Wall clock time and date at job start Fri Apr 10 2020 18:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47088 * 2 1 4 4 C 1.46817 * 124.36246 * 89.99555 * 3 2 1 5 5 C 1.54574 * 105.56184 * 196.93854 * 4 3 2 6 6 C 1.54197 * 101.66738 * 334.91994 * 5 4 3 7 7 C 1.52504 * 109.96527 * 265.55958 * 6 5 4 8 8 C 1.53274 * 109.41867 * 178.21644 * 7 6 5 9 9 N 1.46931 * 108.72948 * 53.81860 * 8 7 6 10 10 S 1.65601 * 120.60534 * 125.82114 * 9 8 7 11 11 O 1.42095 * 106.40062 * 23.56382 * 10 9 8 12 12 O 1.42105 * 106.40096 * 156.48229 * 10 9 8 13 13 C 1.76191 * 107.21814 * 270.02177 * 10 9 8 14 14 H 1.08001 * 120.00455 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00052 * 179.97438 * 13 10 9 16 16 N 1.31520 * 119.99726 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00337 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47171 * 90.00106 * 17 15 13 19 19 H 1.48501 * 109.47088 * 210.00256 * 17 15 13 20 20 H 1.48500 * 109.46763 * 330.00177 * 17 15 13 21 21 C 1.46934 * 118.79293 * 305.84490 * 9 8 7 22 22 C 1.52499 * 109.96742 * 143.24452 * 6 5 4 23 23 C 1.34760 * 124.47589 * 269.96083 * 3 2 1 24 24 O 1.21279 * 124.99153 * 359.35191 * 23 3 2 25 25 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47498 * 300.00376 * 1 2 3 27 27 H 1.09006 * 109.47213 * 60.00390 * 1 2 3 28 28 H 1.08992 * 109.47027 * 239.99865 * 2 1 3 29 29 H 1.08998 * 109.46859 * 119.99584 * 2 1 3 30 30 H 1.09002 * 110.24204 * 77.88981 * 4 3 2 31 31 H 1.08998 * 110.24277 * 315.98654 * 4 3 2 32 32 H 1.08996 * 110.98972 * 93.02062 * 5 4 3 33 33 H 1.09007 * 110.98607 * 216.82412 * 5 4 3 34 34 H 1.09000 * 109.47910 * 298.20180 * 7 6 5 35 35 H 1.08997 * 109.47871 * 58.23825 * 7 6 5 36 36 H 1.08992 * 109.59724 * 294.03932 * 8 7 6 37 37 H 1.09001 * 109.59384 * 173.58608 * 8 7 6 38 38 H 0.97005 * 119.99743 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.59307 * 294.37035 * 21 9 8 40 40 H 1.08999 * 109.71428 * 173.99235 * 21 9 8 41 41 H 1.08998 * 109.47792 * 301.75779 * 22 6 5 42 42 H 1.09006 * 109.48090 * 61.77274 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1625 1.2119 5 6 2.3555 3.6364 0.7502 6 6 2.7444 3.4824 -0.7339 7 6 4.2572 3.5953 -0.8902 8 6 4.6337 3.3962 -2.3626 9 7 3.8562 4.3377 -3.1798 10 16 4.6153 5.3693 -4.2295 11 8 5.8686 4.7757 -4.5394 12 8 3.6541 5.7161 -5.2170 13 6 4.9716 6.8484 -3.3408 14 1 4.6901 6.9353 -2.3018 15 6 5.6097 7.8951 -3.9719 16 7 5.9520 7.7895 -5.2374 17 14 5.9881 9.4631 -3.0297 18 1 7.3285 9.3513 -2.4006 19 1 5.9744 10.6174 -3.9638 20 1 4.9620 9.6669 -1.9757 21 6 2.3927 4.3475 -3.0485 22 6 2.0323 4.5395 -1.5713 23 6 2.2733 2.1001 -1.1109 24 8 2.1429 1.6951 -2.2466 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2491 1.8629 1.6444 31 1 1.4931 2.0277 1.9383 32 1 1.3827 4.1177 0.8510 33 1 3.1201 4.1862 1.2992 34 1 4.5840 4.5819 -0.5617 35 1 4.7433 2.8307 -0.2842 36 1 4.4037 2.3743 -2.6637 37 1 5.6982 3.5884 -2.4969 38 1 6.4013 8.5258 -5.6813 39 1 1.9875 3.3999 -3.4035 40 1 1.9764 5.1660 -3.6357 41 1 0.9545 4.4385 -1.4441 42 1 2.3452 5.5319 -1.2466 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192965342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:20 Heat of formation + Delta-G solvation = -124.422335 kcal Electronic energy + Delta-G solvation = -26322.905945 eV Core-core repulsion = 22622.087292 eV Total energy + Delta-G solvation = -3700.818653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12252 -37.18948 -36.45962 -35.18944 -33.92487 -33.82515 -33.00396 -30.90254 -30.64912 -28.58681 -26.06707 -25.46006 -23.76656 -23.06017 -21.60689 -20.87085 -18.98145 -18.27737 -17.42712 -16.71306 -16.24174 -15.85776 -15.26132 -14.97668 -14.89060 -14.28542 -14.15423 -13.91050 -13.85624 -13.61533 -13.44808 -13.10251 -12.99115 -12.49935 -12.26590 -12.12108 -12.09633 -11.95796 -11.84111 -11.49784 -11.30036 -11.22029 -11.18805 -10.83304 -10.63940 -10.55403 -10.42543 -10.18805 -9.93515 -9.92293 -9.32914 -9.20299 -8.79291 -8.78409 -7.97336 -6.63704 -5.25661 2.38225 2.67677 2.90932 3.08488 3.15337 3.21151 4.09419 4.24536 4.37075 4.61265 4.65968 4.69337 4.78414 4.93287 4.95421 5.12777 5.15306 5.23737 5.30597 5.45655 5.48868 5.63009 5.64617 5.74174 5.77998 5.89147 5.90786 5.91817 5.94416 6.09323 6.11354 6.22228 6.31084 6.45981 6.49299 6.60282 6.72206 6.98337 7.10600 7.38211 7.73842 8.03340 8.27787 8.94263 10.29532 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.024628 B = 0.004318 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.654978 B = 6483.249954 C = 7010.959133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.628 5.628 4 C 0.105 3.895 5 C -0.127 4.127 6 C -0.085 4.085 7 C -0.113 4.113 8 C 0.126 3.874 9 N -1.006 6.006 10 S 2.716 3.284 11 O -1.006 7.006 12 O -1.005 7.005 13 C -1.019 5.019 14 H 0.101 0.899 15 C 0.132 3.868 16 N -0.846 5.846 17 Si 0.919 3.081 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.263 1.263 21 C 0.118 3.882 22 C -0.112 4.112 23 C 0.529 3.471 24 O -0.511 6.511 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.290 0.710 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 -10.422 17.052 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.001 3.999 3 N -0.364 5.364 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.089 4.089 7 C -0.152 4.152 8 C -0.001 4.001 9 N -0.840 5.840 10 S 2.817 3.183 11 O -0.997 6.997 12 O -0.995 6.995 13 C -1.152 5.152 14 H 0.120 0.880 15 C -0.085 4.085 16 N -0.476 5.476 17 Si 0.743 3.257 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.187 1.187 21 C -0.008 4.008 22 C -0.151 4.151 23 C 0.316 3.684 24 O -0.385 6.385 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.245 -10.896 15.333 20.538 hybrid contribution 0.146 1.165 1.255 1.718 sum -8.098 -9.731 16.588 20.867 Atomic orbital electron populations 1.22157 0.95988 1.02114 1.02445 1.21276 0.94187 0.81523 1.02907 1.48471 1.66831 1.13664 1.07389 1.22056 1.01121 0.91241 0.87409 1.22747 1.03389 0.95438 0.94951 1.20977 0.98238 0.93871 0.95811 1.21802 0.91715 1.03242 0.98462 1.21192 0.96343 0.93724 0.88823 1.58025 1.13426 1.52735 1.59863 1.00463 0.71908 0.73459 0.72474 1.93341 1.43640 1.79144 1.83563 1.93346 1.63408 1.84487 1.58308 1.30667 1.52546 1.21034 1.10985 0.88036 1.24755 0.90253 0.99368 0.94132 1.69912 1.33352 1.34273 1.10085 0.86197 0.79459 0.80089 0.79973 1.19266 1.20043 1.18716 1.21379 0.80959 1.03598 0.94856 1.21768 0.98933 0.97991 0.96423 1.20798 0.75915 0.87339 0.84301 1.90685 1.52149 1.75042 1.20600 0.91631 0.92615 0.92129 0.90093 0.90698 0.91271 0.90815 0.89886 0.88899 0.89667 0.91302 0.91988 0.89027 0.89971 0.90161 0.89377 0.91426 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.12 1.09 6.67 -4.04 -0.03 1.06 16 3 N -0.63 -6.71 2.94 -172.41 -0.51 -7.22 16 4 C 0.10 0.81 7.35 -3.04 -0.02 0.79 16 5 C -0.13 -1.12 6.20 -25.28 -0.16 -1.27 16 6 C -0.09 -1.11 0.55 -155.49 -0.08 -1.20 16 7 C -0.11 -1.59 4.78 -26.84 -0.13 -1.72 16 8 C 0.13 2.34 5.97 -3.67 -0.02 2.32 16 9 N -1.01 -21.78 3.28 -113.42 -0.37 -22.16 16 10 S 2.72 74.84 4.97 -107.50 -0.53 74.31 16 11 O -1.01 -30.32 16.72 -57.17 -0.96 -31.28 16 12 O -1.01 -30.46 16.73 -57.17 -0.96 -31.41 16 13 C -1.02 -28.17 9.75 30.60 0.30 -27.87 16 14 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 15 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 16 N -0.85 -25.28 13.19 55.43 0.73 -24.55 16 17 Si 0.92 20.56 29.54 -169.99 -5.02 15.54 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 21 C 0.12 2.26 5.95 -3.67 -0.02 2.24 16 22 C -0.11 -1.65 4.79 -26.85 -0.13 -1.78 16 23 C 0.53 7.55 6.25 -10.93 -0.07 7.48 16 24 O -0.51 -9.21 13.75 5.56 0.08 -9.14 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.66 7.88 -51.93 -0.41 0.25 16 33 H 0.09 0.69 7.87 -51.92 -0.41 0.28 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.16 6.84 -51.93 -0.36 0.80 16 37 H 0.09 1.77 7.11 -51.93 -0.37 1.40 16 38 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 39 H 0.08 1.58 5.86 -51.93 -0.30 1.27 16 40 H 0.09 1.77 7.12 -51.93 -0.37 1.40 16 41 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -37.33 344.53 -8.83 -46.16 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.40 Total: 1.85 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -0.08 Total: -17.29 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.15 Total: -53.93 kcal Atomic # 8 Polarization: -69.99 SS G_CDS: -1.84 Total: -71.83 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 74.84 SS G_CDS: -0.53 Total: 74.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.33 -8.83 -46.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.267 kcal (2) G-P(sol) polarization free energy of solvation -37.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds