Wall clock time and date at job start Fri Apr 10 2020 18:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 119.99233 * 2 1 4 4 H 1.48493 * 109.47173 * 270.00034 * 3 2 1 5 5 H 1.48497 * 109.47258 * 30.00564 * 3 2 1 6 6 H 1.48505 * 109.46744 * 149.99958 * 3 2 1 7 7 C 1.38941 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00225 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00088 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00039 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00144 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00225 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47427 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00056 * 180.02562 * 13 12 10 15 15 O 1.21585 * 119.99880 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99906 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99891 * 179.97438 * 16 14 13 18 18 H 1.08993 * 109.47015 * 35.00565 * 17 16 14 19 19 C 1.53008 * 109.47294 * 275.00151 * 17 16 14 20 20 O 1.42900 * 109.46878 * 295.47561 * 19 17 16 21 21 C 1.53005 * 109.47110 * 155.00502 * 17 16 14 22 22 C 1.53188 * 109.53911 * 303.34744 * 21 17 16 23 23 C 1.53092 * 109.15945 * 183.15383 * 22 21 17 24 24 O 1.42904 * 109.41520 * 57.60787 * 23 22 21 25 25 C 1.42905 * 114.09943 * 298.83830 * 24 23 22 26 26 C 1.53094 * 109.41202 * 61.15926 * 25 24 23 27 27 H 0.97001 * 120.00908 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99919 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47049 * 59.99998 * 12 10 9 30 30 H 1.09007 * 109.46918 * 300.00182 * 12 10 9 31 31 H 0.96999 * 119.99689 * 359.97438 * 13 12 10 32 32 H 0.97002 * 119.99817 * 0.02562 * 16 14 13 33 33 H 1.09006 * 109.46504 * 55.47500 * 19 17 16 34 34 H 1.08994 * 109.46895 * 175.47309 * 19 17 16 35 35 H 0.96696 * 113.99643 * 179.97438 * 20 19 17 36 36 H 1.08991 * 109.54226 * 63.61349 * 21 17 16 37 37 H 1.08997 * 109.52090 * 303.05512 * 22 21 17 38 38 H 1.08996 * 109.51954 * 63.24576 * 22 21 17 39 39 H 1.09003 * 109.48248 * 297.62621 * 23 22 21 40 40 H 1.08994 * 109.48069 * 177.59179 * 23 22 21 41 41 H 1.08999 * 109.48298 * 301.18189 * 25 24 23 42 42 H 1.08999 * 109.48209 * 181.13985 * 25 24 23 43 43 H 1.08999 * 109.52511 * 182.48648 * 26 25 24 44 44 H 1.09001 * 109.51993 * 62.29554 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2479 1.6179 0.0000 4 1 2.4953 2.0466 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2031 -0.0011 10 6 4.0539 -2.3702 -0.0011 11 8 3.4475 -3.4207 -0.0011 12 6 5.5609 -2.3701 -0.0022 13 7 6.0493 -3.7513 -0.0026 14 6 7.3744 -3.9975 -0.0031 15 8 8.1644 -3.0732 -0.0037 16 7 7.8238 -5.2681 -0.0029 17 6 9.2641 -5.5357 -0.0041 18 1 9.7755 -4.7742 0.5847 19 6 9.7874 -5.5058 -1.4416 20 8 9.1946 -6.5716 -2.1864 21 6 9.5273 -6.9140 0.6059 22 6 8.9301 -6.9731 2.0153 23 6 9.2662 -8.3264 2.6471 24 8 10.6843 -8.5015 2.6688 25 6 11.2920 -8.5025 1.3754 26 6 11.0373 -7.1561 0.6925 27 1 -0.4851 0.8400 0.0004 28 1 3.8648 -0.3630 -0.0014 29 1 5.9248 -1.8559 0.8873 30 1 5.9235 -1.8566 -0.8928 31 1 5.4190 -4.4886 -0.0018 32 1 7.1935 -6.0054 -0.0028 33 1 9.5287 -4.5525 -1.9026 34 1 10.8708 -5.6248 -1.4364 35 1 9.4811 -6.6134 -3.1090 36 1 9.0700 -7.6820 -0.0178 37 1 9.3515 -6.1726 2.6233 38 1 7.8479 -6.8567 1.9575 39 1 8.8104 -9.1245 2.0609 40 1 8.8805 -8.3578 3.6660 41 1 10.8627 -9.3027 0.7726 42 1 12.3656 -8.6605 1.4782 43 1 11.4620 -7.1707 -0.3113 44 1 11.5013 -6.3593 1.2738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686402717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:07 Heat of formation + Delta-G solvation = -166.498316 kcal Electronic energy + Delta-G solvation = -26632.456484 eV Core-core repulsion = 22584.779071 eV Total energy + Delta-G solvation = -4047.677413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.48569 -39.48180 -38.43731 -37.39774 -35.35719 -34.47332 -33.73249 -33.07582 -31.79821 -31.44730 -29.34116 -27.39045 -25.38205 -24.34456 -23.73318 -21.91798 -20.60987 -20.39642 -19.64406 -18.84025 -18.11908 -17.57785 -16.77796 -16.32634 -16.11431 -15.67164 -15.56715 -15.14032 -15.01025 -14.94330 -14.78816 -14.35713 -14.09295 -13.87654 -13.81196 -13.16250 -12.94732 -12.75680 -12.60077 -12.47720 -12.19440 -12.15437 -11.93066 -11.65817 -11.23977 -11.19555 -10.92089 -10.64477 -10.58837 -10.29856 -10.08274 -10.05119 -9.83994 -9.70054 -9.20194 -8.76883 -8.68912 -8.30636 -6.40939 -3.93587 2.71725 2.99503 3.04154 3.12324 3.30503 3.56793 3.57606 4.02772 4.03539 4.18929 4.27534 4.44226 4.49653 4.62206 4.67409 4.88461 4.97564 5.03000 5.09963 5.14080 5.17575 5.25782 5.35800 5.38178 5.48796 5.56910 5.57517 5.67506 5.75777 5.78299 5.81738 5.85256 6.06670 6.47625 6.64123 6.87593 7.05307 7.34913 7.44869 8.00154 8.17587 8.44272 8.72526 8.81584 9.29702 9.63484 10.71224 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002405 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.094580 B =11638.682234 C =12017.776750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.127 3.873 13 N -0.724 5.724 14 C 0.706 3.294 15 O -0.602 6.602 16 N -0.736 5.736 17 C 0.177 3.823 18 H 0.100 0.900 19 C 0.060 3.940 20 O -0.568 6.568 21 C -0.093 4.093 22 C -0.151 4.151 23 C 0.061 3.939 24 O -0.385 6.385 25 C 0.062 3.938 26 C -0.148 4.148 27 H 0.275 0.725 28 H 0.374 0.626 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.408 0.592 32 H 0.399 0.601 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.377 0.623 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.292 -13.764 -0.357 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.382 5.382 14 C 0.406 3.594 15 O -0.482 6.482 16 N -0.391 5.391 17 C 0.071 3.929 18 H 0.117 0.883 19 C -0.019 4.019 20 O -0.373 6.373 21 C -0.112 4.112 22 C -0.189 4.189 23 C -0.016 4.016 24 O -0.304 6.304 25 C -0.014 4.014 26 C -0.186 4.186 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.245 0.755 32 H 0.233 0.767 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.223 0.777 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 23.164 -13.593 0.398 26.861 hybrid contribution 0.014 1.041 -0.891 1.370 sum 23.179 -12.552 -0.493 26.364 Atomic orbital electron populations 1.69614 1.05710 1.27813 1.48230 1.25064 0.95536 0.98174 0.97157 0.86669 0.79928 0.83762 0.79128 1.19408 1.19990 1.19199 1.19435 0.78962 0.96786 1.48641 0.86100 1.42118 1.07689 1.06136 1.65508 1.19665 0.88111 0.84860 0.84912 1.90536 1.69271 1.30915 1.55610 1.20794 0.93315 0.82944 1.03159 1.44746 1.05250 1.09268 1.78905 1.15850 0.82555 0.83232 0.77752 1.90890 1.55181 1.43212 1.58880 1.44972 1.07397 1.06223 1.80467 1.20860 0.80894 0.97096 0.94080 0.88252 1.22710 0.96045 0.90251 0.92868 1.86452 1.71668 1.52460 1.26703 1.21386 0.96286 0.97191 0.96363 1.22248 1.01873 0.98743 0.96057 1.22595 0.81450 0.95788 1.01727 1.87936 1.20663 1.93522 1.28236 1.22550 0.98435 0.95914 0.84536 1.22226 0.95618 0.99047 1.01706 0.91388 0.79239 0.89917 0.89970 0.75456 0.76710 0.92799 0.92929 0.77662 0.89349 0.90820 0.90471 0.93118 0.88790 0.93129 0.88904 0.90498 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.98 13.96 55.49 0.77 -24.21 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.01 27.74 -169.99 -4.71 14.30 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 7 C -0.31 -8.54 10.16 -14.94 -0.15 -8.69 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 9 N -0.58 -13.43 5.09 -10.97 -0.06 -13.49 16 10 C 0.44 9.65 7.85 -10.99 -0.09 9.57 16 11 O -0.58 -14.62 15.24 5.55 0.08 -14.54 16 12 C 0.13 2.21 6.15 -5.19 -0.03 2.18 16 13 N -0.72 -11.64 5.53 -66.41 -0.37 -12.00 16 14 C 0.71 10.84 8.53 -86.92 -0.74 10.09 16 15 O -0.60 -10.96 16.01 5.29 0.08 -10.88 16 16 N -0.74 -8.49 4.34 -58.67 -0.25 -8.74 16 17 C 0.18 1.75 1.95 -67.92 -0.13 1.61 16 18 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 19 C 0.06 0.54 6.46 37.16 0.24 0.78 16 20 O -0.57 -4.82 12.67 -35.23 -0.45 -5.27 16 21 C -0.09 -0.74 1.76 -90.43 -0.16 -0.90 16 22 C -0.15 -1.26 5.17 -26.59 -0.14 -1.39 16 23 C 0.06 0.48 6.84 37.20 0.25 0.74 16 24 O -0.38 -3.62 10.77 -35.23 -0.38 -4.00 16 25 C 0.06 0.44 6.84 37.21 0.25 0.69 16 26 C -0.15 -1.01 5.07 -26.59 -0.13 -1.15 16 27 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 31 H 0.41 6.47 7.45 -40.82 -0.30 6.17 16 32 H 0.40 4.05 8.21 -40.82 -0.34 3.72 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.36 6.84 -51.93 -0.36 0.01 16 35 H 0.38 1.79 9.12 45.56 0.42 2.21 16 36 H 0.09 0.75 7.45 -51.93 -0.39 0.36 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.64 7.35 -51.93 -0.38 0.26 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.44 6.81 -51.93 -0.35 0.09 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -34.11 359.91 -6.46 -40.58 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -5.69 Total: 18.18 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: -0.92 Total: 14.64 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.10 Total: -58.44 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.66 Total: -34.68 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.11 -6.46 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686402717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.922 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds