Wall clock time and date at job start Fri Apr 10 2020 18:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99982 * 3 2 1 5 5 H 1.48505 * 109.47151 * 29.99626 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00160 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 H 1.09008 * 109.46846 * 325.00097 * 17 16 14 19 19 C 1.52996 * 109.47098 * 85.00044 * 17 16 14 20 20 O 1.42897 * 109.47108 * 65.00300 * 19 17 16 21 21 C 1.52998 * 109.47391 * 205.00423 * 17 16 14 22 22 C 1.53178 * 109.54476 * 179.82114 * 21 17 16 23 23 C 1.53098 * 109.15959 * 183.24066 * 22 21 17 24 24 O 1.42900 * 109.48789 * 57.47451 * 23 22 21 25 25 C 1.42909 * 114.09796 * 298.89137 * 24 23 22 26 26 C 1.53086 * 109.41376 * 61.15702 * 25 24 23 27 27 H 0.96990 * 120.00229 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 30 30 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 31 31 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 32 32 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 33 33 H 1.09004 * 109.47336 * 185.00822 * 19 17 16 34 34 H 1.08995 * 109.47105 * 304.99924 * 19 17 16 35 35 H 0.96698 * 114.00041 * 180.02562 * 20 19 17 36 36 H 1.08994 * 109.54069 * 299.99579 * 21 17 16 37 37 H 1.09007 * 109.52421 * 303.05710 * 22 21 17 38 38 H 1.09001 * 109.52032 * 63.24269 * 22 21 17 39 39 H 1.08999 * 109.40477 * 297.49316 * 23 22 21 40 40 H 1.09004 * 109.49529 * 177.50903 * 23 22 21 41 41 H 1.09003 * 109.47793 * 301.17629 * 25 24 23 42 42 H 1.08998 * 109.48065 * 181.14197 * 25 24 23 43 43 H 1.09002 * 109.52038 * 182.49224 * 26 25 24 44 44 H 1.09000 * 109.57556 * 62.32890 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2105 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1962 -5.9763 -0.0016 14 6 1.7470 -7.2471 -0.0017 15 8 0.5516 -7.4693 -0.0018 16 7 2.6228 -8.2714 0.0035 17 6 2.1346 -9.6527 0.0095 18 1 1.2195 -9.7120 0.5987 19 6 1.8470 -10.0981 -1.4257 20 8 3.0678 -10.1319 -2.1676 21 6 3.1969 -10.5664 0.6239 22 6 2.6862 -12.0105 0.6351 23 6 3.7209 -12.9040 1.3244 24 8 3.9634 -12.4198 2.6468 25 6 4.4876 -11.0912 2.6947 26 6 3.4829 -10.1246 2.0625 27 1 -0.4850 0.8399 -0.0004 28 1 0.3535 -2.3907 -0.0005 29 1 0.6177 -4.9205 -0.8913 30 1 0.6171 -4.9209 0.8886 31 1 3.1498 -5.7991 -0.0012 32 1 3.5765 -8.0941 0.0033 33 1 1.4006 -11.0925 -1.4149 34 1 1.1572 -9.3954 -1.8928 35 1 2.9608 -10.4062 -3.0887 36 1 4.1125 -10.5080 0.0356 37 1 1.7436 -12.0594 1.1803 38 1 2.5337 -12.3508 -0.3892 39 1 4.6502 -12.8875 0.7551 40 1 3.3435 -13.9254 1.3748 41 1 5.4271 -11.0510 2.1433 42 1 4.6625 -10.8066 3.7322 43 1 3.8996 -9.1174 2.0581 44 1 2.5567 -10.1331 2.6371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686402716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:01 Heat of formation + Delta-G solvation = -202.352140 kcal Electronic energy + Delta-G solvation = -26568.782838 eV Core-core repulsion = 22519.550686 eV Total energy + Delta-G solvation = -4049.232152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.48582 -40.49423 -39.89108 -38.20421 -36.27636 -36.06080 -35.25534 -33.98266 -33.35642 -32.04393 -30.25430 -28.67540 -26.41096 -25.96418 -24.37594 -22.84580 -21.65902 -21.35455 -21.13648 -20.11165 -19.51329 -18.29450 -17.72834 -17.40528 -16.97597 -16.89152 -16.83162 -16.49139 -16.12937 -15.90289 -15.63665 -15.57362 -15.40990 -15.14253 -14.91367 -14.46657 -13.95678 -13.81475 -13.57926 -13.53472 -13.39398 -13.17893 -12.91083 -12.71042 -12.45878 -12.23891 -12.12856 -11.88384 -11.59881 -11.57129 -11.39319 -11.18038 -10.88615 -10.56282 -10.53325 -10.34024 -10.10240 -9.80230 -8.51100 -6.01359 1.36363 1.42324 1.53717 1.61117 1.89680 2.11844 2.28533 2.99575 3.04018 3.16084 3.29595 3.39760 3.54423 3.79147 3.88326 4.08581 4.20945 4.25418 4.32589 4.39018 4.41959 4.45730 4.46453 4.54195 4.62094 4.73245 4.81695 4.83129 4.92112 4.95252 5.15386 5.17851 5.31235 5.37977 5.39357 5.55405 5.91443 5.96681 6.30011 6.48032 6.87944 7.02504 7.03400 7.42642 7.53723 7.94399 8.65866 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026485 B = 0.002294 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.946371 B =12202.614390 C =12655.633626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.143 3.857 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.632 6.632 16 N -0.721 5.721 17 C 0.172 3.828 18 H 0.084 0.916 19 C 0.067 3.933 20 O -0.576 6.576 21 C -0.081 4.081 22 C -0.143 4.143 23 C 0.059 3.941 24 O -0.406 6.406 25 C 0.061 3.939 26 C -0.151 4.151 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.409 0.591 32 H 0.407 0.593 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.394 0.606 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 -24.921 -0.689 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.514 6.514 16 N -0.375 5.375 17 C 0.066 3.934 18 H 0.102 0.898 19 C -0.012 4.012 20 O -0.384 6.384 21 C -0.100 4.100 22 C -0.181 4.181 23 C -0.018 4.018 24 O -0.325 6.325 25 C -0.015 4.015 26 C -0.188 4.188 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.247 0.753 32 H 0.243 0.757 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.243 0.757 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.199 -24.855 0.051 25.393 hybrid contribution 0.143 1.321 -0.800 1.551 sum 5.342 -23.534 -0.750 24.144 Atomic orbital electron populations 1.69679 1.07005 1.29639 1.49319 1.26138 0.96549 1.02701 0.95811 0.84865 0.77908 0.76471 0.78718 1.19540 1.19650 1.19445 1.19730 0.92950 0.83528 1.50369 0.89584 1.41839 1.09597 1.04597 1.63484 1.20420 0.88113 0.85904 0.83475 1.90469 1.15181 1.87557 1.57989 1.20567 0.90985 0.83096 1.03949 1.44696 1.10937 1.03324 1.79258 1.15947 0.85176 0.80759 0.77575 1.90873 1.15518 1.84676 1.60295 1.44922 1.09108 1.04389 1.79121 1.21024 0.98170 0.79119 0.95038 0.89803 1.22562 0.86450 1.00282 0.91902 1.86407 1.31469 1.92110 1.28409 1.21278 0.98734 0.94474 0.95509 1.22213 0.99727 0.93611 1.02584 1.22711 0.98001 0.98170 0.82893 1.87910 1.85086 1.30795 1.28695 1.22636 0.95291 0.81474 1.02129 1.22229 1.00569 1.00054 0.95991 0.91065 0.76697 0.89176 0.89081 0.75347 0.75736 0.90341 0.95313 0.75669 0.89235 0.91341 0.88882 0.92307 0.87502 0.92120 0.88393 0.90710 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.79 29.55 68.60 2.03 43.81 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.23 5.29 -306.98 -1.62 -29.86 16 10 C 0.43 20.13 7.85 87.66 0.69 20.82 16 11 O -0.62 -32.31 15.24 -3.08 -0.05 -32.36 16 12 C 0.14 5.30 6.15 85.63 0.53 5.83 16 13 N -0.72 -24.20 5.53 -482.29 -2.67 -26.87 16 14 C 0.71 22.40 8.53 179.06 1.53 23.93 16 15 O -0.63 -24.00 16.01 -4.01 -0.06 -24.07 16 16 N -0.72 -16.86 4.40 -457.81 -2.01 -18.87 16 17 C 0.17 3.38 1.95 44.99 0.09 3.47 16 18 H 0.08 1.96 7.58 -2.38 -0.02 1.94 16 19 C 0.07 1.16 6.35 71.98 0.46 1.62 16 20 O -0.58 -8.89 12.73 -148.98 -1.90 -10.79 16 21 C -0.08 -1.22 1.71 -10.67 -0.02 -1.24 16 22 C -0.14 -1.76 4.98 30.69 0.15 -1.60 16 23 C 0.06 0.72 6.84 72.01 0.49 1.22 16 24 O -0.41 -7.22 10.77 -148.98 -1.60 -8.82 16 25 C 0.06 0.92 6.84 72.01 0.49 1.41 16 26 C -0.15 -2.46 5.22 30.68 0.16 -2.30 16 27 H 0.28 13.93 8.31 -92.72 -0.77 13.16 16 28 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 29 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.41 13.41 7.45 -92.71 -0.69 12.72 16 32 H 0.41 8.19 8.43 -92.71 -0.78 7.41 16 33 H 0.08 0.96 6.79 -2.39 -0.02 0.95 16 34 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.39 3.05 9.12 -74.06 -0.68 2.37 16 36 H 0.09 1.37 7.56 -2.39 -0.02 1.35 16 37 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.09 0.87 6.74 -2.39 -0.02 0.85 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.24 7.58 -2.39 -0.02 1.22 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.12 363.38 -3.57 -73.68 By element: Atomic # 1 Polarization: 49.20 SS G_CDS: -1.81 Total: 47.39 kcal Atomic # 6 Polarization: 29.42 SS G_CDS: 5.85 Total: 35.26 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -6.02 Total: -124.12 kcal Atomic # 8 Polarization: -72.42 SS G_CDS: -3.61 Total: -76.03 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -70.12 -3.57 -73.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686402716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.670 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds