Wall clock time and date at job start Fri Apr 10 2020 18:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.46512 * 124.58579 * 2 1 4 4 C 1.54076 * 105.47718 * 198.34107 * 3 2 1 5 5 C 1.55803 * 102.34921 * 335.45900 * 4 3 2 6 6 C 1.47810 * 108.66779 * 144.15101 * 5 4 3 7 7 C 1.50677 * 112.57818 * 204.80043 * 6 5 4 8 8 C 1.45274 * 117.43472 * 281.01265 * 7 6 5 9 9 N 1.50946 * 106.65025 * 62.44581 * 8 7 6 10 10 S 1.65224 * 120.76913 * 101.34431 * 9 8 7 11 11 O 1.42098 * 106.40378 * 203.53955 * 10 9 8 12 12 O 1.42098 * 106.40378 * 336.46263 * 10 9 8 13 13 C 1.76202 * 107.21726 * 89.99836 * 10 9 8 14 14 H 1.07999 * 120.00176 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99880 * 179.97438 * 13 10 9 16 16 N 1.31519 * 120.00156 * 180.02562 * 15 13 10 17 17 Si 1.86805 * 120.00192 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.46799 * 89.99920 * 17 15 13 19 19 H 1.48499 * 109.47201 * 209.99800 * 17 15 13 20 20 H 1.48501 * 109.47071 * 329.99732 * 17 15 13 21 21 C 1.42976 * 117.59068 * 280.50576 * 9 8 7 22 22 C 1.53832 * 118.70199 * 84.75281 * 21 9 8 23 23 C 1.34681 * 124.19950 * 180.02562 * 2 1 3 24 24 O 1.21303 * 122.78360 * 355.35546 * 23 2 1 25 25 H 1.09009 * 109.47125 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47263 * 299.96986 * 1 2 3 27 27 H 1.09004 * 109.47485 * 59.96923 * 1 2 3 28 28 H 1.09156 * 110.17229 * 317.43227 * 3 2 1 29 29 H 1.09055 * 110.33663 * 78.95850 * 3 2 1 30 30 H 1.08928 * 111.37138 * 217.88938 * 4 3 2 31 31 H 1.08856 * 111.46003 * 93.16053 * 4 3 2 32 32 H 1.10547 * 109.54092 * 82.63125 * 6 5 4 33 33 H 1.10555 * 109.56573 * 326.90820 * 6 5 4 34 34 H 1.10870 * 107.35386 * 161.24637 * 7 6 5 35 35 H 1.08909 * 110.76817 * 47.69514 * 7 6 5 36 36 H 1.08867 * 110.59573 * 303.60220 * 8 7 6 37 37 H 1.08870 * 110.61582 * 181.24038 * 8 7 6 38 38 H 0.97003 * 119.99831 * 179.97438 * 16 15 13 39 39 H 1.09634 * 107.57278 * 207.75350 * 21 9 8 40 40 H 1.09668 * 107.54858 * 321.87524 * 21 9 8 41 41 H 1.09664 * 109.14511 * 212.44864 * 22 21 9 42 42 H 1.09696 * 109.14778 * 95.30806 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2965 1.2062 0.0000 4 6 3.6903 0.7446 -0.4673 5 6 3.6868 -0.7657 -0.0845 6 6 4.4288 -1.5174 -1.1185 7 6 4.0074 -2.9619 -1.1976 8 6 4.5402 -3.8704 -0.1970 9 7 4.0356 -3.3850 1.1403 10 16 2.7611 -4.1288 1.8835 11 8 2.1950 -3.1691 2.7653 12 8 2.0195 -4.7746 0.8577 13 6 3.4234 -5.4077 2.8987 14 1 4.4907 -5.5689 2.9367 15 6 2.5793 -6.2019 3.6454 16 7 3.0736 -7.1561 4.4036 17 14 0.7334 -5.9227 3.5803 18 1 0.1459 -6.7484 2.4948 19 1 0.1280 -6.3100 4.8798 20 1 0.4589 -4.4876 3.3145 21 6 4.7112 -2.2771 1.7405 22 6 4.3012 -0.8520 1.3313 23 6 2.2219 -1.1139 -0.0005 24 8 1.7504 -2.2285 0.0816 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5134 0.8902 27 1 -0.3634 0.5143 -0.8897 28 1 1.8890 1.9444 -0.6931 29 1 2.3505 1.6294 1.0036 30 1 4.4818 1.2647 0.0709 31 1 3.8074 0.8584 -1.5435 32 1 5.5132 -1.4590 -0.9114 33 1 4.2827 -1.0358 -2.1028 34 1 4.3390 -3.3497 -2.1820 35 1 2.9219 -3.0467 -1.2222 36 1 5.6286 -3.8496 -0.2016 37 1 4.1830 -4.8841 -0.3706 38 1 2.4797 -7.7146 4.9292 39 1 4.5932 -2.3665 2.8268 40 1 5.7825 -2.3934 1.5369 41 1 5.1810 -0.1987 1.3731 42 1 3.5710 -0.4663 2.0534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275494651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:00 Heat of formation + Delta-G solvation = -92.254469 kcal Electronic energy + Delta-G solvation = -27564.177953 eV Core-core repulsion = 23864.754203 eV Total energy + Delta-G solvation = -3699.423750 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01649 -37.32856 -36.30057 -35.30580 -33.96808 -33.77043 -32.85946 -32.45314 -29.78391 -26.85794 -26.48347 -26.18407 -25.20155 -22.35891 -21.11686 -20.84028 -18.59923 -18.31417 -17.01494 -16.56562 -16.45905 -16.02160 -15.30292 -15.16576 -15.10728 -14.32801 -14.11522 -13.75358 -13.64528 -13.32373 -13.12161 -12.87301 -12.72979 -12.63841 -12.49703 -12.25567 -12.12400 -12.03584 -11.66581 -11.57589 -11.34163 -11.19607 -10.73888 -10.55739 -10.41244 -10.29671 -10.24688 -10.12718 -9.91144 -9.50937 -9.07834 -9.06364 -8.80699 -8.51620 -8.04806 -6.66901 -5.17274 2.36191 2.89970 3.16270 3.17482 3.29563 3.41867 4.09693 4.21573 4.34957 4.46042 4.62834 4.74141 4.91432 5.00250 5.21178 5.31362 5.34887 5.38122 5.42433 5.47023 5.49979 5.62745 5.65962 5.82182 5.83258 5.84582 5.88488 5.97294 5.99141 6.10040 6.25557 6.32443 6.36791 6.47763 6.49708 6.70197 6.88289 6.96391 7.33508 7.63118 7.71626 8.35712 8.51777 8.86911 10.45967 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.006411 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.971303 B = 4366.336533 C = 4965.633273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.633 5.633 3 C 0.105 3.895 4 C -0.134 4.134 5 C -0.072 4.072 6 C -0.081 4.081 7 C -0.156 4.156 8 C 0.143 3.857 9 N -0.992 5.992 10 S 2.704 3.296 11 O -1.011 7.011 12 O -0.997 6.997 13 C -1.032 5.032 14 H 0.116 0.884 15 C 0.153 3.847 16 N -0.830 5.830 17 Si 0.799 3.201 18 H -0.247 1.247 19 H -0.258 1.258 20 H -0.217 1.217 21 C 0.136 3.864 22 C -0.117 4.117 23 C 0.524 3.476 24 O -0.497 6.497 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.278 0.722 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 17.664 -10.721 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.369 5.369 3 C -0.019 4.019 4 C -0.172 4.172 5 C -0.076 4.076 6 C -0.119 4.119 7 C -0.194 4.194 8 C 0.019 3.981 9 N -0.826 5.826 10 S 2.805 3.195 11 O -1.001 7.001 12 O -0.987 6.987 13 C -1.164 5.164 14 H 0.134 0.866 15 C -0.065 4.065 16 N -0.460 5.460 17 Si 0.619 3.381 18 H -0.171 1.171 19 H -0.182 1.182 20 H -0.139 1.139 21 C 0.007 3.993 22 C -0.157 4.157 23 C 0.311 3.689 24 O -0.371 6.371 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.170 17.149 -10.664 20.310 hybrid contribution -0.254 -0.233 0.499 0.607 sum 1.915 16.916 -10.164 19.828 Atomic orbital electron populations 1.21494 0.78333 1.04092 1.00680 1.48197 1.06293 1.07289 1.75104 1.21874 0.90763 0.87792 1.01437 1.23199 0.96756 0.95043 1.02173 1.20571 0.93425 0.95641 0.97962 1.20183 0.99833 0.95364 0.96491 1.20458 1.05842 0.94271 0.98820 1.20512 0.98092 0.98092 0.81395 1.57781 1.53111 1.41147 1.30562 1.00753 0.71565 0.74002 0.73182 1.93384 1.76143 1.63953 1.66642 1.93349 1.69335 1.76572 1.59481 1.31025 1.06412 1.35454 1.43540 0.86567 1.24430 0.99111 0.91979 0.90997 1.70015 1.36954 1.16217 1.22832 0.87900 0.85199 0.84398 0.80581 1.17066 1.18181 1.13924 1.20229 0.96048 0.85425 0.97643 1.22733 1.00814 0.98767 0.93423 1.20779 0.88639 0.84313 0.75120 1.90728 1.75525 1.23241 1.47560 0.89610 0.92426 0.92617 0.90905 0.91390 0.89101 0.90031 0.91125 0.91909 0.92928 0.88403 0.91699 0.89290 0.91177 0.91047 0.92434 0.90340 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 11.13 59.84 0.67 1.90 16 2 N -0.63 -9.05 3.33 -180.78 -0.60 -9.65 16 3 C 0.10 1.02 7.29 -3.47 -0.03 0.99 16 4 C -0.13 -1.19 6.07 -24.67 -0.15 -1.34 16 5 C -0.07 -0.98 0.48 -155.79 -0.08 -1.05 16 6 C -0.08 -1.00 4.40 -30.41 -0.13 -1.13 16 7 C -0.16 -2.46 4.43 -31.53 -0.14 -2.60 16 8 C 0.14 2.53 5.93 -5.17 -0.03 2.50 16 9 N -0.99 -21.06 1.97 -116.42 -0.23 -21.29 16 10 S 2.70 74.82 2.37 -107.50 -0.25 74.56 16 11 O -1.01 -29.57 14.78 -60.97 -0.90 -30.47 16 12 O -1.00 -29.48 14.72 -64.88 -0.95 -30.43 16 13 C -1.03 -31.29 10.28 30.60 0.31 -30.98 16 14 H 0.12 3.54 8.06 -52.49 -0.42 3.11 16 15 C 0.15 4.74 5.47 -17.82 -0.10 4.64 16 16 N -0.83 -25.47 13.96 55.43 0.77 -24.70 16 17 Si 0.80 22.32 26.54 -169.99 -4.51 17.81 16 18 H -0.25 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.22 -6.27 5.61 56.52 0.32 -5.96 16 21 C 0.14 2.36 5.17 -5.47 -0.03 2.34 16 22 C -0.12 -1.65 4.75 -25.47 -0.12 -1.77 16 23 C 0.52 9.29 6.13 -10.97 -0.07 9.22 16 24 O -0.50 -11.36 10.07 -17.49 -0.18 -11.53 16 25 H 0.09 1.33 7.43 -51.92 -0.39 0.94 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.53 8.15 -51.84 -0.42 0.11 16 29 H 0.07 0.62 8.15 -51.90 -0.42 0.19 16 30 H 0.09 0.61 7.33 -51.97 -0.38 0.23 16 31 H 0.08 0.61 7.29 -52.01 -0.38 0.23 16 32 H 0.07 0.73 8.15 -51.04 -0.42 0.31 16 33 H 0.06 0.64 7.41 -51.04 -0.38 0.26 16 34 H 0.05 0.69 8.25 -50.85 -0.42 0.27 16 35 H 0.10 1.92 5.24 -51.98 -0.27 1.65 16 36 H 0.06 0.92 7.92 -52.00 -0.41 0.51 16 37 H 0.09 1.71 7.52 -52.00 -0.39 1.32 16 38 H 0.28 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.07 1.36 7.67 -51.57 -0.40 0.96 16 40 H 0.06 0.81 7.90 -51.55 -0.41 0.40 16 41 H 0.08 0.78 7.55 -51.55 -0.39 0.39 16 42 H 0.07 1.06 7.97 -51.53 -0.41 0.65 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -39.00 325.67 -8.21 -47.21 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.37 Total: 0.86 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 0.11 Total: -17.28 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.06 Total: -55.63 kcal Atomic # 8 Polarization: -70.40 SS G_CDS: -2.03 Total: -72.43 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.51 Total: 17.81 kcal Atomic # 16 Polarization: 74.82 SS G_CDS: -0.25 Total: 74.56 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -39.00 -8.21 -47.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275494651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.045 kcal (2) G-P(sol) polarization free energy of solvation -39.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds