Wall clock time and date at job start Fri Apr 10 2020 18:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99718 * 2 1 4 4 C 1.53003 * 109.46852 * 293.94951 * 3 2 1 5 5 N 1.46499 * 109.46708 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 C 1.52994 * 112.85291 * 48.80009 * 8 6 5 10 10 F 1.39903 * 109.47078 * 189.66197 * 9 8 6 11 11 C 1.53789 * 113.61207 * 277.49245 * 8 6 5 12 12 C 1.53781 * 87.07999 * 220.02204 * 11 8 6 13 13 C 1.53785 * 87.08407 * 25.43428 * 12 11 8 14 14 C 1.46902 * 111.00017 * 123.94982 * 2 1 3 15 15 C 1.50700 * 109.46761 * 66.04528 * 14 2 1 16 16 O 1.21291 * 120.00169 * 359.97438 * 15 14 2 17 17 N 1.34778 * 119.99896 * 179.97438 * 15 14 2 18 18 C 1.37097 * 119.99986 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00163 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99935 * 179.97438 * 18 17 15 21 21 N 1.31407 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46899 * 89.99833 * 22 20 18 24 24 H 1.48494 * 109.46888 * 210.00272 * 22 20 18 25 25 H 1.48499 * 109.47093 * 330.00134 * 22 20 18 26 26 H 1.08999 * 109.47128 * 59.99756 * 1 2 3 27 27 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47009 * 300.00183 * 1 2 3 29 29 H 1.09000 * 109.46594 * 173.95351 * 3 2 1 30 30 H 1.08994 * 109.47473 * 53.95567 * 3 2 1 31 31 H 1.08998 * 109.46692 * 60.00684 * 4 3 2 32 32 H 1.08994 * 109.47584 * 300.00548 * 4 3 2 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 3 34 34 H 1.08993 * 109.47481 * 309.66859 * 9 8 6 35 35 H 1.09004 * 109.47001 * 69.66776 * 9 8 6 36 36 H 1.09001 * 113.61182 * 334.56987 * 11 8 6 37 37 H 1.08996 * 113.61248 * 105.47426 * 11 8 6 38 38 H 1.09001 * 113.61382 * 270.88500 * 12 11 8 39 39 H 1.09004 * 113.61016 * 139.98068 * 12 11 8 40 40 H 1.08992 * 113.61366 * 220.01838 * 13 12 11 41 41 H 1.08996 * 113.61272 * 89.11122 * 13 12 11 42 42 H 1.08993 * 109.47109 * 186.04506 * 14 2 1 43 43 H 1.09001 * 109.46930 * 306.04956 * 14 2 1 44 44 H 0.97001 * 119.99956 * 359.97438 * 17 15 14 45 45 H 0.96999 * 120.00375 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3186 6 6 1.9557 4.2240 -2.3852 7 8 1.3392 3.8110 -3.3445 8 6 2.4910 5.6327 -2.3829 9 6 3.9597 5.7095 -1.9615 10 9 4.3207 7.0476 -1.7705 11 6 1.5843 6.6349 -1.6490 12 6 1.9098 7.6324 -2.7733 13 6 2.1779 6.4127 -3.6707 14 6 1.9955 -0.7659 1.1377 15 6 1.6369 -2.2203 0.9730 16 8 1.0046 -2.5831 0.0035 17 7 2.0188 -3.1180 1.9029 18 6 1.6931 -4.4413 1.7528 19 1 1.1301 -4.7643 0.8896 20 6 2.0873 -5.3669 2.7113 21 7 2.7720 -4.9738 3.7618 22 14 1.6429 -7.1697 2.5072 23 1 2.7190 -7.8626 1.7542 24 1 1.4919 -7.7967 3.8447 25 1 0.3644 -7.2828 1.7603 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.0797 1.3444 0.1083 30 1 1.5611 1.9274 0.8309 31 1 0.5472 2.0844 -1.4265 32 1 2.0657 1.5015 -2.1492 33 1 2.6497 3.7553 -0.5511 34 1 4.1002 5.1589 -1.0314 35 1 4.5845 5.2723 -2.7404 36 1 0.5365 6.3360 -1.6203 37 1 1.9665 6.9364 -0.6737 38 1 2.7971 8.2350 -2.5790 39 1 1.0535 8.2278 -3.0901 40 1 3.0391 6.5347 -4.3275 41 1 1.2923 6.0530 -4.1946 42 1 3.0797 -0.6610 1.1757 43 1 1.5611 -0.3871 2.0628 44 1 2.5248 -2.8280 2.6780 45 1 3.0469 -5.6198 4.4311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690977972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:29 Heat of formation + Delta-G solvation = -119.416988 kcal Electronic energy + Delta-G solvation = -25989.768752 eV Core-core repulsion = 21956.505727 eV Total energy + Delta-G solvation = -4033.263024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.74790 -41.49514 -40.38196 -38.81588 -37.99865 -36.03862 -35.55857 -33.26946 -31.38495 -29.81107 -28.95891 -27.05460 -26.70822 -25.76672 -24.76654 -22.37580 -22.06648 -20.96699 -19.95523 -19.84734 -18.77680 -17.76483 -17.51546 -17.08718 -16.76522 -16.71364 -16.60153 -16.38760 -16.03900 -15.92597 -15.51826 -15.34943 -15.02981 -14.73724 -14.44810 -14.36644 -13.78079 -13.50384 -13.45173 -13.37784 -13.13677 -13.03188 -12.94750 -12.58298 -12.54902 -12.40288 -12.21528 -12.16230 -12.09609 -11.95812 -11.45171 -11.31100 -11.18536 -10.84814 -10.28319 -10.18316 -9.98496 -9.24027 -8.45621 -5.93636 1.38260 1.42141 1.45699 1.54334 1.92219 2.07630 2.30496 2.88328 3.18073 3.21575 3.37945 3.40777 3.44250 3.66535 3.82737 3.86084 4.05888 4.10909 4.25689 4.29583 4.36403 4.45682 4.49300 4.53805 4.57347 4.63858 4.64522 4.73851 4.81407 4.86195 4.94907 4.96146 5.05634 5.15427 5.20833 5.29874 5.42484 5.45073 5.85395 6.05015 6.17000 6.45061 6.62701 7.14214 7.15022 7.58784 8.15272 8.71661 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.001953 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.227576 B =14333.135018 C =14717.581324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.052 3.948 4 C 0.128 3.872 5 N -0.710 5.710 6 C 0.531 3.469 7 O -0.577 6.577 8 C -0.142 4.142 9 C 0.090 3.910 10 F -0.211 7.211 11 C -0.112 4.112 12 C -0.138 4.138 13 C -0.119 4.119 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.616 6.616 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.275 1.275 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.417 0.583 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 26.431 -4.478 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.076 4.076 4 C 0.004 3.996 5 N -0.363 5.363 6 C 0.318 3.682 7 O -0.457 6.457 8 C -0.146 4.146 9 C 0.035 3.965 10 F -0.192 7.192 11 C -0.149 4.149 12 C -0.175 4.175 13 C -0.157 4.157 14 C -0.070 4.070 15 C 0.227 3.773 16 O -0.503 6.503 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.199 1.199 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.254 0.746 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.978 25.568 -6.043 26.441 hybrid contribution -0.210 -0.670 1.214 1.402 sum 2.768 24.899 -4.829 25.513 Atomic orbital electron populations 1.22460 0.86959 1.02350 1.00554 1.61331 1.08842 1.13206 1.43047 1.22263 1.01998 0.87344 0.95977 1.21125 0.98763 0.81488 0.98248 1.45815 1.57270 1.13249 1.19949 1.20475 0.79115 0.86821 0.81788 1.90718 1.42879 1.75950 1.36104 1.22882 0.98081 0.90989 1.02636 1.21738 0.91391 0.78967 1.04432 1.92739 1.92499 1.37098 1.96851 1.22846 0.98691 0.93977 0.99417 1.22986 1.03111 0.96088 0.95321 1.22869 1.02597 0.95472 0.94765 1.21738 1.02404 0.89834 0.93053 1.20853 0.83702 0.88957 0.83833 1.90478 1.45174 1.81511 1.33088 1.41925 1.50082 1.06971 1.22232 1.19628 1.34300 0.84143 1.08002 0.90487 1.25998 0.96366 1.04180 0.94746 1.69659 1.38149 1.37080 1.11177 0.84958 0.78583 0.77149 0.77835 1.19736 1.19541 1.19941 0.90926 0.92618 0.94637 0.88070 0.92004 0.92490 0.92459 0.74563 0.87488 0.88956 0.90055 0.88598 0.88069 0.90531 0.90376 0.90365 0.86593 0.90907 0.76931 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 8.96 127.69 1.14 1.91 16 2 N -0.54 -16.21 4.50 -927.03 -4.17 -20.39 16 3 C 0.05 1.00 5.07 86.30 0.44 1.44 16 4 C 0.13 2.71 5.60 86.38 0.48 3.19 16 5 N -0.71 -10.81 5.44 -463.06 -2.52 -13.33 16 6 C 0.53 10.46 6.93 87.65 0.61 11.07 16 7 O -0.58 -17.25 15.90 -3.04 -0.05 -17.30 16 8 C -0.14 -1.91 1.26 -52.40 -0.07 -1.97 16 9 C 0.09 0.80 6.96 71.98 0.50 1.30 16 10 F -0.21 -2.51 14.57 44.97 0.66 -1.86 16 11 C -0.11 -1.27 6.96 31.12 0.22 -1.05 16 12 C -0.14 -1.60 7.56 31.12 0.24 -1.37 16 13 C -0.12 -1.81 6.97 31.12 0.22 -1.60 16 14 C 0.06 1.94 5.45 85.56 0.47 2.41 16 15 C 0.44 20.39 7.47 87.66 0.66 21.05 16 16 O -0.62 -33.77 13.91 -3.06 -0.04 -33.81 16 17 N -0.57 -28.88 5.29 -306.98 -1.62 -30.51 16 18 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -48.97 13.05 21.66 0.28 -48.68 16 22 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H 0.07 2.07 6.47 -2.39 -0.02 2.06 16 27 H 0.06 2.23 5.82 -2.38 -0.01 2.22 16 28 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.10 1.56 7.93 -2.39 -0.02 1.54 16 30 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 31 H 0.06 1.39 6.55 -2.39 -0.02 1.37 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.42 3.24 7.37 -92.70 -0.68 2.55 16 34 H 0.11 0.41 7.03 -2.39 -0.02 0.39 16 35 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 37 H 0.10 0.79 8.06 -2.39 -0.02 0.77 16 38 H 0.10 1.11 6.44 -2.39 -0.02 1.10 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 41 H 0.08 1.53 7.43 -2.39 -0.02 1.51 16 42 H 0.12 3.11 7.93 -2.39 -0.02 3.09 16 43 H 0.07 2.01 8.12 -2.39 -0.02 2.00 16 44 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 45 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -74.13 367.31 0.34 -73.78 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.39 Total: 28.93 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 6.18 Total: 18.31 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -8.03 Total: -112.91 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.09 Total: -51.11 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.66 Total: -1.86 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.13 0.34 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690977972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.633 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds