Wall clock time and date at job start Fri Apr 10 2020 18:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47281 * 2 1 4 4 C 1.46929 * 124.34957 * 90.00280 * 3 2 1 5 5 C 1.53816 * 105.34271 * 163.61796 * 4 3 2 6 6 C 1.53947 * 102.48562 * 24.68690 * 5 4 3 7 7 C 1.34504 * 124.35470 * 270.02481 * 3 2 1 8 8 O 1.21281 * 124.94429 * 0.35516 * 7 3 2 9 9 C 1.52199 * 110.67041 * 142.66874 * 5 4 3 10 10 C 1.53316 * 109.47854 * 182.95929 * 9 5 4 11 11 N 1.46925 * 108.70681 * 306.59251 * 10 9 5 12 12 S 1.65600 * 120.58540 * 234.37090 * 11 10 9 13 13 O 1.42108 * 106.40204 * 203.53814 * 12 11 10 14 14 O 1.42095 * 106.40305 * 336.45693 * 12 11 10 15 15 C 1.76204 * 107.21730 * 89.99952 * 12 11 10 16 16 H 1.07999 * 120.00128 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99559 * 179.97438 * 15 12 11 18 18 N 1.31511 * 119.99703 * 179.97438 * 17 15 12 19 19 Si 1.86803 * 120.00349 * 0.02562 * 17 15 12 20 20 H 1.48504 * 109.46832 * 90.00044 * 19 17 15 21 21 H 1.48497 * 109.46937 * 209.99928 * 19 17 15 22 22 H 1.48501 * 109.46856 * 329.99993 * 19 17 15 23 23 C 1.46944 * 118.83122 * 54.34647 * 11 10 9 24 24 C 1.52198 * 110.67455 * 266.70526 * 5 4 3 25 25 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47333 * 300.00298 * 1 2 3 27 27 H 1.09009 * 109.47108 * 59.99559 * 1 2 3 28 28 H 1.09001 * 109.46891 * 239.99982 * 2 1 3 29 29 H 1.09000 * 109.46867 * 120.00530 * 2 1 3 30 30 H 1.08993 * 110.27043 * 44.64835 * 4 3 2 31 31 H 1.09000 * 110.26624 * 282.58324 * 4 3 2 32 32 H 1.08996 * 110.51625 * 94.54957 * 6 5 4 33 33 H 1.09000 * 110.50507 * 217.26131 * 6 5 4 34 34 H 1.08996 * 109.46858 * 62.95270 * 9 5 4 35 35 H 1.09000 * 109.46817 * 302.95939 * 9 5 4 36 36 H 1.08997 * 109.59906 * 66.36105 * 10 9 5 37 37 H 1.09006 * 109.59695 * 186.82606 * 10 9 5 38 38 H 0.97000 * 120.00531 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.59803 * 65.41068 * 23 11 10 40 40 H 1.08995 * 109.59927 * 185.88406 * 23 11 10 41 41 H 1.09003 * 109.46884 * 57.03426 * 24 5 4 42 42 H 1.08997 * 109.46884 * 297.03381 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2947 2.1627 1.2131 5 6 3.1574 3.3475 0.7461 6 6 2.7687 3.4778 -0.7378 7 6 2.2709 2.0969 -1.1104 8 8 2.1217 1.6950 -2.2449 9 6 2.7913 4.6124 1.5093 10 6 3.6136 5.7897 0.9722 11 7 5.0368 5.4266 1.0103 12 16 6.1324 6.3932 1.7898 13 8 7.3986 6.1150 1.2076 14 8 5.5636 7.6948 1.8276 15 6 6.2205 5.8398 3.4603 16 1 5.6138 5.0079 3.7863 17 6 7.0639 6.4690 4.3513 18 7 7.1293 6.0563 5.5983 19 14 8.1127 7.9084 3.7876 20 1 7.3629 9.1748 3.9862 21 1 9.3678 7.9466 4.5804 22 1 8.4410 7.7479 2.3483 23 6 5.4708 4.1903 0.3450 24 6 4.6377 3.0225 0.8860 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8430 1.5579 1.9352 31 1 1.3636 2.5229 1.6505 32 1 1.9762 4.2158 -0.8617 33 1 3.6382 3.7451 -1.3383 34 1 3.0060 4.4725 2.5687 35 1 1.7295 4.8212 1.3783 36 1 3.3182 6.0035 -0.0549 37 1 3.4437 6.6684 1.5944 38 1 7.7224 6.4990 6.2253 39 1 5.3183 4.2810 -0.7305 40 1 6.5260 4.0140 0.5534 41 1 4.8665 2.1198 0.3195 42 1 4.8766 2.8621 1.9373 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:23 Heat of formation + Delta-G solvation = -114.864675 kcal Electronic energy + Delta-G solvation = -25955.632361 eV Core-core repulsion = 22255.228160 eV Total energy + Delta-G solvation = -3700.404202 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07483 -38.20334 -36.11657 -35.74765 -34.47015 -33.90677 -33.04798 -31.03175 -30.65522 -28.42037 -26.57984 -26.40046 -23.43329 -23.27596 -22.56111 -19.73548 -19.34359 -18.25210 -17.59575 -16.88680 -16.58167 -16.17627 -15.47951 -15.30806 -15.21020 -14.40138 -14.24836 -14.06634 -13.86278 -13.74511 -13.53205 -13.43188 -13.13197 -12.89102 -12.78876 -12.61527 -12.21682 -11.99885 -11.79446 -11.53411 -11.40789 -11.37077 -11.08014 -10.96285 -10.86772 -10.72219 -10.56887 -10.37842 -10.26488 -9.81412 -9.73850 -9.23747 -9.14753 -8.85914 -8.30965 -6.83556 -5.36931 1.96747 2.54315 2.87548 3.04906 3.15123 3.24644 3.92629 4.10241 4.24541 4.28512 4.55363 4.57563 4.74595 4.87571 4.94814 5.08033 5.12504 5.25919 5.30143 5.37041 5.41578 5.46214 5.46463 5.54306 5.57255 5.62400 5.70028 5.82744 5.86121 5.90031 5.92918 6.02345 6.08510 6.23655 6.26967 6.39458 6.47626 6.62966 7.00087 7.31912 7.45441 8.11357 8.18122 8.68003 10.28659 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003872 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.499497 B = 7229.561539 C = 7599.880078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.111 3.889 5 C -0.063 4.063 6 C -0.150 4.150 7 C 0.519 3.481 8 O -0.540 6.540 9 C -0.120 4.120 10 C 0.126 3.874 11 N -1.000 6.000 12 S 2.675 3.325 13 O -1.007 7.007 14 O -1.009 7.009 15 C -1.014 5.014 16 H 0.121 0.879 17 C 0.154 3.846 18 N -0.824 5.824 19 Si 0.799 3.201 20 H -0.247 1.247 21 H -0.255 1.255 22 H -0.220 1.220 23 C 0.126 3.874 24 C -0.122 4.122 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.280 0.720 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -9.126 -6.649 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.354 5.354 4 C -0.012 4.012 5 C -0.063 4.063 6 C -0.190 4.190 7 C 0.308 3.692 8 O -0.417 6.417 9 C -0.159 4.159 10 C 0.000 4.000 11 N -0.836 5.836 12 S 2.778 3.222 13 O -0.997 6.997 14 O -0.999 6.999 15 C -1.148 5.148 16 H 0.139 0.861 17 C -0.066 4.066 18 N -0.453 5.453 19 Si 0.619 3.381 20 H -0.170 1.170 21 H -0.179 1.179 22 H -0.142 1.142 23 C 0.000 4.000 24 C -0.161 4.161 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.750 -8.711 -7.498 15.738 hybrid contribution 0.218 0.050 0.742 0.775 sum -10.532 -8.660 -6.756 15.218 Atomic orbital electron populations 1.22155 0.95919 1.02202 1.02434 1.21319 0.94274 0.81446 1.03043 1.48419 1.65868 1.13617 1.07534 1.22228 0.99417 0.92494 0.87085 1.20891 0.96032 0.95166 0.94256 1.22531 1.03749 0.95312 0.97359 1.21073 0.76206 0.87770 0.84161 1.90699 1.54100 1.75617 1.21268 1.21840 0.99646 0.93475 1.00982 1.21277 0.80223 0.97188 1.01287 1.57705 1.18710 1.36768 1.70398 1.01474 0.71753 0.72649 0.76362 1.93457 1.40702 1.85279 1.80238 1.93397 1.78556 1.38981 1.88987 1.30535 1.36651 1.30497 1.17136 0.86080 1.24422 0.93218 0.94893 0.94041 1.69981 1.33733 1.38167 1.03402 0.87902 0.82197 0.84037 0.83952 1.17036 1.17923 1.14179 1.21296 0.99389 0.83138 0.96163 1.21838 0.92678 0.98335 1.03229 0.91563 0.92379 0.92331 0.90203 0.90373 0.90007 0.90843 0.87654 0.87511 0.89978 0.90749 0.92016 0.88628 0.90933 0.92029 0.88625 0.91185 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 37.16 0.38 -0.93 16 2 C 0.12 1.06 6.65 -4.05 -0.03 1.03 16 3 N -0.62 -6.48 2.94 -172.61 -0.51 -6.98 16 4 C 0.11 1.01 6.46 -3.38 -0.02 0.99 16 5 C -0.06 -0.68 0.60 -154.41 -0.09 -0.77 16 6 C -0.15 -1.64 4.94 -27.03 -0.13 -1.77 16 7 C 0.52 6.68 8.03 -10.75 -0.09 6.60 16 8 O -0.54 -8.92 17.60 5.56 0.10 -8.82 16 9 C -0.12 -1.37 4.67 -26.98 -0.13 -1.50 16 10 C 0.13 1.83 6.11 -3.65 -0.02 1.81 16 11 N -1.00 -17.82 3.28 -113.37 -0.37 -18.19 16 12 S 2.67 63.80 4.19 -107.50 -0.45 63.35 16 13 O -1.01 -25.99 14.72 -57.17 -0.84 -26.83 16 14 O -1.01 -25.78 15.53 -57.17 -0.89 -26.67 16 15 C -1.01 -26.92 10.29 30.60 0.31 -26.61 16 16 H 0.12 3.21 8.06 -52.49 -0.42 2.78 16 17 C 0.15 4.28 5.47 -17.82 -0.10 4.18 16 18 N -0.82 -23.09 13.96 55.43 0.77 -22.32 16 19 Si 0.80 20.13 26.54 -169.99 -4.51 15.62 16 20 H -0.25 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.22 -5.65 5.61 56.52 0.32 -5.33 16 23 C 0.13 1.91 6.10 -3.64 -0.02 1.88 16 24 C -0.12 -1.51 4.80 -26.98 -0.13 -1.64 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 31 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 32 H 0.11 1.02 7.81 -51.93 -0.41 0.61 16 33 H 0.11 1.21 6.14 -51.93 -0.32 0.89 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 37 H 0.10 1.50 7.11 -51.93 -0.37 1.13 16 38 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 40 H 0.10 1.57 7.11 -51.93 -0.37 1.20 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -33.68 340.34 -8.08 -41.76 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.45 Total: 0.68 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -0.06 Total: -16.73 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.11 Total: -47.49 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -1.63 Total: -62.32 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.51 Total: 15.62 kcal Atomic # 16 Polarization: 63.80 SS G_CDS: -0.45 Total: 63.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.68 -8.08 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.109 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds