Wall clock time and date at job start Fri Apr 10 2020 18:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 119.99892 * 2 1 4 4 C 1.52994 * 109.47162 * 269.99514 * 3 2 1 5 5 H 1.09007 * 112.95862 * 287.14685 * 4 3 2 6 6 C 1.53934 * 113.76096 * 155.49645 * 4 3 2 7 7 C 1.53935 * 86.45688 * 221.80153 * 6 4 3 8 8 N 1.47961 * 113.85909 * 58.88682 * 4 3 2 9 9 C 1.46902 * 111.00005 * 251.91231 * 8 4 3 10 10 C 1.50702 * 109.47267 * 189.99947 * 9 8 4 11 11 O 1.21296 * 119.99494 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00134 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00203 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00145 * 359.97438 * 13 12 10 15 15 C 1.38944 * 120.00446 * 179.97438 * 13 12 10 16 16 N 1.31407 * 120.00223 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99810 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47268 * 89.99795 * 17 15 13 19 19 H 1.48499 * 109.47381 * 209.99744 * 17 15 13 20 20 H 1.48499 * 109.47203 * 329.99833 * 17 15 13 21 21 C 1.34780 * 120.00169 * 179.97438 * 2 1 3 22 22 O 1.21271 * 120.00198 * 180.02562 * 21 2 1 23 23 C 1.50698 * 119.99555 * 0.02562 * 21 2 1 24 24 C 1.53006 * 109.47072 * 180.02562 * 23 21 2 25 25 C 1.53000 * 109.47216 * 180.02562 * 24 23 21 26 26 F 1.39901 * 109.46942 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47013 * 90.00194 * 1 2 3 28 28 H 1.09001 * 109.47915 * 210.00052 * 1 2 3 29 29 H 1.08998 * 109.47280 * 330.00454 * 1 2 3 30 30 H 1.09002 * 109.46652 * 149.99923 * 3 2 1 31 31 H 1.08998 * 109.47142 * 29.99829 * 3 2 1 32 32 H 1.09002 * 113.73279 * 336.21344 * 6 4 3 33 33 H 1.09002 * 113.73078 * 107.39042 * 6 4 3 34 34 H 1.09001 * 113.76001 * 138.09365 * 7 6 4 35 35 H 1.09000 * 113.75996 * 269.45181 * 7 6 4 36 36 H 1.08997 * 109.47246 * 310.00098 * 9 8 4 37 37 H 1.09007 * 109.46957 * 69.99875 * 9 8 4 38 38 H 0.97001 * 119.99910 * 359.97438 * 12 10 9 39 39 H 0.97004 * 119.99977 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47743 * 299.99878 * 23 21 2 41 41 H 1.09000 * 109.47360 * 59.99992 * 23 21 2 42 42 H 1.08997 * 109.46609 * 299.99912 * 24 23 21 43 43 H 1.09000 * 109.47160 * 59.99717 * 24 23 21 44 44 H 1.08993 * 109.47016 * 299.99942 * 25 24 23 45 45 H 1.08994 * 109.47001 * 59.99934 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 3.2145 1.1119 -1.9419 6 6 2.6542 3.2283 -1.5999 7 6 1.7771 3.1176 -2.8601 8 7 1.2194 1.8914 -2.2399 9 6 1.0725 0.8190 -3.2331 10 6 -0.0473 1.1624 -4.1813 11 8 -0.6627 2.1985 -4.0430 12 7 -0.3655 0.3180 -5.1824 13 6 -1.3838 0.6307 -6.0454 14 1 -1.9314 1.5535 -5.9228 15 6 -1.7115 -0.2396 -7.0777 16 7 -2.6879 0.0599 -7.9046 17 14 -0.7641 -1.8354 -7.2902 18 1 -1.4239 -2.9110 -6.5071 19 1 -0.7428 -2.2110 -8.7267 20 1 0.6277 -1.6531 -6.8056 21 6 2.1389 -1.1672 0.0005 22 8 3.3516 -1.1672 0.0010 23 6 1.3853 -2.4723 0.0005 24 6 2.3796 -3.6353 0.0018 25 6 1.6145 -4.9603 0.0012 26 9 2.5237 -6.0236 0.0018 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3635 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 3.1498 1.1383 0.5139 31 1 1.6083 2.0284 0.5138 32 1 2.2021 3.8161 -0.8010 33 1 3.6853 3.5147 -1.8069 34 1 1.0542 3.9267 -2.9646 35 1 2.3419 2.9300 -3.7732 36 1 2.0020 0.7117 -3.7921 37 1 0.8439 -0.1179 -2.7250 38 1 0.1265 -0.5107 -5.2927 39 1 -2.9170 -0.5479 -8.6250 40 1 0.7583 -2.5299 0.8903 41 1 0.7590 -2.5302 -0.8897 42 1 3.0068 -3.5779 -0.8877 43 1 3.0056 -3.5771 0.8922 44 1 0.9869 -5.0178 0.8904 45 1 0.9889 -5.0181 -0.8895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691395637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:12 Heat of formation + Delta-G solvation = -111.475589 kcal Electronic energy + Delta-G solvation = -27236.243860 eV Core-core repulsion = 23203.325200 eV Total energy + Delta-G solvation = -4032.918659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.54138 -41.60262 -40.59494 -39.56688 -36.43825 -35.98653 -35.01633 -33.79188 -32.21501 -30.33824 -28.14864 -27.58179 -27.09080 -25.13168 -24.48364 -22.74019 -21.31485 -20.69995 -20.28833 -19.97535 -18.10300 -17.72026 -17.54934 -17.32985 -17.06630 -16.95202 -16.59650 -16.31356 -16.10120 -15.65689 -15.49217 -15.29604 -14.87153 -14.50199 -14.41067 -14.33155 -14.02624 -13.87880 -13.62838 -13.35759 -13.02594 -12.87046 -12.81667 -12.45536 -12.42581 -12.41089 -12.34730 -12.03472 -11.99085 -11.89493 -11.68590 -11.53401 -11.51896 -10.80293 -10.47588 -10.26618 -9.87455 -9.45837 -8.43128 -6.03669 1.27708 1.31524 1.40763 1.64301 1.91084 2.03914 2.19761 2.63105 3.09553 3.16591 3.43657 3.60401 3.76806 3.79293 3.88685 4.04913 4.10077 4.20114 4.22016 4.26939 4.30966 4.35535 4.37152 4.43055 4.47615 4.61012 4.67098 4.75577 4.81192 4.83928 4.86630 4.97855 5.02364 5.11540 5.24863 5.27455 5.37294 5.50856 5.57385 5.90018 6.01204 6.45513 6.56761 6.85814 7.19633 7.36576 7.92501 8.74341 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.004597 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.469150 B = 6089.271852 C = 8626.839399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.605 5.605 3 C 0.139 3.861 4 C 0.015 3.985 5 H 0.071 0.929 6 C -0.117 4.117 7 C 0.006 3.994 8 N -0.455 5.455 9 C 0.026 3.974 10 C 0.456 3.544 11 O -0.602 6.602 12 N -0.592 5.592 13 C -0.326 4.326 14 H 0.058 0.942 15 C -0.010 4.010 16 N -0.932 5.932 17 Si 0.958 3.042 18 H -0.252 1.252 19 H -0.275 1.275 20 H -0.239 1.239 21 C 0.506 3.494 22 O -0.584 6.584 23 C -0.135 4.135 24 C -0.133 4.133 25 C 0.058 3.942 26 F -0.240 7.240 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.386 0.614 39 H 0.279 0.721 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.851 -6.432 19.529 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C 0.016 3.984 4 C -0.095 4.095 5 H 0.089 0.911 6 C -0.155 4.155 7 C -0.123 4.123 8 N -0.178 5.178 9 C -0.106 4.106 10 C 0.243 3.757 11 O -0.485 6.485 12 N -0.234 5.234 13 C -0.455 4.455 14 H 0.076 0.924 15 C -0.209 4.209 16 N -0.573 5.573 17 Si 0.778 3.222 18 H -0.176 1.176 19 H -0.200 1.200 20 H -0.163 1.163 21 C 0.295 3.705 22 O -0.465 6.465 23 C -0.174 4.174 24 C -0.172 4.172 25 C 0.003 3.997 26 F -0.221 7.221 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.221 0.779 39 H 0.089 0.911 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.280 -5.790 19.771 23.024 hybrid contribution 0.765 -0.747 -1.566 1.896 sum 11.045 -6.537 18.205 22.275 Atomic orbital electron populations 1.21957 0.77553 1.04483 1.02188 1.47867 1.08092 1.05552 1.72147 1.21429 0.97956 0.85066 0.93983 1.23959 0.91388 0.97720 0.96480 0.91143 1.23318 1.00669 0.94139 0.97353 1.23750 0.97025 0.94569 0.96918 1.68467 1.31995 1.02056 1.15294 1.22334 0.95869 0.98309 0.94061 1.20644 0.87223 0.84756 0.83055 1.90546 1.56016 1.27454 1.74510 1.42066 1.32514 1.21106 1.27739 1.18983 1.11048 1.06857 1.08598 0.92405 1.26012 0.97546 1.02618 0.94726 1.69790 1.30435 1.39328 1.17703 0.85463 0.79679 0.77906 0.79118 1.17606 1.20017 1.16295 1.21167 0.87688 0.86537 0.75058 1.90679 1.15782 1.88062 1.51975 1.21642 0.99015 0.89802 1.06984 1.21821 0.98446 0.93300 1.03587 1.22220 0.89904 0.81845 1.05726 1.92728 1.71197 1.59847 1.98349 0.93660 0.88512 0.90216 0.89694 0.88347 0.87577 0.89075 0.91066 0.92411 0.91660 0.87623 0.77860 0.91117 0.85386 0.86947 0.92216 0.91335 0.88050 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 9.93 127.77 1.27 2.52 16 2 N -0.61 -11.22 2.82 -846.79 -2.39 -13.61 16 3 C 0.14 2.61 5.59 86.38 0.48 3.09 16 4 C 0.01 0.33 3.57 45.02 0.16 0.49 16 5 H 0.07 1.71 7.79 -2.38 -0.02 1.69 16 6 C -0.12 -2.26 7.83 31.24 0.24 -2.02 16 7 C 0.01 0.18 6.78 86.34 0.59 0.77 16 8 N -0.45 -13.07 5.34 -887.37 -4.74 -17.81 16 9 C 0.03 0.83 5.03 85.56 0.43 1.26 16 10 C 0.46 20.31 7.59 87.66 0.67 20.98 16 11 O -0.60 -32.40 15.13 -3.08 -0.05 -32.44 16 12 N -0.59 -27.74 5.09 -306.99 -1.56 -29.31 16 13 C -0.33 -18.81 10.16 84.04 0.85 -17.95 16 14 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 15 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 16 N -0.93 -55.46 13.96 21.66 0.30 -55.16 16 17 Si 0.96 38.49 27.74 68.60 1.90 40.39 16 18 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 19 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.24 -8.33 6.52 99.48 0.65 -7.68 16 21 C 0.51 10.37 7.67 87.66 0.67 11.04 16 22 O -0.58 -16.54 15.56 -3.00 -0.05 -16.58 16 23 C -0.14 -1.74 4.25 29.85 0.13 -1.62 16 24 C -0.13 -2.10 4.96 30.60 0.15 -1.95 16 25 C 0.06 0.72 7.55 71.98 0.54 1.27 16 26 F -0.24 -4.88 17.36 44.97 0.78 -4.10 16 27 H 0.04 0.95 6.75 -2.38 -0.02 0.93 16 28 H 0.10 0.88 6.44 -2.39 -0.02 0.87 16 29 H 0.08 1.19 7.89 -2.39 -0.02 1.17 16 30 H 0.08 1.65 7.42 -2.39 -0.02 1.63 16 31 H 0.10 1.56 7.66 -2.39 -0.02 1.54 16 32 H 0.11 1.77 7.94 -2.39 -0.02 1.75 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 2.37 8.10 -2.39 -0.02 2.35 16 35 H 0.06 1.70 7.79 -2.39 -0.02 1.69 16 36 H 0.07 1.92 7.69 -2.39 -0.02 1.90 16 37 H 0.11 2.93 7.07 -2.38 -0.02 2.92 16 38 H 0.39 15.28 5.76 -92.71 -0.53 14.74 16 39 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.13 0.87 7.40 -2.39 -0.02 0.85 16 41 H 0.11 1.21 8.11 -2.39 -0.02 1.19 16 42 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 43 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -79.78 370.30 1.26 -78.52 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.41 Total: 32.32 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.65 Total: 17.78 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -8.39 Total: -115.88 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.09 Total: -49.03 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.78 Total: -4.10 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Total: -79.78 1.26 -78.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691395637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.955 kcal (2) G-P(sol) polarization free energy of solvation -79.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds