Wall clock time and date at job start Fri Apr 10 2020 18:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99718 * 2 1 4 4 C 1.53003 * 109.46852 * 293.94951 * 3 2 1 5 5 N 1.46499 * 109.46708 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 C 1.52994 * 112.85291 * 48.80009 * 8 6 5 10 10 F 1.39903 * 109.47078 * 189.66197 * 9 8 6 11 11 C 1.53789 * 113.61207 * 277.49245 * 8 6 5 12 12 C 1.53781 * 87.07999 * 220.02204 * 11 8 6 13 13 C 1.53785 * 87.08407 * 25.43428 * 12 11 8 14 14 C 1.46902 * 111.00017 * 123.94982 * 2 1 3 15 15 C 1.50700 * 109.46761 * 66.04528 * 14 2 1 16 16 O 1.21291 * 120.00169 * 359.97438 * 15 14 2 17 17 N 1.34778 * 119.99896 * 179.97438 * 15 14 2 18 18 C 1.37097 * 119.99986 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00163 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99935 * 179.97438 * 18 17 15 21 21 N 1.31407 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46899 * 89.99833 * 22 20 18 24 24 H 1.48494 * 109.46888 * 210.00272 * 22 20 18 25 25 H 1.48499 * 109.47093 * 330.00134 * 22 20 18 26 26 H 1.08999 * 109.47128 * 59.99756 * 1 2 3 27 27 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47009 * 300.00183 * 1 2 3 29 29 H 1.09000 * 109.46594 * 173.95351 * 3 2 1 30 30 H 1.08994 * 109.47473 * 53.95567 * 3 2 1 31 31 H 1.08998 * 109.46692 * 60.00684 * 4 3 2 32 32 H 1.08994 * 109.47584 * 300.00548 * 4 3 2 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 3 34 34 H 1.08993 * 109.47481 * 309.66859 * 9 8 6 35 35 H 1.09004 * 109.47001 * 69.66776 * 9 8 6 36 36 H 1.09001 * 113.61182 * 334.56987 * 11 8 6 37 37 H 1.08996 * 113.61248 * 105.47426 * 11 8 6 38 38 H 1.09001 * 113.61382 * 270.88500 * 12 11 8 39 39 H 1.09004 * 113.61016 * 139.98068 * 12 11 8 40 40 H 1.08992 * 113.61366 * 220.01838 * 13 12 11 41 41 H 1.08996 * 113.61272 * 89.11122 * 13 12 11 42 42 H 1.08993 * 109.47109 * 186.04506 * 14 2 1 43 43 H 1.09001 * 109.46930 * 306.04956 * 14 2 1 44 44 H 0.97001 * 119.99956 * 359.97438 * 17 15 14 45 45 H 0.96999 * 120.00375 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3186 6 6 1.9557 4.2240 -2.3852 7 8 1.3392 3.8110 -3.3445 8 6 2.4910 5.6327 -2.3829 9 6 3.9597 5.7095 -1.9615 10 9 4.3207 7.0476 -1.7705 11 6 1.5843 6.6349 -1.6490 12 6 1.9098 7.6324 -2.7733 13 6 2.1779 6.4127 -3.6707 14 6 1.9955 -0.7659 1.1377 15 6 1.6369 -2.2203 0.9730 16 8 1.0046 -2.5831 0.0035 17 7 2.0188 -3.1180 1.9029 18 6 1.6931 -4.4413 1.7528 19 1 1.1301 -4.7643 0.8896 20 6 2.0873 -5.3669 2.7113 21 7 2.7720 -4.9738 3.7618 22 14 1.6429 -7.1697 2.5072 23 1 2.7190 -7.8626 1.7542 24 1 1.4919 -7.7967 3.8447 25 1 0.3644 -7.2828 1.7603 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.0797 1.3444 0.1083 30 1 1.5611 1.9274 0.8309 31 1 0.5472 2.0844 -1.4265 32 1 2.0657 1.5015 -2.1492 33 1 2.6497 3.7553 -0.5511 34 1 4.1002 5.1589 -1.0314 35 1 4.5845 5.2723 -2.7404 36 1 0.5365 6.3360 -1.6203 37 1 1.9665 6.9364 -0.6737 38 1 2.7971 8.2350 -2.5790 39 1 1.0535 8.2278 -3.0901 40 1 3.0391 6.5347 -4.3275 41 1 1.2923 6.0530 -4.1946 42 1 3.0797 -0.6610 1.1757 43 1 1.5611 -0.3871 2.0628 44 1 2.5248 -2.8280 2.6780 45 1 3.0469 -5.6198 4.4311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690977972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:31 Heat of formation + Delta-G solvation = -94.483319 kcal Electronic energy + Delta-G solvation = -25988.687547 eV Core-core repulsion = 21956.505727 eV Total energy + Delta-G solvation = -4032.181819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -48.24730 -40.73513 -38.77288 -37.95788 -36.74578 -34.78493 -33.83617 -31.28023 -30.53527 -28.89495 -27.70407 -26.17484 -25.49203 -24.70812 -23.67198 -21.32307 -21.26813 -19.31079 -19.19628 -18.09092 -17.86910 -16.73799 -16.48638 -16.19848 -15.91422 -15.78016 -15.69884 -14.95754 -14.87232 -14.63062 -14.32688 -14.00030 -13.87843 -13.52996 -13.35863 -13.13793 -12.89228 -12.75019 -12.53697 -12.16224 -11.94328 -11.58002 -11.52712 -11.49247 -11.43616 -11.31106 -11.10266 -10.95949 -10.75797 -10.65805 -10.40599 -10.23657 -10.00808 -9.49697 -9.31161 -8.51243 -8.01592 -7.92163 -6.43635 -3.84353 2.25937 2.75456 3.16779 3.25606 3.31424 3.74518 3.87484 3.92921 3.95056 4.03687 4.20961 4.27184 4.36970 4.58267 4.73480 4.76504 4.92270 5.00401 5.08535 5.09926 5.22456 5.28390 5.33656 5.37862 5.51216 5.57702 5.59348 5.64931 5.70567 5.78568 5.84066 5.88791 5.96209 5.99625 6.14392 6.24796 6.52318 7.12011 7.19568 7.28309 7.53692 7.90202 8.04393 8.59684 9.16368 9.52138 10.03934 10.74076 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.001953 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.227576 B =14333.135018 C =14717.581324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.727 5.727 6 C 0.532 3.468 7 O -0.528 6.528 8 C -0.148 4.148 9 C 0.090 3.910 10 F -0.205 7.205 11 C -0.116 4.116 12 C -0.145 4.145 13 C -0.110 4.110 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.015 0.985 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 24.886 -5.965 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.004 4.004 5 N -0.379 5.379 6 C 0.317 3.683 7 O -0.403 6.403 8 C -0.152 4.152 9 C 0.035 3.965 10 F -0.186 7.186 11 C -0.153 4.153 12 C -0.182 4.182 13 C -0.148 4.148 14 C -0.084 4.084 15 C 0.228 3.772 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.034 0.966 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.232 0.768 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.685 23.983 -7.578 25.208 hybrid contribution 0.203 -0.250 1.741 1.771 sum 1.888 23.733 -5.836 24.513 Atomic orbital electron populations 1.22631 0.86442 1.04795 0.99097 1.61449 1.08978 1.10352 1.43121 1.22254 1.00756 0.89869 0.95597 1.21385 0.99719 0.80468 0.98778 1.46017 1.57840 1.14458 1.19602 1.19982 0.80012 0.85902 0.82417 1.90733 1.40595 1.74819 1.34187 1.22866 0.96665 0.93066 1.02599 1.21615 0.92902 0.79094 1.02888 1.92750 1.92600 1.36453 1.96777 1.22841 0.99226 0.94589 0.98667 1.23020 1.02723 0.96549 0.95948 1.22857 1.03232 0.94405 0.94273 1.21869 1.00667 0.94264 0.91617 1.19698 0.85580 0.86589 0.85291 1.90495 1.43846 1.80088 1.31596 1.41862 1.49388 1.07370 1.21445 1.19702 1.32911 0.82237 1.07948 0.87881 1.25266 0.96822 1.00603 0.95292 1.69607 1.38069 1.35763 1.10912 0.85852 0.79120 0.81848 0.77443 1.20385 1.20957 1.19417 0.91868 0.88331 0.96617 0.90272 0.94545 0.91050 0.90080 0.76780 0.90089 0.89560 0.89303 0.90274 0.88569 0.91019 0.90756 0.88292 0.89314 0.93336 0.77506 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.07 0.54 0.82 16 2 N -0.51 -8.18 4.50 -244.36 -1.10 -9.28 16 3 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.36 5.60 -4.04 -0.02 1.33 16 5 N -0.73 -6.35 5.44 -60.30 -0.33 -6.68 16 6 C 0.53 5.51 6.93 -10.98 -0.08 5.43 16 7 O -0.53 -7.74 15.90 5.56 0.09 -7.65 16 8 C -0.15 -1.12 1.26 -154.84 -0.19 -1.31 16 9 C 0.09 0.53 6.96 37.15 0.26 0.79 16 10 F -0.20 -1.51 14.57 2.25 0.03 -1.47 16 11 C -0.12 -0.77 6.96 -25.91 -0.18 -0.95 16 12 C -0.15 -0.95 7.56 -25.92 -0.20 -1.15 16 13 C -0.11 -0.86 6.97 -25.91 -0.18 -1.05 16 14 C 0.05 0.80 5.45 -4.97 -0.03 0.78 16 15 C 0.44 10.24 7.47 -10.98 -0.08 10.16 16 16 O -0.58 -15.30 13.91 5.55 0.08 -15.23 16 17 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 18 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H 0.06 0.90 6.47 -51.93 -0.34 0.57 16 27 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 28 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 29 H 0.08 0.79 7.93 -51.93 -0.41 0.37 16 30 H 0.04 0.37 8.12 -51.93 -0.42 -0.06 16 31 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.40 2.30 7.37 -40.82 -0.30 2.00 16 34 H 0.08 0.32 7.03 -51.93 -0.37 -0.05 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 38 H 0.10 0.63 6.44 -51.93 -0.33 0.30 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 41 H 0.10 0.92 7.43 -51.93 -0.39 0.54 16 42 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 43 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -32.98 367.31 -7.29 -40.26 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.82 Total: 8.82 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.42 Total: 7.44 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.76 Total: -53.60 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.03 Total: -1.47 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.98 -7.29 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690977972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.219 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds