Wall clock time and date at job start Fri Apr 10 2020 18:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47281 * 2 1 4 4 C 1.46929 * 124.34957 * 90.00280 * 3 2 1 5 5 C 1.53816 * 105.34271 * 163.61796 * 4 3 2 6 6 C 1.53947 * 102.48562 * 24.68690 * 5 4 3 7 7 C 1.34504 * 124.35470 * 270.02481 * 3 2 1 8 8 O 1.21281 * 124.94429 * 0.35516 * 7 3 2 9 9 C 1.52199 * 110.67041 * 142.66874 * 5 4 3 10 10 C 1.53316 * 109.47854 * 182.95929 * 9 5 4 11 11 N 1.46925 * 108.70681 * 306.59251 * 10 9 5 12 12 S 1.65600 * 120.58540 * 234.37090 * 11 10 9 13 13 O 1.42108 * 106.40204 * 203.53814 * 12 11 10 14 14 O 1.42095 * 106.40305 * 336.45693 * 12 11 10 15 15 C 1.76204 * 107.21730 * 89.99952 * 12 11 10 16 16 H 1.07999 * 120.00128 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99559 * 179.97438 * 15 12 11 18 18 N 1.31511 * 119.99703 * 179.97438 * 17 15 12 19 19 Si 1.86803 * 120.00349 * 0.02562 * 17 15 12 20 20 H 1.48504 * 109.46832 * 90.00044 * 19 17 15 21 21 H 1.48497 * 109.46937 * 209.99928 * 19 17 15 22 22 H 1.48501 * 109.46856 * 329.99993 * 19 17 15 23 23 C 1.46944 * 118.83122 * 54.34647 * 11 10 9 24 24 C 1.52198 * 110.67455 * 266.70526 * 5 4 3 25 25 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47333 * 300.00298 * 1 2 3 27 27 H 1.09009 * 109.47108 * 59.99559 * 1 2 3 28 28 H 1.09001 * 109.46891 * 239.99982 * 2 1 3 29 29 H 1.09000 * 109.46867 * 120.00530 * 2 1 3 30 30 H 1.08993 * 110.27043 * 44.64835 * 4 3 2 31 31 H 1.09000 * 110.26624 * 282.58324 * 4 3 2 32 32 H 1.08996 * 110.51625 * 94.54957 * 6 5 4 33 33 H 1.09000 * 110.50507 * 217.26131 * 6 5 4 34 34 H 1.08996 * 109.46858 * 62.95270 * 9 5 4 35 35 H 1.09000 * 109.46817 * 302.95939 * 9 5 4 36 36 H 1.08997 * 109.59906 * 66.36105 * 10 9 5 37 37 H 1.09006 * 109.59695 * 186.82606 * 10 9 5 38 38 H 0.97000 * 120.00531 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.59803 * 65.41068 * 23 11 10 40 40 H 1.08995 * 109.59927 * 185.88406 * 23 11 10 41 41 H 1.09003 * 109.46884 * 57.03426 * 24 5 4 42 42 H 1.08997 * 109.46884 * 297.03381 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2947 2.1627 1.2131 5 6 3.1574 3.3475 0.7461 6 6 2.7687 3.4778 -0.7378 7 6 2.2709 2.0969 -1.1104 8 8 2.1217 1.6950 -2.2449 9 6 2.7913 4.6124 1.5093 10 6 3.6136 5.7897 0.9722 11 7 5.0368 5.4266 1.0103 12 16 6.1324 6.3932 1.7898 13 8 7.3986 6.1150 1.2076 14 8 5.5636 7.6948 1.8276 15 6 6.2205 5.8398 3.4603 16 1 5.6138 5.0079 3.7863 17 6 7.0639 6.4690 4.3513 18 7 7.1293 6.0563 5.5983 19 14 8.1127 7.9084 3.7876 20 1 7.3629 9.1748 3.9862 21 1 9.3678 7.9466 4.5804 22 1 8.4410 7.7479 2.3483 23 6 5.4708 4.1903 0.3450 24 6 4.6377 3.0225 0.8860 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8430 1.5579 1.9352 31 1 1.3636 2.5229 1.6505 32 1 1.9762 4.2158 -0.8617 33 1 3.6382 3.7451 -1.3383 34 1 3.0060 4.4725 2.5687 35 1 1.7295 4.8212 1.3783 36 1 3.3182 6.0035 -0.0549 37 1 3.4437 6.6684 1.5944 38 1 7.7224 6.4990 6.2253 39 1 5.3183 4.2810 -0.7305 40 1 6.5260 4.0140 0.5534 41 1 4.8665 2.1198 0.3195 42 1 4.8766 2.8621 1.9373 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192973738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:22 Heat of formation + Delta-G solvation = -139.730633 kcal Electronic energy + Delta-G solvation = -25956.710630 eV Core-core repulsion = 22255.228160 eV Total energy + Delta-G solvation = -3701.482471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.99056 -39.28339 -37.71003 -37.12830 -36.44735 -35.17157 -34.84202 -32.11157 -31.57165 -29.27191 -28.49190 -27.51435 -24.42347 -24.14061 -23.65086 -21.07962 -20.41436 -19.77380 -19.17916 -18.61674 -17.54783 -17.24020 -16.97188 -16.79225 -16.32240 -15.68600 -15.44265 -15.28142 -15.16212 -14.89146 -14.85561 -14.65417 -14.49973 -14.37351 -13.79387 -13.57254 -13.38949 -13.34344 -13.02684 -12.85470 -12.79434 -12.66706 -12.55446 -12.43810 -12.12333 -12.07723 -11.86992 -11.85901 -11.41456 -11.35449 -11.30373 -11.06493 -10.72851 -9.75637 -9.64585 -8.93658 -7.46907 0.15352 1.05909 1.14514 1.22481 1.59521 1.90372 2.09191 2.45195 2.49797 3.35757 3.40096 3.47441 3.66100 3.83143 4.04934 4.05800 4.13824 4.28536 4.31093 4.42752 4.47346 4.49490 4.57813 4.67887 4.71429 4.72066 4.75778 4.86507 4.88839 4.95949 4.97889 5.06053 5.19254 5.25858 5.29238 5.34195 5.43207 5.47167 5.67029 5.94648 6.07966 6.14834 6.58640 7.19369 8.23509 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003872 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.499497 B = 7229.561539 C = 7599.880078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 N -0.615 5.615 4 C 0.113 3.887 5 C -0.057 4.057 6 C -0.145 4.145 7 C 0.512 3.488 8 O -0.585 6.585 9 C -0.114 4.114 10 C 0.113 3.887 11 N -0.995 5.995 12 S 2.691 3.309 13 O -1.030 7.030 14 O -1.029 7.029 15 C -1.030 5.030 16 H 0.111 0.889 17 C 0.112 3.888 18 N -0.853 5.853 19 Si 0.817 3.183 20 H -0.240 1.240 21 H -0.223 1.223 22 H -0.231 1.231 23 C 0.117 3.883 24 C -0.117 4.117 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.289 0.711 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -9.665 -6.778 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.347 5.347 4 C -0.009 4.009 5 C -0.058 4.058 6 C -0.184 4.184 7 C 0.302 3.698 8 O -0.466 6.466 9 C -0.153 4.153 10 C -0.012 4.012 11 N -0.834 5.834 12 S 2.793 3.207 13 O -1.021 7.021 14 O -1.019 7.019 15 C -1.163 5.163 16 H 0.129 0.871 17 C -0.105 4.105 18 N -0.484 5.484 19 Si 0.635 3.365 20 H -0.164 1.164 21 H -0.146 1.146 22 H -0.153 1.153 23 C -0.008 4.008 24 C -0.156 4.156 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.118 -9.255 -7.559 17.019 hybrid contribution 0.578 0.136 0.753 0.958 sum -11.540 -9.120 -6.806 16.207 Atomic orbital electron populations 1.22094 0.95033 1.03145 1.01744 1.21504 0.94994 0.80641 1.03554 1.48541 1.64728 1.14135 1.07332 1.22303 1.00217 0.91785 0.86560 1.20790 0.95019 0.95693 0.94301 1.22531 1.04175 0.94757 0.96987 1.21381 0.75921 0.88564 0.83947 1.90676 1.56290 1.76593 1.23059 1.21814 1.01050 0.92284 1.00115 1.21649 0.78400 0.98146 1.02995 1.57313 1.19464 1.37094 1.69536 1.00729 0.71968 0.72674 0.75328 1.93417 1.42838 1.85743 1.80052 1.93361 1.78960 1.40466 1.89085 1.31051 1.35974 1.30034 1.19205 0.87096 1.25080 0.94309 0.96641 0.94435 1.70003 1.34888 1.39383 1.04086 0.87604 0.82867 0.82473 0.83560 1.16386 1.14557 1.15320 1.21556 0.98988 0.82880 0.97415 1.21786 0.93588 0.97575 1.02612 0.89915 0.91484 0.94438 0.91598 0.87966 0.88882 0.88650 0.85785 0.87847 0.91059 0.87214 0.89211 0.90121 0.90018 0.89681 0.90530 0.89806 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 10.24 71.98 0.74 -1.41 16 2 C 0.11 1.73 6.65 86.38 0.57 2.31 16 3 N -0.61 -11.22 2.94 -818.57 -2.41 -13.62 16 4 C 0.11 1.68 6.46 86.57 0.56 2.24 16 5 C -0.06 -1.06 0.60 -52.12 -0.03 -1.10 16 6 C -0.14 -2.76 4.94 30.40 0.15 -2.61 16 7 C 0.51 12.21 8.03 87.93 0.71 12.91 16 8 O -0.59 -18.97 17.60 -3.03 -0.05 -19.03 16 9 C -0.11 -2.25 4.67 30.44 0.14 -2.11 16 10 C 0.11 3.03 6.11 86.40 0.53 3.56 16 11 N -0.99 -34.44 3.28 -512.58 -1.68 -36.12 16 12 S 2.69 128.42 4.19 -56.49 -0.24 128.19 16 13 O -1.03 -53.48 14.72 -128.00 -1.88 -55.36 16 14 O -1.03 -52.42 15.53 -128.00 -1.99 -54.41 16 15 C -1.03 -55.36 10.29 67.73 0.70 -54.67 16 16 H 0.11 5.99 8.06 -2.91 -0.02 5.97 16 17 C 0.11 6.26 5.47 84.66 0.46 6.72 16 18 N -0.85 -48.06 13.96 21.45 0.30 -47.76 16 19 Si 0.82 40.41 26.54 68.60 1.82 42.23 16 20 H -0.24 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.22 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.23 -11.79 5.61 99.48 0.56 -11.23 16 23 C 0.12 3.39 6.10 86.40 0.53 3.91 16 24 C -0.12 -2.67 4.80 30.43 0.15 -2.53 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 1.20 7.93 -2.39 -0.02 1.18 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.24 7.88 -2.39 -0.02 1.22 16 31 H 0.10 1.09 7.84 -2.39 -0.02 1.07 16 32 H 0.12 1.92 7.81 -2.39 -0.02 1.90 16 33 H 0.10 2.07 6.14 -2.39 -0.01 2.05 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.09 1.93 7.60 -2.39 -0.02 1.91 16 37 H 0.08 2.43 7.11 -2.38 -0.02 2.42 16 38 H 0.29 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.09 2.08 6.55 -2.39 -0.02 2.07 16 40 H 0.08 2.52 7.11 -2.39 -0.02 2.50 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -73.70 340.34 -0.06 -73.77 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.86 Total: 14.87 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 5.20 Total: -32.76 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -3.79 Total: -97.50 kcal Atomic # 8 Polarization: -124.87 SS G_CDS: -3.93 Total: -128.80 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.82 Total: 42.23 kcal Atomic # 16 Polarization: 128.42 SS G_CDS: -0.24 Total: 128.19 kcal Total: -73.70 -0.06 -73.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.963 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds