Wall clock time and date at job start Fri Apr 10 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 119.99892 * 2 1 4 4 C 1.52994 * 109.47162 * 269.99514 * 3 2 1 5 5 H 1.09007 * 112.95862 * 287.14685 * 4 3 2 6 6 C 1.53934 * 113.76096 * 155.49645 * 4 3 2 7 7 C 1.53935 * 86.45688 * 221.80153 * 6 4 3 8 8 N 1.47961 * 113.85909 * 58.88682 * 4 3 2 9 9 C 1.46902 * 111.00005 * 251.91231 * 8 4 3 10 10 C 1.50702 * 109.47267 * 189.99947 * 9 8 4 11 11 O 1.21296 * 119.99494 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00134 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00203 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00145 * 359.97438 * 13 12 10 15 15 C 1.38944 * 120.00446 * 179.97438 * 13 12 10 16 16 N 1.31407 * 120.00223 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99810 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47268 * 89.99795 * 17 15 13 19 19 H 1.48499 * 109.47381 * 209.99744 * 17 15 13 20 20 H 1.48499 * 109.47203 * 329.99833 * 17 15 13 21 21 C 1.34780 * 120.00169 * 179.97438 * 2 1 3 22 22 O 1.21271 * 120.00198 * 180.02562 * 21 2 1 23 23 C 1.50698 * 119.99555 * 0.02562 * 21 2 1 24 24 C 1.53006 * 109.47072 * 180.02562 * 23 21 2 25 25 C 1.53000 * 109.47216 * 180.02562 * 24 23 21 26 26 F 1.39901 * 109.46942 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47013 * 90.00194 * 1 2 3 28 28 H 1.09001 * 109.47915 * 210.00052 * 1 2 3 29 29 H 1.08998 * 109.47280 * 330.00454 * 1 2 3 30 30 H 1.09002 * 109.46652 * 149.99923 * 3 2 1 31 31 H 1.08998 * 109.47142 * 29.99829 * 3 2 1 32 32 H 1.09002 * 113.73279 * 336.21344 * 6 4 3 33 33 H 1.09002 * 113.73078 * 107.39042 * 6 4 3 34 34 H 1.09001 * 113.76001 * 138.09365 * 7 6 4 35 35 H 1.09000 * 113.75996 * 269.45181 * 7 6 4 36 36 H 1.08997 * 109.47246 * 310.00098 * 9 8 4 37 37 H 1.09007 * 109.46957 * 69.99875 * 9 8 4 38 38 H 0.97001 * 119.99910 * 359.97438 * 12 10 9 39 39 H 0.97004 * 119.99977 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47743 * 299.99878 * 23 21 2 41 41 H 1.09000 * 109.47360 * 59.99992 * 23 21 2 42 42 H 1.08997 * 109.46609 * 299.99912 * 24 23 21 43 43 H 1.09000 * 109.47160 * 59.99717 * 24 23 21 44 44 H 1.08993 * 109.47016 * 299.99942 * 25 24 23 45 45 H 1.08994 * 109.47001 * 59.99934 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 3.2145 1.1119 -1.9419 6 6 2.6542 3.2283 -1.5999 7 6 1.7771 3.1176 -2.8601 8 7 1.2194 1.8914 -2.2399 9 6 1.0725 0.8190 -3.2331 10 6 -0.0473 1.1624 -4.1813 11 8 -0.6627 2.1985 -4.0430 12 7 -0.3655 0.3180 -5.1824 13 6 -1.3838 0.6307 -6.0454 14 1 -1.9314 1.5535 -5.9228 15 6 -1.7115 -0.2396 -7.0777 16 7 -2.6879 0.0599 -7.9046 17 14 -0.7641 -1.8354 -7.2902 18 1 -1.4239 -2.9110 -6.5071 19 1 -0.7428 -2.2110 -8.7267 20 1 0.6277 -1.6531 -6.8056 21 6 2.1389 -1.1672 0.0005 22 8 3.3516 -1.1672 0.0010 23 6 1.3853 -2.4723 0.0005 24 6 2.3796 -3.6353 0.0018 25 6 1.6145 -4.9603 0.0012 26 9 2.5237 -6.0236 0.0018 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3635 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 3.1498 1.1383 0.5139 31 1 1.6083 2.0284 0.5138 32 1 2.2021 3.8161 -0.8010 33 1 3.6853 3.5147 -1.8069 34 1 1.0542 3.9267 -2.9646 35 1 2.3419 2.9300 -3.7732 36 1 2.0020 0.7117 -3.7921 37 1 0.8439 -0.1179 -2.7250 38 1 0.1265 -0.5107 -5.2927 39 1 -2.9170 -0.5479 -8.6250 40 1 0.7583 -2.5299 0.8903 41 1 0.7590 -2.5302 -0.8897 42 1 3.0068 -3.5779 -0.8877 43 1 3.0056 -3.5771 0.8922 44 1 0.9869 -5.0178 0.8904 45 1 0.9889 -5.0181 -0.8895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691395637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:14 Heat of formation + Delta-G solvation = -85.717045 kcal Electronic energy + Delta-G solvation = -27235.126885 eV Core-core repulsion = 23203.325200 eV Total energy + Delta-G solvation = -4031.801685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -47.82822 -40.55335 -39.49318 -37.89309 -35.55104 -34.32569 -33.99362 -31.76253 -30.93737 -29.40642 -27.43122 -26.29337 -25.87946 -23.58773 -23.51561 -22.04365 -19.72790 -19.41958 -19.12295 -18.37619 -17.25237 -16.84609 -16.50726 -16.14564 -15.99842 -15.82531 -15.40924 -15.03292 -14.92989 -14.82000 -14.21438 -13.72451 -13.67826 -13.49328 -13.23281 -12.91819 -12.73931 -12.63608 -12.43014 -12.21039 -12.10862 -11.78414 -11.68625 -11.56571 -11.42518 -11.31197 -11.20667 -10.93239 -10.85663 -10.63782 -10.58250 -10.01501 -9.91925 -9.60474 -8.98883 -8.56172 -8.34981 -8.21686 -6.35079 -3.86564 2.47653 2.82948 2.99115 3.02674 3.11794 3.68765 3.92758 4.06373 4.13348 4.42539 4.46122 4.48781 4.68959 4.74245 4.78329 4.83954 4.91475 5.06562 5.10391 5.15831 5.22988 5.30363 5.39071 5.39600 5.42615 5.52006 5.57920 5.65984 5.67315 5.69904 5.75751 5.86368 5.91988 5.93385 6.04667 6.28021 6.35833 6.55301 7.11623 7.26918 7.53952 8.02727 8.09846 8.55749 8.91024 9.38289 9.78804 10.78024 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.004597 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.469150 B = 6089.271852 C = 8626.839399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.606 5.606 3 C 0.139 3.861 4 C 0.007 3.993 5 H 0.078 0.922 6 C -0.139 4.139 7 C 0.019 3.981 8 N -0.442 5.442 9 C 0.011 3.989 10 C 0.453 3.547 11 O -0.559 6.559 12 N -0.592 5.592 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.043 3.957 16 N -0.881 5.881 17 Si 0.877 3.123 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.270 1.270 21 C 0.512 3.488 22 O -0.545 6.545 23 C -0.140 4.140 24 C -0.138 4.138 25 C 0.061 3.939 26 F -0.219 7.219 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.369 0.631 39 H 0.274 0.726 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.534 -4.339 17.748 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C 0.016 3.984 4 C -0.103 4.103 5 H 0.096 0.904 6 C -0.178 4.178 7 C -0.109 4.109 8 N -0.165 5.165 9 C -0.121 4.121 10 C 0.238 3.762 11 O -0.441 6.441 12 N -0.231 5.231 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.160 4.160 16 N -0.521 5.521 17 Si 0.704 3.296 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.196 1.196 21 C 0.300 3.700 22 O -0.422 6.422 23 C -0.180 4.180 24 C -0.176 4.176 25 C 0.006 3.994 26 F -0.200 7.200 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.964 -3.705 17.964 20.415 hybrid contribution 1.242 -1.558 -1.045 2.250 sum 10.206 -5.263 16.920 20.448 Atomic orbital electron populations 1.21890 0.78517 1.02597 1.03229 1.47768 1.07539 1.05706 1.72824 1.21408 0.97458 0.84457 0.95071 1.23964 0.93226 0.96871 0.96280 0.90380 1.23398 1.00212 0.94837 0.99323 1.23742 0.96713 0.95216 0.95259 1.68444 1.30028 1.02512 1.15554 1.22459 0.98047 0.96906 0.94698 1.19591 0.87080 0.86038 0.83444 1.90562 1.54327 1.25612 1.73582 1.42233 1.33021 1.20022 1.27858 1.19415 1.09392 1.08143 1.06389 0.86282 1.25018 0.96735 0.98207 0.96063 1.69616 1.28387 1.37232 1.16832 0.86712 0.79940 0.84060 0.78921 1.19571 1.20100 1.19602 1.20574 0.87974 0.85442 0.76014 1.90694 1.13962 1.87471 1.50106 1.21603 0.99306 0.92246 1.04889 1.21909 0.98398 0.92009 1.05279 1.22014 0.90302 0.83480 1.03640 1.92770 1.70229 1.58808 1.98192 0.91297 0.91644 0.90653 0.89693 0.89836 0.89105 0.91157 0.88598 0.91753 0.93137 0.89769 0.79834 0.91588 0.88508 0.88308 0.89956 0.90073 0.90743 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 9.93 59.84 0.59 1.34 16 2 N -0.61 -6.43 2.82 -181.58 -0.51 -6.94 16 3 C 0.14 1.48 5.59 -4.04 -0.02 1.45 16 4 C 0.01 0.09 3.57 -66.65 -0.24 -0.15 16 5 H 0.08 1.03 7.79 -51.92 -0.40 0.63 16 6 C -0.14 -1.51 7.83 -25.80 -0.20 -1.71 16 7 C 0.02 0.28 6.78 -2.57 -0.02 0.26 16 8 N -0.44 -6.63 5.34 -231.83 -1.24 -7.87 16 9 C 0.01 0.19 5.03 -4.97 -0.03 0.16 16 10 C 0.45 10.04 7.59 -10.99 -0.08 9.95 16 11 O -0.56 -14.51 15.13 5.54 0.08 -14.42 16 12 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 13 C -0.30 -8.48 10.16 -14.94 -0.15 -8.64 16 14 H 0.12 3.79 7.39 -52.48 -0.39 3.41 16 15 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 16 N -0.88 -25.44 13.96 55.50 0.77 -24.66 16 17 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 21 C 0.51 5.87 7.67 -10.98 -0.08 5.78 16 22 O -0.54 -8.08 15.56 5.56 0.09 -7.99 16 23 C -0.14 -1.14 4.25 -27.88 -0.12 -1.26 16 24 C -0.14 -1.23 4.96 -26.73 -0.13 -1.36 16 25 C 0.06 0.46 7.55 37.16 0.28 0.75 16 26 F -0.22 -2.40 17.36 2.25 0.04 -2.36 16 27 H 0.07 0.80 6.75 -51.93 -0.35 0.45 16 28 H 0.06 0.44 6.44 -51.93 -0.33 0.10 16 29 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 30 H 0.08 0.92 7.42 -51.93 -0.39 0.53 16 31 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 32 H 0.09 0.88 7.94 -51.93 -0.41 0.47 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.55 8.10 -51.93 -0.42 1.12 16 35 H 0.06 0.95 7.79 -51.93 -0.40 0.55 16 36 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 37 H 0.08 1.28 7.07 -51.92 -0.37 0.91 16 38 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.10 0.56 7.40 -51.93 -0.38 0.17 16 41 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 42 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -34.07 370.30 -7.25 -41.32 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.99 Total: 9.14 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -0.30 Total: 7.65 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -1.03 Total: -53.40 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.17 Total: -22.41 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.07 -7.25 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691395637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.397 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds