Wall clock time and date at job start Fri Apr 10 2020 18:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81399 * 103.00374 * 2 1 4 4 H 1.09000 * 109.46960 * 55.00232 * 3 2 1 5 5 C 1.53006 * 109.47007 * 295.00491 * 3 2 1 6 6 C 1.52997 * 109.47412 * 175.00332 * 3 2 1 7 7 N 1.46496 * 109.46742 * 300.00351 * 6 3 2 8 8 C 1.34782 * 119.99618 * 179.97438 * 7 6 3 9 9 O 1.21348 * 120.00313 * 0.02562 * 8 7 6 10 10 C 1.49456 * 119.99693 * 179.97438 * 8 7 6 11 11 O 1.21343 * 120.00119 * 0.02562 * 10 8 7 12 12 N 1.34782 * 119.99693 * 179.97438 * 10 8 7 13 13 C 1.47019 * 125.64629 * 359.69713 * 12 10 8 14 14 C 1.54340 * 107.26418 * 178.84754 * 13 12 10 15 15 C 1.55166 * 103.01850 * 338.13847 * 14 13 12 16 16 O 1.42892 * 111.00655 * 277.23275 * 15 14 13 17 17 C 1.50704 * 111.03299 * 153.39390 * 15 14 13 18 18 H 1.07996 * 120.00280 * 6.33602 * 17 15 14 19 19 C 1.37876 * 119.99423 * 186.33240 * 17 15 14 20 20 N 1.31507 * 120.00241 * 0.02562 * 19 17 15 21 21 Si 1.86808 * 119.99559 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46496 * 90.00298 * 21 19 17 23 23 H 1.48499 * 109.47077 * 210.00173 * 21 19 17 24 24 H 1.48501 * 109.46995 * 330.00303 * 21 19 17 25 25 C 1.47423 * 125.64682 * 180.02562 * 12 10 8 26 26 H 1.09003 * 109.47144 * 299.99756 * 1 2 3 27 27 H 1.09001 * 109.47470 * 59.99718 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.47050 * 299.99686 * 5 3 2 31 31 H 1.09001 * 109.46801 * 59.99798 * 5 3 2 32 32 H 1.09000 * 109.47140 * 60.00011 * 6 3 2 33 33 H 1.09001 * 109.47375 * 180.02562 * 6 3 2 34 34 H 0.96997 * 120.00653 * 359.97438 * 7 6 3 35 35 H 1.08995 * 109.88829 * 298.38833 * 13 12 10 36 36 H 1.09001 * 109.88343 * 59.56063 * 13 12 10 37 37 H 1.09000 * 110.85104 * 219.67691 * 14 13 12 38 38 H 1.09002 * 110.51507 * 96.45036 * 14 13 12 39 39 H 0.96698 * 114.00132 * 173.65429 * 16 15 14 40 40 H 0.97008 * 120.00143 * 180.02562 * 20 19 17 41 41 H 1.09005 * 110.36768 * 322.92945 * 25 12 10 42 42 H 1.08996 * 110.36758 * 85.14582 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 6 3.7370 1.9411 0.1256 7 7 4.1959 1.3339 1.3774 8 6 5.5037 1.3657 1.7020 9 8 6.3009 1.8976 0.9577 10 6 5.9718 0.7467 2.9792 11 8 5.1745 0.2151 3.7238 12 7 7.2796 0.7780 3.3036 13 6 8.3490 1.3798 2.4939 14 6 9.6690 1.2028 3.2739 15 6 9.1874 1.0056 4.7357 16 8 8.9285 2.2628 5.3637 17 6 10.1854 0.2034 5.5304 18 1 11.1368 -0.0607 5.0931 19 6 9.8836 -0.1932 6.8160 20 7 8.7249 0.1280 7.3484 21 14 11.1204 -1.1882 7.8009 22 1 12.0057 -0.2674 8.5582 23 1 10.3995 -2.0741 8.7500 24 1 11.9391 -2.0141 6.8773 25 6 7.8755 0.2085 4.5259 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9876 3.4637 -1.3072 30 1 2.2353 1.9150 -2.1492 31 1 0.6635 2.2779 -1.3968 32 1 4.2296 1.4545 -0.7162 33 1 3.9822 3.0032 0.1261 34 1 3.5587 0.9090 1.9725 35 1 8.4146 0.8734 1.5309 36 1 8.1484 2.4407 2.3443 37 1 10.2917 2.0934 3.1899 38 1 10.2052 0.3213 2.9223 39 1 8.5339 2.1892 6.2434 40 1 8.5127 -0.1507 8.2530 41 1 7.2066 0.3489 5.3750 42 1 8.0913 -0.8505 4.3848 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332246647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:36 Heat of formation + Delta-G solvation = -118.576394 kcal Electronic energy + Delta-G solvation = -24659.174308 eV Core-core repulsion = 20958.609154 eV Total energy + Delta-G solvation = -3700.565154 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30679 -38.51964 -37.14088 -36.15444 -34.26744 -32.89290 -32.23766 -30.19116 -29.28758 -27.92789 -27.14471 -25.52705 -23.56837 -22.43418 -21.57643 -19.75876 -19.39337 -17.43330 -17.11137 -16.92247 -16.58921 -15.84017 -15.62638 -15.20254 -15.06933 -14.59437 -14.36306 -14.23565 -13.93232 -13.73112 -13.17760 -13.10557 -13.02109 -12.87291 -12.79976 -12.57414 -12.24915 -11.89511 -11.64947 -11.60836 -11.48127 -11.07452 -11.03618 -10.77551 -10.55391 -10.46077 -10.20687 -10.19091 -9.36254 -9.22592 -9.11437 -8.69151 -8.38779 -8.02462 -7.87123 -6.28444 -4.37880 1.25866 1.83663 2.18241 2.65727 3.21557 3.29043 3.31660 3.64763 3.90920 4.17026 4.26958 4.45122 4.71023 4.75963 4.78120 4.80814 4.99344 5.13832 5.15764 5.34217 5.35398 5.49432 5.51873 5.65892 5.81961 5.85707 6.08590 6.18590 6.36005 6.54214 6.75156 6.83061 6.87434 7.18780 7.26756 7.34007 7.73497 7.90006 8.02573 8.08622 8.48948 8.66346 9.29421 9.37912 10.78740 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.002795 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.480400 B =10014.107409 C =10619.378576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.243 6.243 3 C -0.076 4.076 4 H 0.096 0.904 5 C -0.145 4.145 6 C 0.140 3.860 7 N -0.706 5.706 8 C 0.511 3.489 9 O -0.518 6.518 10 C 0.508 3.492 11 O -0.536 6.536 12 N -0.575 5.575 13 C 0.111 3.889 14 C -0.122 4.122 15 C 0.248 3.752 16 O -0.581 6.581 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.092 3.908 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.416 0.584 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.091 0.909 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 2.963 -14.718 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.018 6.018 3 C -0.205 4.205 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.015 3.985 7 N -0.362 5.362 8 C 0.293 3.707 9 O -0.393 6.393 10 C 0.290 3.710 11 O -0.415 6.415 12 N -0.307 5.307 13 C -0.011 4.011 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.389 6.389 17 C -0.574 4.574 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.029 4.029 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.254 0.746 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.230 0.770 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.670 2.395 -15.270 20.635 hybrid contribution -0.937 0.007 1.375 1.664 sum -14.607 2.402 -13.895 20.303 Atomic orbital electron populations 1.23433 0.94437 1.06638 1.04909 1.87307 1.07015 1.09711 1.97753 1.23477 0.99066 0.95286 1.02625 0.88536 1.22016 1.01566 1.01324 0.95495 1.21190 0.90481 0.99542 0.87263 1.45782 1.08528 1.58745 1.23106 1.20426 0.82721 0.80323 0.87266 1.90723 1.53617 1.43263 1.51728 1.19523 0.82655 0.82256 0.86562 1.90728 1.53074 1.45705 1.51946 1.48655 1.05051 1.53544 1.23422 1.22143 0.87044 0.98363 0.93570 1.22716 0.95155 1.02141 0.95934 1.19645 0.89373 0.81813 0.88393 1.86128 1.85359 1.31415 1.36041 1.21461 1.02511 1.34512 0.98955 0.91386 1.25089 0.95441 0.95151 0.97592 1.69710 1.21338 1.46129 1.16029 0.86389 0.80914 0.79812 0.79717 1.20387 1.21025 1.19676 1.23487 0.97327 0.97752 0.84297 0.90379 0.90448 0.87980 0.91104 0.90822 0.91930 0.90100 0.89523 0.74617 0.91762 0.91206 0.90534 0.90373 0.76968 0.91982 0.89103 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 10.45 101.05 1.06 0.28 16 2 S -0.24 -2.31 20.99 -107.50 -2.26 -4.56 16 3 C -0.08 -0.59 2.93 -26.73 -0.08 -0.67 16 4 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 5 C -0.14 -0.83 9.10 37.16 0.34 -0.49 16 6 C 0.14 1.44 5.12 -4.05 -0.02 1.42 16 7 N -0.71 -9.61 5.26 -60.73 -0.32 -9.93 16 8 C 0.51 8.87 7.86 -11.58 -0.09 8.78 16 9 O -0.52 -9.53 14.12 5.50 0.08 -9.45 16 10 C 0.51 10.47 7.91 -11.58 -0.09 10.37 16 11 O -0.54 -12.01 16.73 5.50 0.09 -11.91 16 12 N -0.57 -12.40 3.33 -171.01 -0.57 -12.97 16 13 C 0.11 2.19 5.49 -3.06 -0.02 2.17 16 14 C -0.12 -2.50 6.13 -24.88 -0.15 -2.66 16 15 C 0.25 6.04 0.87 -89.60 -0.08 5.96 16 16 O -0.58 -14.83 13.16 -35.23 -0.46 -15.30 16 17 C -0.54 -13.88 8.27 -34.44 -0.28 -14.17 16 18 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 19 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 20 N -0.89 -23.59 10.69 55.43 0.59 -23.00 16 21 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 25 C 0.09 2.21 5.38 -2.52 -0.01 2.20 16 26 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 27 H 0.08 0.38 7.14 -51.92 -0.37 0.01 16 28 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.30 6.92 -51.93 -0.36 -0.06 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.42 5.58 7.44 -40.82 -0.30 5.27 16 35 H 0.06 1.17 7.71 -51.93 -0.40 0.77 16 36 H 0.07 1.38 7.57 -51.93 -0.39 0.99 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 39 H 0.38 9.88 7.56 45.56 0.34 10.22 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.09 2.41 7.33 -51.93 -0.38 2.03 16 42 H 0.07 1.66 8.03 -51.93 -0.42 1.24 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -29.62 358.92 -7.61 -37.23 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.62 Total: 14.32 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 0.47 Total: 14.94 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.30 Total: -45.90 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.29 Total: -36.67 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.26 Total: -4.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.62 -7.61 -37.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332246647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.347 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds