Wall clock time and date at job start Fri Apr 10 2020 18:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21280 * 120.00325 * 2 1 4 4 N 1.34781 * 119.99728 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00096 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.46807 * 324.99814 * 5 4 2 7 7 C 1.53001 * 109.47263 * 84.99311 * 5 4 2 8 8 C 1.52992 * 109.47159 * 204.99301 * 5 4 2 9 9 H 1.09008 * 109.55410 * 54.87382 * 8 5 4 10 10 C 1.53297 * 109.51315 * 174.99514 * 8 5 4 11 11 N 1.47150 * 108.41463 * 172.20715 * 10 8 5 12 12 C 1.34783 * 120.98195 * 129.46998 * 11 10 8 13 13 O 1.21277 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.99989 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.46990 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00009 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00215 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99662 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00323 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99482 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47492 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47277 * 119.99708 * 20 18 16 23 23 H 1.48506 * 109.46779 * 239.99242 * 20 18 16 24 24 C 1.47168 * 118.03241 * 309.53266 * 11 10 8 25 25 C 1.53293 * 108.40979 * 50.46649 * 24 11 10 26 26 O 1.42959 * 109.51549 * 294.74490 * 8 5 4 27 27 H 1.09001 * 109.46926 * 269.99918 * 1 2 3 28 28 H 1.09004 * 109.47116 * 29.98826 * 1 2 3 29 29 H 1.08989 * 109.47713 * 149.99569 * 1 2 3 30 30 H 0.96999 * 120.00086 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.46936 * 299.99962 * 7 5 4 32 32 H 1.08992 * 109.47207 * 59.99958 * 7 5 4 33 33 H 1.09002 * 109.47022 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.68431 * 291.95330 * 10 8 5 35 35 H 1.08999 * 109.67914 * 52.46916 * 10 8 5 36 36 H 1.09004 * 109.47229 * 299.99184 * 14 12 11 37 37 H 1.08994 * 109.47573 * 59.99986 * 14 12 11 38 38 H 0.97000 * 120.00510 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.64585 * 290.75020 * 24 11 10 40 40 H 1.08999 * 109.71687 * 170.22818 * 24 11 10 41 41 H 1.09003 * 109.51469 * 187.79924 * 25 24 11 42 42 H 1.09003 * 109.51340 * 67.64899 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1674 -0.0011 6 1 4.0089 -0.3254 -0.5905 7 6 4.1564 -1.0418 1.4357 8 6 4.1555 -2.4746 -0.6110 9 1 3.7195 -2.6097 -1.6009 10 6 5.6832 -2.4241 -0.7271 11 7 6.1625 -3.7536 -1.1370 12 6 7.0074 -3.8962 -2.1774 13 8 7.3834 -2.9202 -2.7913 14 6 7.4838 -5.2684 -2.5786 15 16 8.5977 -5.1291 -3.9984 16 6 8.9909 -6.8287 -4.2467 17 1 8.5642 -7.5816 -3.6008 18 6 9.8501 -7.1996 -5.2718 19 7 10.3707 -6.2819 -6.0587 20 14 10.2665 -9.0014 -5.5354 21 1 9.5568 -9.8265 -4.5250 22 1 9.8425 -9.4133 -6.8976 23 1 11.7317 -9.1969 -5.3928 24 6 5.6908 -4.9231 -0.3782 25 6 4.1628 -4.8518 -0.2792 26 8 3.7832 -3.5703 0.2284 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8898 -0.5138 30 1 1.6958 -2.0073 -0.0005 31 1 3.7933 -0.1105 1.8703 32 1 3.7933 -1.8836 2.0252 33 1 5.2465 -1.0414 1.4352 34 1 5.9704 -1.6839 -1.4740 35 1 6.1161 -2.1592 0.2376 36 1 8.0141 -5.7273 -1.7440 37 1 6.6272 -5.8860 -2.8485 38 1 10.9709 -6.5411 -6.7754 39 1 6.1245 -4.9104 0.6217 40 1 5.9830 -5.8380 -0.8935 41 1 3.8048 -5.6306 0.3942 42 1 3.7267 -4.9955 -1.2678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487343392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:29 Heat of formation + Delta-G solvation = -116.143700 kcal Electronic energy + Delta-G solvation = -24329.978131 eV Core-core repulsion = 20629.518466 eV Total energy + Delta-G solvation = -3700.459665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65712 -39.72493 -38.33045 -35.82386 -34.66460 -32.75653 -32.47789 -30.63618 -29.54599 -29.02476 -27.22896 -25.56700 -24.78556 -23.24161 -21.06005 -20.70485 -19.37838 -17.86684 -17.30142 -17.16961 -16.79514 -16.31597 -15.73006 -15.58991 -15.43235 -15.06998 -14.85248 -14.83737 -14.11098 -13.85655 -13.70393 -13.51187 -13.32660 -13.08973 -12.82155 -12.59469 -12.46666 -12.31159 -12.10406 -11.83844 -11.66586 -11.25062 -11.11030 -11.06765 -10.98533 -10.79767 -10.37450 -10.17209 -9.85263 -9.51691 -9.38478 -9.12182 -8.58633 -8.28687 -6.56287 -6.26469 -3.97802 2.35553 2.64474 2.89350 2.98489 3.18060 3.20792 3.27097 3.30185 3.49373 4.14919 4.35745 4.42471 4.57128 4.64391 4.67804 4.84104 4.86992 4.90103 5.00606 5.07829 5.08837 5.09715 5.18410 5.32987 5.37867 5.42444 5.50075 5.55038 5.61572 5.68462 5.76694 5.79652 6.01687 6.04977 6.16642 6.39102 6.74742 7.21552 7.37971 7.54894 7.93575 8.30256 8.41748 9.18856 10.80986 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.002482 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.736452 B =11276.937230 C =11562.638208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.722 5.722 5 C 0.153 3.847 6 H 0.103 0.897 7 C -0.160 4.160 8 C 0.071 3.929 9 H 0.071 0.929 10 C 0.087 3.913 11 N -0.624 5.624 12 C 0.536 3.464 13 O -0.512 6.512 14 C -0.150 4.150 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.279 1.279 24 C 0.073 3.927 25 C 0.049 3.951 26 O -0.374 6.374 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.405 0.595 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.441 4.610 15.950 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.425 6.425 4 N -0.375 5.375 5 C 0.048 3.952 6 H 0.121 0.879 7 C -0.219 4.219 8 C 0.012 3.988 9 H 0.089 0.911 10 C -0.037 4.037 11 N -0.361 5.361 12 C 0.324 3.676 13 O -0.385 6.385 14 C -0.301 4.301 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.050 4.050 25 C -0.028 4.028 26 O -0.293 6.293 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.240 0.760 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.403 6.885 15.034 24.741 hybrid contribution -0.237 -2.934 0.330 2.962 sum -18.640 3.951 15.364 24.477 Atomic orbital electron populations 1.21879 0.91659 1.04917 1.04747 1.20841 0.90650 0.83469 0.75341 1.90737 1.70769 1.31399 1.49592 1.46101 1.06912 1.09010 1.75437 1.20926 0.80235 0.95880 0.98164 0.87921 1.22133 1.01516 1.02554 0.95654 1.22746 0.94797 0.86966 0.94319 0.91092 1.22179 0.92738 0.86479 1.02297 1.48137 1.48351 1.06783 1.32836 1.20396 0.77316 0.91504 0.78343 1.90706 1.55273 1.40633 1.51924 1.23545 1.04709 0.95677 1.06139 1.85454 1.54746 1.11496 1.31651 1.22883 1.33680 0.92141 1.19659 0.90869 1.25003 0.95001 0.98751 0.94855 1.70020 1.29652 1.33043 1.17463 0.86107 0.78321 0.82773 0.78230 1.19616 1.20538 1.20531 1.22418 0.95115 0.89909 0.97604 1.23006 0.93928 0.85575 1.00339 1.87908 1.79895 1.14036 1.47474 0.88873 0.88870 0.90175 0.76035 0.92156 0.91339 0.91317 0.87815 0.90320 0.89141 0.89257 0.92171 0.90516 0.88205 0.87411 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.30 36.00 0.37 -0.51 16 2 C 0.51 4.73 7.90 -10.98 -0.09 4.64 16 3 O -0.55 -7.57 16.76 5.56 0.09 -7.48 16 4 N -0.72 -5.72 5.06 -53.81 -0.27 -5.99 16 5 C 0.15 1.41 2.45 -67.93 -0.17 1.25 16 6 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 7 C -0.16 -1.42 9.05 37.16 0.34 -1.08 16 8 C 0.07 0.68 2.61 -26.58 -0.07 0.61 16 9 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 10 C 0.09 1.02 5.82 -3.53 -0.02 1.00 16 11 N -0.62 -8.45 3.02 -172.27 -0.52 -8.97 16 12 C 0.54 9.89 7.73 -10.98 -0.08 9.80 16 13 O -0.51 -11.46 15.33 5.56 0.09 -11.38 16 14 C -0.15 -2.94 4.53 36.00 0.16 -2.78 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 20 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 C 0.07 0.72 6.54 -3.53 -0.02 0.70 16 25 C 0.05 0.39 6.99 37.31 0.26 0.65 16 26 O -0.37 -3.28 9.24 -35.23 -0.33 -3.60 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.25 8.14 -51.94 -0.42 -0.18 16 30 H 0.40 2.37 8.39 -40.82 -0.34 2.03 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.59 7.55 -51.93 -0.39 0.20 16 33 H 0.07 0.58 6.42 -51.93 -0.33 0.25 16 34 H 0.10 1.40 7.08 -51.93 -0.37 1.03 16 35 H 0.08 0.84 6.27 -51.93 -0.33 0.52 16 36 H 0.09 1.64 8.02 -51.91 -0.42 1.22 16 37 H 0.09 1.59 7.66 -51.92 -0.40 1.19 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.97 6.06 -51.93 -0.31 0.65 16 41 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -36.21 359.29 -7.36 -43.56 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.21 Total: -0.23 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 0.88 Total: 1.59 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.06 Total: -40.08 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.15 Total: -22.46 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.21 -7.36 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487343392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.579 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds