1.73 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 1.70 6.10 -2.39 -0.01 1.69 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -81.83 352.76 -1.41 -83.24 By element: Atomic # 1 Polarization: 50.06 SS G_CDS: -0.62 Total: 49.44 kcal Atomic # 6 Polarization: 30.35 SS G_CDS: 6.30 Total: 36.66 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -5.54 Total: -127.87 kcal Atomic # 8 Polarization: -79.21 SS G_CDS: -3.46 Total: -82.66 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.20 kcal Total: -81.83 -1.41 -83.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682373664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.527 kcal (2) G-P(sol) polarization free energy of solvation -81.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds