Wall clock time and date at job start Fri Apr 10 2020 18:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 119.99233 * 2 1 4 4 H 1.48493 * 109.47173 * 270.00034 * 3 2 1 5 5 H 1.48497 * 109.47258 * 30.00564 * 3 2 1 6 6 H 1.48505 * 109.46744 * 149.99958 * 3 2 1 7 7 C 1.38941 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00225 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00088 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00039 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00144 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00225 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47427 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00056 * 180.02562 * 13 12 10 15 15 O 1.21585 * 119.99880 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99906 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99891 * 179.97438 * 16 14 13 18 18 H 1.08993 * 109.47015 * 35.00565 * 17 16 14 19 19 C 1.53008 * 109.47294 * 275.00151 * 17 16 14 20 20 O 1.42900 * 109.46878 * 295.47561 * 19 17 16 21 21 C 1.53005 * 109.47110 * 155.00502 * 17 16 14 22 22 C 1.53188 * 109.53911 * 303.34744 * 21 17 16 23 23 C 1.53092 * 109.15945 * 183.15383 * 22 21 17 24 24 O 1.42904 * 109.41520 * 57.60787 * 23 22 21 25 25 C 1.42905 * 114.09943 * 298.83830 * 24 23 22 26 26 C 1.53094 * 109.41202 * 61.15926 * 25 24 23 27 27 H 0.97001 * 120.00908 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99919 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47049 * 59.99998 * 12 10 9 30 30 H 1.09007 * 109.46918 * 300.00182 * 12 10 9 31 31 H 0.96999 * 119.99689 * 359.97438 * 13 12 10 32 32 H 0.97002 * 119.99817 * 0.02562 * 16 14 13 33 33 H 1.09006 * 109.46504 * 55.47500 * 19 17 16 34 34 H 1.08994 * 109.46895 * 175.47309 * 19 17 16 35 35 H 0.96696 * 113.99643 * 179.97438 * 20 19 17 36 36 H 1.08991 * 109.54226 * 63.61349 * 21 17 16 37 37 H 1.08997 * 109.52090 * 303.05512 * 22 21 17 38 38 H 1.08996 * 109.51954 * 63.24576 * 22 21 17 39 39 H 1.09003 * 109.48248 * 297.62621 * 23 22 21 40 40 H 1.08994 * 109.48069 * 177.59179 * 23 22 21 41 41 H 1.08999 * 109.48298 * 301.18189 * 25 24 23 42 42 H 1.08999 * 109.48209 * 181.13985 * 25 24 23 43 43 H 1.08999 * 109.52511 * 182.48648 * 26 25 24 44 44 H 1.09001 * 109.51993 * 62.29554 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2479 1.6179 0.0000 4 1 2.4953 2.0466 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2031 -0.0011 10 6 4.0539 -2.3702 -0.0011 11 8 3.4475 -3.4207 -0.0011 12 6 5.5609 -2.3701 -0.0022 13 7 6.0493 -3.7513 -0.0026 14 6 7.3744 -3.9975 -0.0031 15 8 8.1644 -3.0732 -0.0037 16 7 7.8238 -5.2681 -0.0029 17 6 9.2641 -5.5357 -0.0041 18 1 9.7755 -4.7742 0.5847 19 6 9.7874 -5.5058 -1.4416 20 8 9.1946 -6.5716 -2.1864 21 6 9.5273 -6.9140 0.6059 22 6 8.9301 -6.9731 2.0153 23 6 9.2662 -8.3264 2.6471 24 8 10.6843 -8.5015 2.6688 25 6 11.2920 -8.5025 1.3754 26 6 11.0373 -7.1561 0.6925 27 1 -0.4851 0.8400 0.0004 28 1 3.8648 -0.3630 -0.0014 29 1 5.9248 -1.8559 0.8873 30 1 5.9235 -1.8566 -0.8928 31 1 5.4190 -4.4886 -0.0018 32 1 7.1935 -6.0054 -0.0028 33 1 9.5287 -4.5525 -1.9026 34 1 10.8708 -5.6248 -1.4364 35 1 9.4811 -6.6134 -3.1090 36 1 9.0700 -7.6820 -0.0178 37 1 9.3515 -6.1726 2.6233 38 1 7.8479 -6.8567 1.9575 39 1 8.8104 -9.1245 2.0609 40 1 8.8805 -8.3578 3.6660 41 1 10.8627 -9.3027 0.7726 42 1 12.3656 -8.6605 1.4782 43 1 11.4620 -7.1707 -0.3113 44 1 11.5013 -6.3593 1.2738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686402717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:06 Heat of formation + Delta-G solvation = -197.047386 kcal Electronic energy + Delta-G solvation = -26633.781191 eV Core-core repulsion = 22584.779071 eV Total energy + Delta-G solvation = -4049.002121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49868 -40.56430 -39.96374 -38.20423 -36.31352 -36.07616 -35.27861 -33.99789 -33.79635 -32.04266 -30.31479 -28.79502 -26.28606 -25.91108 -24.37657 -22.80410 -21.64902 -21.46578 -21.14156 -20.56830 -19.48302 -18.29806 -17.72522 -17.45688 -16.97816 -16.88664 -16.85462 -16.68153 -16.10302 -15.84927 -15.61959 -15.54404 -15.43502 -14.92403 -14.92143 -14.47563 -14.31956 -13.99757 -13.85064 -13.57807 -13.40351 -13.19324 -12.96873 -12.69869 -12.44869 -12.24127 -12.00398 -11.88399 -11.60038 -11.58320 -11.38678 -11.18167 -10.88070 -10.65745 -10.53007 -10.35917 -10.30446 -9.80475 -8.45669 -6.07759 1.31148 1.33979 1.43689 1.58265 1.78694 2.11883 2.20399 2.78206 3.00230 3.10550 3.26319 3.40289 3.54545 3.79719 3.87783 3.99594 4.08739 4.25486 4.32968 4.38713 4.39272 4.44509 4.46577 4.54091 4.62389 4.72954 4.81314 4.83054 4.92260 4.95405 5.15332 5.17347 5.29380 5.39557 5.48396 5.55621 5.87992 5.95819 6.29806 6.48707 6.77954 6.88231 7.01184 7.28343 7.52741 7.78065 8.70739 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002405 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.094580 B =11638.682234 C =12017.776750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.139 3.861 13 N -0.728 5.728 14 C 0.707 3.293 15 O -0.629 6.629 16 N -0.722 5.722 17 C 0.172 3.828 18 H 0.086 0.914 19 C 0.067 3.933 20 O -0.577 6.577 21 C -0.083 4.083 22 C -0.150 4.150 23 C 0.061 3.939 24 O -0.406 6.406 25 C 0.058 3.942 26 C -0.143 4.143 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.409 0.591 32 H 0.407 0.593 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.394 0.606 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.156 -13.295 -0.725 29.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.500 6.500 12 C 0.011 3.989 13 N -0.385 5.385 14 C 0.407 3.593 15 O -0.511 6.511 16 N -0.376 5.376 17 C 0.067 3.933 18 H 0.104 0.896 19 C -0.012 4.012 20 O -0.385 6.385 21 C -0.102 4.102 22 C -0.187 4.187 23 C -0.016 4.016 24 O -0.325 6.325 25 C -0.018 4.018 26 C -0.181 4.181 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.246 0.754 32 H 0.242 0.758 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.243 0.757 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.066 -13.174 0.015 29.205 hybrid contribution -0.886 0.718 -0.795 1.390 sum 25.180 -12.456 -0.779 28.103 Atomic orbital electron populations 1.69776 1.08027 1.29464 1.49305 1.26069 0.96441 1.02612 0.95730 0.85441 0.79578 0.77009 0.80074 1.18075 1.19833 1.15582 1.19022 0.80956 0.95257 1.50755 0.91873 1.41921 1.06130 1.07427 1.66332 1.20515 0.90067 0.83848 0.82244 1.90525 1.70819 1.32326 1.56365 1.20679 0.89160 0.84230 1.04874 1.44722 1.05685 1.08716 1.79396 1.15908 0.81848 0.84011 0.77553 1.90870 1.55629 1.44350 1.60262 1.44942 1.08471 1.05147 1.79073 1.21022 0.79500 0.97752 0.95024 0.89630 1.22570 0.97408 0.89378 0.91857 1.86408 1.72044 1.51922 1.28141 1.21299 0.97277 0.95805 0.95777 1.22216 1.01658 0.98676 0.96197 1.22640 0.81139 0.95655 1.02164 1.87911 1.21255 1.93606 1.29748 1.22716 0.99236 0.96095 0.83768 1.22208 0.94497 0.98891 1.02543 0.90918 0.77216 0.88108 0.88106 0.75407 0.75784 0.95123 0.90389 0.75666 0.89237 0.92144 0.90668 0.92185 0.88440 0.92325 0.87523 0.88913 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 13.96 21.66 0.30 -54.13 16 2 C -0.01 -0.47 5.50 84.92 0.47 0.00 16 3 Si 0.96 38.10 27.74 68.60 1.90 40.00 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 7 C -0.33 -18.80 10.16 84.04 0.85 -17.95 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.21 16 9 N -0.58 -26.61 5.09 -306.99 -1.56 -28.17 16 10 C 0.45 19.47 7.85 87.66 0.69 20.15 16 11 O -0.61 -31.69 15.24 -3.07 -0.05 -31.74 16 12 C 0.14 4.60 6.15 85.63 0.53 5.13 16 13 N -0.73 -22.52 5.53 -482.29 -2.67 -25.19 16 14 C 0.71 20.81 8.53 179.06 1.53 22.34 16 15 O -0.63 -22.05 16.01 -3.98 -0.06 -22.11 16 16 N -0.72 -15.82 4.34 -457.80 -1.99 -17.81 16 17 C 0.17 3.16 1.95 45.00 0.09 3.25 16 18 H 0.09 1.85 7.58 -2.39 -0.02 1.83 16 19 C 0.07 1.08 6.46 71.98 0.47 1.54 16 20 O -0.58 -8.46 12.67 -148.98 -1.89 -10.35 16 21 C -0.08 -1.18 1.76 -10.67 -0.02 -1.20 16 22 C -0.15 -2.34 5.17 30.69 0.16 -2.18 16 23 C 0.06 0.89 6.84 72.01 0.49 1.38 16 24 O -0.41 -7.07 10.77 -148.98 -1.60 -8.67 16 25 C 0.06 0.69 6.84 72.01 0.49 1.18 16 26 C -0.14 -1.65 5.07 30.68 0.16 -1.49 16 27 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 29 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 31 H 0.41 12.73 7.45 -92.71 -0.69 12.04 16 32 H 0.41 7.76 8.21 -92.71 -0.76 7.00 16 33 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.08 0.86 6.84 -2.39 -0.02 0.85 16 35 H 0.39 2.77 9.12 -74.06 -0.68 2.09 16 36 H 0.09 1.31 7.45 -2.39 -0.02 1.29 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.18 7.35 -2.39 -0.02 1.16 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 0.78 6.81 -2.39 -0.02 0.77 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -76.55 359.91 -3.37 -79.92 By element: Atomic # 1 Polarization: 47.74 SS G_CDS: -1.65 Total: 46.09 kcal Atomic # 6 Polarization: 26.27 SS G_CDS: 5.90 Total: 32.16 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -5.91 Total: -125.30 kcal Atomic # 8 Polarization: -69.27 SS G_CDS: -3.60 Total: -72.87 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Total: -76.55 -3.37 -79.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686402717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.130 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds