Wall clock time and date at job start Fri Apr 10 2020 18:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47071 * 239.99877 * 3 2 1 5 5 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47603 * 119.99895 * 3 2 1 7 7 C 1.38955 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99885 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99978 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47109 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 10 15 15 H 1.08998 * 112.85142 * 336.19199 * 14 13 12 16 16 C 1.53786 * 113.61508 * 107.50429 * 14 13 12 17 17 C 1.53776 * 87.08270 * 139.97824 * 16 14 13 18 18 H 1.08997 * 113.61528 * 89.11616 * 17 16 14 19 19 C 1.52997 * 113.69000 * 220.01085 * 17 16 14 20 20 N 1.46509 * 109.46971 * 272.53494 * 19 17 16 21 21 C 1.34777 * 120.00144 * 180.02562 * 20 19 17 22 22 O 1.21281 * 120.00034 * 359.97438 * 21 20 19 23 23 C 1.50695 * 120.00121 * 179.97438 * 21 20 19 24 24 C 1.53001 * 109.47281 * 179.97438 * 23 21 20 25 25 C 1.53005 * 109.46813 * 180.02562 * 24 23 21 26 26 F 1.39898 * 109.46493 * 180.02562 * 25 24 23 27 27 C 1.53784 * 113.61219 * 204.99956 * 14 13 12 28 28 H 0.96996 * 120.00275 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00385 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.46894 * 60.00096 * 12 10 9 31 31 H 1.09004 * 109.47113 * 300.00247 * 12 10 9 32 32 H 1.00902 * 111.00068 * 56.04268 * 13 12 10 33 33 H 1.09000 * 113.61363 * 254.52934 * 16 14 13 34 34 H 1.09006 * 113.61045 * 25.42942 * 16 14 13 35 35 H 1.08997 * 109.47783 * 32.53024 * 19 17 16 36 36 H 1.09005 * 109.47538 * 152.53622 * 19 17 16 37 37 H 0.97000 * 119.99824 * 359.97438 * 20 19 17 38 38 H 1.08997 * 109.47116 * 300.00389 * 23 21 20 39 39 H 1.09005 * 109.46793 * 59.99704 * 23 21 20 40 40 H 1.08996 * 109.47057 * 300.00169 * 24 23 21 41 41 H 1.08998 * 109.46879 * 60.00197 * 24 23 21 42 42 H 1.08996 * 109.46897 * 299.99808 * 25 24 23 43 43 H 1.08998 * 109.47271 * 60.00395 * 25 24 23 44 44 H 1.08998 * 113.61342 * 334.56785 * 27 14 13 45 45 H 1.08998 * 113.61529 * 105.46982 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9796 0.0007 14 6 1.4980 -7.2708 0.0008 15 1 0.4882 -7.2047 0.4058 16 6 1.5775 -8.0148 -1.3428 17 6 1.7627 -9.3055 -0.5276 18 1 0.8248 -9.7965 -0.2681 19 6 2.7916 -10.2675 -1.1249 20 7 2.1338 -11.1435 -2.0978 21 6 2.8489 -12.0785 -2.7543 22 8 4.0370 -12.1944 -2.5400 23 6 2.1722 -12.9799 -3.7545 24 6 3.2010 -13.9419 -4.3520 25 6 2.5140 -14.8567 -5.3680 26 9 3.4547 -15.7366 -5.9138 27 6 2.3267 -8.4210 0.5970 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0002 30 1 0.6175 -4.9205 -0.8902 31 1 0.6167 -4.9209 0.8897 32 1 2.8327 -5.9125 0.7825 33 1 0.6486 -7.9877 -1.9125 34 1 2.4492 -7.7464 -1.9396 35 1 3.5765 -9.6975 -1.6219 36 1 3.2290 -10.8714 -0.3298 37 1 1.1835 -11.0511 -2.2689 38 1 1.3872 -13.5497 -3.2573 39 1 1.7348 -12.3764 -4.5498 40 1 3.9857 -13.3717 -4.8492 41 1 3.6387 -14.5454 -3.5568 42 1 1.7292 -15.4268 -4.8710 43 1 2.0766 -14.2528 -6.1630 44 1 3.4032 -8.2636 0.5304 45 1 2.0027 -8.7218 1.5932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688909083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:13 Heat of formation + Delta-G solvation = -122.236236 kcal Electronic energy + Delta-G solvation = -24720.835341 eV Core-core repulsion = 20687.450065 eV Total energy + Delta-G solvation = -4033.385276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.01332 -40.25666 -39.27356 -38.05985 -35.22482 -34.43715 -34.05895 -33.21090 -31.21079 -29.10441 -27.26927 -26.15165 -25.70733 -24.03833 -22.62690 -21.57142 -20.76653 -19.71182 -19.09216 -17.88168 -17.53752 -17.00064 -16.66090 -16.17702 -16.00087 -15.76902 -15.41752 -15.22901 -15.16075 -14.55129 -14.48153 -14.13443 -13.97652 -13.72586 -13.40056 -13.30719 -12.55475 -12.45956 -12.44664 -12.28466 -11.98258 -11.64707 -11.54898 -11.52108 -11.50943 -11.13402 -11.04475 -10.97832 -10.77602 -10.44755 -10.38973 -10.21701 -10.12412 -9.50567 -9.36082 -8.45097 -8.07989 -7.96461 -6.42298 -3.83145 2.30945 2.79141 3.19871 3.25460 3.30067 3.90478 4.07042 4.09239 4.20731 4.26212 4.28523 4.36554 4.50512 4.54376 4.68289 4.70550 4.73104 4.77412 4.96854 5.00361 5.18612 5.21899 5.23290 5.26861 5.44653 5.48016 5.59480 5.65054 5.74351 5.74898 5.79706 5.90019 5.93358 6.05543 6.16722 6.22291 6.36181 7.14462 7.27892 7.54483 7.65921 7.89126 8.05724 8.60807 9.17300 9.53734 10.05376 10.75364 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.001571 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.651620 B =17823.161728 C =18133.796058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.656 5.656 14 C 0.059 3.941 15 H 0.071 0.929 16 C -0.121 4.121 17 C -0.125 4.125 18 H 0.093 0.907 19 C 0.130 3.870 20 N -0.728 5.728 21 C 0.510 3.490 22 O -0.539 6.539 23 C -0.139 4.139 24 C -0.140 4.140 25 C 0.062 3.938 26 F -0.218 7.218 27 C -0.132 4.132 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.351 0.649 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 -26.773 -4.970 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.289 5.289 14 C -0.051 4.051 15 H 0.089 0.911 16 C -0.159 4.159 17 C -0.145 4.145 18 H 0.112 0.888 19 C 0.007 3.993 20 N -0.380 5.380 21 C 0.296 3.704 22 O -0.416 6.416 23 C -0.180 4.180 24 C -0.178 4.178 25 C 0.007 3.993 26 F -0.199 7.199 27 C -0.170 4.170 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.171 0.829 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.865 -26.664 -5.488 27.373 hybrid contribution -1.166 0.961 0.837 1.727 sum -4.031 -25.703 -4.651 26.429 Atomic orbital electron populations 1.69601 1.05936 1.28255 1.50577 1.25257 0.95632 0.99712 0.97288 0.85913 0.78757 0.80430 0.79088 1.19884 1.20978 1.19915 1.19666 0.93367 0.82277 1.47705 0.87973 1.41861 1.09174 1.04612 1.64388 1.19841 0.88406 0.84758 0.84468 1.90525 1.13776 1.87077 1.55389 1.21731 0.94427 0.91078 1.01021 1.60234 1.18358 0.99472 1.50810 1.22981 0.96609 0.88538 0.97021 0.91114 1.23196 1.02653 0.93326 0.96715 1.22647 0.98798 0.94698 0.98314 0.88837 1.21402 0.95223 0.91452 0.91215 1.46041 1.12832 1.36039 1.43099 1.20587 0.87387 0.80812 0.81620 1.90741 1.15413 1.70137 1.65313 1.21549 0.99598 0.98031 0.98776 1.21919 0.98662 0.97813 0.99411 1.22002 0.89777 0.90740 0.96816 1.92780 1.68224 1.71309 1.87598 1.23199 1.01268 0.95216 0.97355 0.91835 0.77482 0.89708 0.93930 0.82893 0.91837 0.88868 0.90888 0.91486 0.76515 0.88520 0.88387 0.89832 0.89930 0.90745 0.90651 0.88795 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 11 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 12 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 13 N -0.66 -10.25 6.18 -107.13 -0.66 -10.91 16 14 C 0.06 0.66 4.14 -66.90 -0.28 0.39 16 15 H 0.07 0.74 7.86 -51.93 -0.41 0.34 16 16 C -0.12 -1.18 7.43 -25.92 -0.19 -1.38 16 17 C -0.13 -0.95 3.75 -89.81 -0.34 -1.28 16 18 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 19 C 0.13 1.10 5.51 -4.04 -0.02 1.08 16 20 N -0.73 -4.98 5.56 -60.29 -0.33 -5.32 16 21 C 0.51 4.35 7.83 -10.99 -0.09 4.27 16 22 O -0.54 -7.15 15.98 5.56 0.09 -7.06 16 23 C -0.14 -0.63 5.70 -27.89 -0.16 -0.78 16 24 C -0.14 -0.86 4.96 -26.73 -0.13 -0.99 16 25 C 0.06 0.29 7.55 37.16 0.28 0.57 16 26 F -0.22 -1.87 17.36 2.25 0.04 -1.83 16 27 C -0.13 -1.20 7.21 -25.91 -0.19 -1.39 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.35 5.69 8.25 -39.29 -0.32 5.37 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 35 H 0.07 0.76 7.85 -51.93 -0.41 0.36 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 1.59 8.47 -40.82 -0.35 1.25 16 38 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 42 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -34.59 382.58 -8.06 -42.65 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.22 Total: 10.99 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.47 Total: 3.57 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.33 Total: -54.30 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.18 Total: -22.88 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.59 -8.06 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688909083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.584 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds