Wall clock time and date at job start Fri Apr 10 2020 18:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81399 * 103.00374 * 2 1 4 4 H 1.09000 * 109.46960 * 55.00232 * 3 2 1 5 5 C 1.53006 * 109.47007 * 295.00491 * 3 2 1 6 6 C 1.52997 * 109.47412 * 175.00332 * 3 2 1 7 7 N 1.46496 * 109.46742 * 300.00351 * 6 3 2 8 8 C 1.34782 * 119.99618 * 179.97438 * 7 6 3 9 9 O 1.21348 * 120.00313 * 0.02562 * 8 7 6 10 10 C 1.49456 * 119.99693 * 179.97438 * 8 7 6 11 11 O 1.21343 * 120.00119 * 0.02562 * 10 8 7 12 12 N 1.34782 * 119.99693 * 179.97438 * 10 8 7 13 13 C 1.47019 * 125.64629 * 359.69713 * 12 10 8 14 14 C 1.54340 * 107.26418 * 178.84754 * 13 12 10 15 15 C 1.55166 * 103.01850 * 338.13847 * 14 13 12 16 16 O 1.42892 * 111.00655 * 277.23275 * 15 14 13 17 17 C 1.50704 * 111.03299 * 153.39390 * 15 14 13 18 18 H 1.07996 * 120.00280 * 6.33602 * 17 15 14 19 19 C 1.37876 * 119.99423 * 186.33240 * 17 15 14 20 20 N 1.31507 * 120.00241 * 0.02562 * 19 17 15 21 21 Si 1.86808 * 119.99559 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46496 * 90.00298 * 21 19 17 23 23 H 1.48499 * 109.47077 * 210.00173 * 21 19 17 24 24 H 1.48501 * 109.46995 * 330.00303 * 21 19 17 25 25 C 1.47423 * 125.64682 * 180.02562 * 12 10 8 26 26 H 1.09003 * 109.47144 * 299.99756 * 1 2 3 27 27 H 1.09001 * 109.47470 * 59.99718 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.47050 * 299.99686 * 5 3 2 31 31 H 1.09001 * 109.46801 * 59.99798 * 5 3 2 32 32 H 1.09000 * 109.47140 * 60.00011 * 6 3 2 33 33 H 1.09001 * 109.47375 * 180.02562 * 6 3 2 34 34 H 0.96997 * 120.00653 * 359.97438 * 7 6 3 35 35 H 1.08995 * 109.88829 * 298.38833 * 13 12 10 36 36 H 1.09001 * 109.88343 * 59.56063 * 13 12 10 37 37 H 1.09000 * 110.85104 * 219.67691 * 14 13 12 38 38 H 1.09002 * 110.51507 * 96.45036 * 14 13 12 39 39 H 0.96698 * 114.00132 * 173.65429 * 16 15 14 40 40 H 0.97008 * 120.00143 * 180.02562 * 20 19 17 41 41 H 1.09005 * 110.36768 * 322.92945 * 25 12 10 42 42 H 1.08996 * 110.36758 * 85.14582 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 6 3.7370 1.9411 0.1256 7 7 4.1959 1.3339 1.3774 8 6 5.5037 1.3657 1.7020 9 8 6.3009 1.8976 0.9577 10 6 5.9718 0.7467 2.9792 11 8 5.1745 0.2151 3.7238 12 7 7.2796 0.7780 3.3036 13 6 8.3490 1.3798 2.4939 14 6 9.6690 1.2028 3.2739 15 6 9.1874 1.0056 4.7357 16 8 8.9285 2.2628 5.3637 17 6 10.1854 0.2034 5.5304 18 1 11.1368 -0.0607 5.0931 19 6 9.8836 -0.1932 6.8160 20 7 8.7249 0.1280 7.3484 21 14 11.1204 -1.1882 7.8009 22 1 12.0057 -0.2674 8.5582 23 1 10.3995 -2.0741 8.7500 24 1 11.9391 -2.0141 6.8773 25 6 7.8755 0.2085 4.5259 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9876 3.4637 -1.3072 30 1 2.2353 1.9150 -2.1492 31 1 0.6635 2.2779 -1.3968 32 1 4.2296 1.4545 -0.7162 33 1 3.9822 3.0032 0.1261 34 1 3.5587 0.9090 1.9725 35 1 8.4146 0.8734 1.5309 36 1 8.1484 2.4407 2.3443 37 1 10.2917 2.0934 3.1899 38 1 10.2052 0.3213 2.9223 39 1 8.5339 2.1892 6.2434 40 1 8.5127 -0.1507 8.2530 41 1 7.2066 0.3489 5.3750 42 1 8.0913 -0.8505 4.3848 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332246647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:35 Heat of formation + Delta-G solvation = -140.501799 kcal Electronic energy + Delta-G solvation = -24660.125065 eV Core-core repulsion = 20958.609154 eV Total energy + Delta-G solvation = -3701.515911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.81335 -40.07627 -38.88032 -37.19391 -36.04265 -34.23954 -33.81984 -31.94707 -29.85765 -29.68396 -28.27101 -27.14510 -25.09634 -23.42751 -22.87958 -21.55245 -20.85677 -19.16443 -18.79237 -18.01854 -17.76586 -17.17470 -17.07599 -16.94931 -16.33363 -16.18056 -15.65236 -15.47807 -14.89041 -14.70392 -14.66104 -14.48418 -14.43364 -13.95969 -13.74661 -13.61596 -13.51798 -13.30517 -13.24966 -12.84126 -12.68234 -12.53487 -12.49892 -12.35724 -12.22514 -12.21819 -12.10571 -11.21527 -10.85629 -10.75651 -10.58133 -10.36635 -10.30440 -9.64384 -8.74179 -8.24778 -6.41569 0.33063 0.63709 1.26611 1.44500 1.46273 1.55683 1.60296 2.11262 2.37715 2.51148 3.01219 3.30367 3.46157 3.77440 3.86144 4.06057 4.11553 4.15098 4.32706 4.33846 4.35891 4.46502 4.58121 4.66210 4.72290 4.73756 4.86347 4.95203 4.97768 5.06047 5.06696 5.15729 5.25000 5.33441 5.43882 5.74739 5.94824 6.06623 6.36217 6.59697 6.67805 6.90709 7.26967 7.35153 8.80863 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.002795 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.480400 B =10014.107409 C =10619.378576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.313 6.313 3 C -0.058 4.058 4 H 0.106 0.894 5 C -0.140 4.140 6 C 0.136 3.864 7 N -0.689 5.689 8 C 0.518 3.482 9 O -0.529 6.529 10 C 0.501 3.499 11 O -0.561 6.561 12 N -0.583 5.583 13 C 0.119 3.881 14 C -0.115 4.115 15 C 0.233 3.767 16 O -0.587 6.587 17 C -0.555 4.555 18 H 0.070 0.930 19 C 0.027 3.973 20 N -0.914 5.914 21 Si 0.965 3.035 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.106 3.894 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.418 0.582 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.058 0.942 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 3.473 -16.224 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.088 6.088 3 C -0.187 4.187 4 H 0.124 0.876 5 C -0.199 4.199 6 C 0.013 3.987 7 N -0.343 5.343 8 C 0.298 3.702 9 O -0.406 6.406 10 C 0.284 3.716 11 O -0.441 6.441 12 N -0.315 5.315 13 C -0.003 4.003 14 C -0.153 4.153 15 C 0.193 3.807 16 O -0.394 6.394 17 C -0.593 4.593 18 H 0.088 0.912 19 C -0.174 4.174 20 N -0.553 5.553 21 Si 0.791 3.209 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.016 4.016 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.256 0.744 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.223 0.777 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.317 2.918 -16.818 22.279 hybrid contribution -0.848 -0.151 1.828 2.021 sum -15.165 2.767 -14.990 21.502 Atomic orbital electron populations 1.23455 0.90864 1.07336 1.06120 1.87542 1.11117 1.12209 1.97935 1.23430 0.97115 0.93785 1.04343 0.87588 1.22006 1.02312 1.01761 0.93852 1.21462 0.92251 0.99794 0.85204 1.45805 1.07021 1.57490 1.23967 1.19749 0.83949 0.80597 0.85899 1.90716 1.54131 1.44142 1.51577 1.20238 0.82064 0.81686 0.87615 1.90703 1.53611 1.46652 1.53118 1.48702 1.06009 1.53818 1.22934 1.22169 0.85831 0.98513 0.93774 1.22728 0.95907 1.03292 0.93367 1.19863 0.89329 0.81315 0.90182 1.86120 1.85312 1.32310 1.35704 1.21752 1.02958 1.34978 0.99599 0.91185 1.25817 0.96955 0.96040 0.98557 1.69821 1.22598 1.46751 1.16159 0.85440 0.78802 0.78423 0.78276 1.20122 1.21067 1.19003 1.23069 0.96883 0.97213 0.84474 0.89608 0.88730 0.87581 0.89747 0.91162 0.90578 0.90414 0.88260 0.74444 0.89800 0.91098 0.89530 0.88987 0.77718 0.92054 0.92302 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.45 113.37 1.18 0.06 16 2 S -0.31 -5.58 20.99 -56.49 -1.19 -6.76 16 3 C -0.06 -0.79 2.93 30.60 0.09 -0.70 16 4 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 5 C -0.14 -1.21 9.10 71.98 0.66 -0.55 16 6 C 0.14 2.56 5.12 86.38 0.44 3.00 16 7 N -0.69 -18.04 5.26 -464.41 -2.44 -20.48 16 8 C 0.52 17.57 7.86 87.27 0.69 18.26 16 9 O -0.53 -18.72 14.12 -3.24 -0.05 -18.76 16 10 C 0.50 20.75 7.91 87.27 0.69 21.44 16 11 O -0.56 -25.65 16.73 -3.23 -0.05 -25.71 16 12 N -0.58 -25.28 3.33 -813.30 -2.70 -27.98 16 13 C 0.12 4.55 5.49 86.74 0.48 5.03 16 14 C -0.12 -4.63 6.13 31.79 0.19 -4.44 16 15 C 0.23 11.43 0.87 -10.14 -0.01 11.43 16 16 O -0.59 -30.40 13.16 -148.98 -1.96 -32.36 16 17 C -0.55 -28.79 8.27 25.60 0.21 -28.58 16 18 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 19 C 0.03 1.42 5.29 84.66 0.45 1.87 16 20 N -0.91 -49.23 10.69 21.45 0.23 -49.00 16 21 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 C 0.11 5.21 5.38 86.86 0.47 5.68 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 0.65 7.14 -2.39 -0.02 0.63 16 28 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.48 6.92 -2.39 -0.02 0.47 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.42 10.93 7.44 -92.71 -0.69 10.24 16 35 H 0.08 2.89 7.71 -2.39 -0.02 2.87 16 36 H 0.07 2.71 7.57 -2.39 -0.02 2.69 16 37 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 39 H 0.37 20.04 7.56 -74.06 -0.56 19.48 16 40 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 41 H 0.06 3.25 7.33 -2.38 -0.02 3.24 16 42 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 Total: -1.00 -63.92 358.92 -0.80 -64.72 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: -0.20 Total: 40.30 kcal Atomic # 6 Polarization: 26.96 SS G_CDS: 5.54 Total: 32.50 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -4.92 Total: -97.47 kcal Atomic # 8 Polarization: -74.77 SS G_CDS: -2.06 Total: -76.83 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -1.19 Total: -6.76 kcal Total: -63.92 -0.80 -64.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332246647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.779 kcal (2) G-P(sol) polarization free energy of solvation -63.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds