Wall clock time and date at job start Fri Apr 10 2020 18:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00521 * 2 1 4 4 N 1.34784 * 119.99774 * 180.27106 * 2 1 3 5 5 C 1.46499 * 119.99893 * 179.72962 * 4 2 1 6 6 H 1.09002 * 109.47048 * 324.99733 * 5 4 2 7 7 C 1.52995 * 109.47258 * 85.00288 * 5 4 2 8 8 C 1.53004 * 109.46824 * 204.99873 * 5 4 2 9 9 H 1.09001 * 109.51177 * 179.97438 * 8 5 4 10 10 C 1.53302 * 109.51193 * 59.89899 * 8 5 4 11 11 N 1.47166 * 108.37417 * 187.82531 * 10 8 5 12 12 C 1.34783 * 120.94155 * 230.47098 * 11 10 8 13 13 O 1.21281 * 119.99783 * 359.97438 * 12 11 10 14 14 C 1.50695 * 120.00241 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47368 * 180.02562 * 14 12 11 16 16 C 1.76197 * 99.99952 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00205 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99776 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99655 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99792 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47169 * 90.00196 * 20 18 16 22 22 H 1.48497 * 109.47167 * 209.99528 * 20 18 16 23 23 H 1.48503 * 109.47559 * 330.00234 * 20 18 16 24 24 C 1.47152 * 118.07932 * 50.45345 * 11 10 8 25 25 C 1.53295 * 108.37956 * 309.49826 * 24 11 10 26 26 O 1.42958 * 109.51278 * 300.10434 * 8 5 4 27 27 H 1.09000 * 109.47347 * 269.72909 * 1 2 3 28 28 H 1.09003 * 109.46583 * 29.72664 * 1 2 3 29 29 H 1.08996 * 109.47395 * 149.72482 * 1 2 3 30 30 H 0.97005 * 119.99846 * 359.72750 * 4 2 1 31 31 H 1.09007 * 109.47281 * 179.97438 * 7 5 4 32 32 H 1.09003 * 109.47025 * 299.99449 * 7 5 4 33 33 H 1.09002 * 109.47544 * 59.99749 * 7 5 4 34 34 H 1.09002 * 109.68091 * 307.49501 * 10 8 5 35 35 H 1.08993 * 109.68134 * 68.04829 * 10 8 5 36 36 H 1.09002 * 109.47259 * 300.00480 * 14 12 11 37 37 H 1.09001 * 109.47121 * 59.99815 * 14 12 11 38 38 H 0.97005 * 119.99244 * 180.02562 * 19 18 16 39 39 H 1.08991 * 109.68365 * 189.77366 * 24 11 10 40 40 H 1.09000 * 109.68149 * 69.22055 * 24 11 10 41 41 H 1.08994 * 109.51549 * 292.37337 * 25 24 11 42 42 H 1.09009 * 109.55114 * 172.25218 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0055 5 6 3.6458 -1.1673 -0.0115 6 1 4.0068 -0.3241 -0.6005 7 6 4.1617 -1.0451 1.4236 8 6 4.1532 -2.4733 -0.6263 9 1 5.2432 -2.4738 -0.6315 10 6 3.6348 -2.5980 -2.0636 11 7 3.9757 -3.9389 -2.5650 12 6 4.5939 -4.0985 -3.7520 13 8 4.8769 -3.1289 -4.4235 14 6 4.9337 -5.4814 -4.2448 15 16 5.7522 -5.3641 -5.8548 16 6 6.0274 -7.0732 -6.1834 17 1 5.7084 -7.8185 -5.4698 18 6 6.6551 -7.4616 -7.3589 19 7 7.0452 -6.5531 -8.2278 20 14 6.9475 -9.2734 -7.7069 21 1 5.7813 -9.8316 -8.4375 22 1 8.1703 -9.4273 -8.5353 23 1 7.1231 -10.0018 -6.4248 24 6 3.6224 -5.1000 -1.7329 25 6 4.1424 -4.8528 -0.3122 26 8 3.6783 -3.5799 0.1441 27 1 -0.3634 -0.0049 1.0276 28 1 -0.3632 0.8925 -0.5096 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6958 -2.0073 -0.0055 31 1 5.2518 -1.0455 1.4192 32 1 3.8002 -0.1147 1.8617 33 1 3.8008 -1.8883 2.0126 34 1 2.5528 -2.4662 -2.0763 35 1 4.1048 -1.8403 -2.6904 36 1 5.6011 -5.9671 -3.5328 37 1 4.0195 -6.0668 -4.3433 38 1 7.4836 -6.8246 -9.0495 39 1 4.0841 -5.9987 -2.1417 40 1 2.5392 -5.2204 -1.7116 41 1 5.2323 -4.8627 -0.3166 42 1 3.7739 -5.6343 0.3523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487343395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:40 Heat of formation + Delta-G solvation = -116.710527 kcal Electronic energy + Delta-G solvation = -24498.113482 eV Core-core repulsion = 20797.629238 eV Total energy + Delta-G solvation = -3700.484244 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68826 -39.66539 -38.32083 -35.80927 -34.68814 -32.48143 -32.42219 -30.85781 -29.56988 -29.08828 -27.46331 -25.54829 -24.39098 -23.00547 -21.57171 -20.59380 -19.33881 -17.87051 -17.30042 -17.26926 -16.80964 -16.21170 -15.70985 -15.50455 -15.31466 -15.06575 -14.85259 -14.81395 -14.06481 -13.91227 -13.74079 -13.46121 -13.42870 -13.02602 -12.82884 -12.64496 -12.33225 -12.23022 -12.08167 -11.98727 -11.75065 -11.30812 -11.10769 -11.07217 -10.98946 -10.80312 -10.40753 -10.11382 -9.86555 -9.49697 -9.39406 -9.11602 -8.57974 -8.29549 -6.56692 -6.26612 -3.98070 2.39436 2.71551 2.90562 2.91873 3.18586 3.19940 3.26240 3.32162 3.48299 4.14770 4.25760 4.46404 4.58443 4.63785 4.78693 4.82573 4.86537 4.92471 5.04025 5.08002 5.08669 5.10507 5.19938 5.32802 5.36760 5.44713 5.52111 5.53294 5.60739 5.69296 5.71949 5.77537 5.98981 6.00936 6.18377 6.38010 6.74641 7.25486 7.36936 7.54272 7.97354 8.29762 8.41137 9.18582 10.80803 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.002629 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.484875 B =10648.446763 C =11043.516514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.721 5.721 5 C 0.154 3.846 6 H 0.103 0.897 7 C -0.158 4.158 8 C 0.070 3.930 9 H 0.080 0.920 10 C 0.087 3.913 11 N -0.625 5.625 12 C 0.536 3.464 13 O -0.512 6.512 14 C -0.151 4.151 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.073 3.927 25 C 0.049 3.951 26 O -0.375 6.375 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.406 0.594 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 5.252 21.026 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.426 6.426 4 N -0.374 5.374 5 C 0.049 3.951 6 H 0.121 0.879 7 C -0.217 4.217 8 C 0.011 3.989 9 H 0.098 0.902 10 C -0.036 4.036 11 N -0.362 5.362 12 C 0.324 3.676 13 O -0.385 6.385 14 C -0.301 4.301 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.051 4.051 25 C -0.028 4.028 26 O -0.294 6.294 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.241 0.759 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.772 7.507 19.976 23.905 hybrid contribution -0.235 -2.934 0.323 2.961 sum -11.007 4.573 20.299 23.540 Atomic orbital electron populations 1.21882 0.91703 1.04992 1.04683 1.20835 0.90645 0.83471 0.75291 1.90731 1.70773 1.31422 1.49668 1.46118 1.06900 1.09047 1.75340 1.20979 0.80441 0.95841 0.97867 0.87902 1.22078 1.01281 1.02615 0.95680 1.22830 0.99068 0.86569 0.90414 0.90242 1.22173 1.00967 0.86154 0.94345 1.48167 1.61334 1.06442 1.20275 1.20400 0.76025 0.91570 0.79599 1.90709 1.51590 1.41472 1.54768 1.23549 1.04813 0.95531 1.06212 1.85452 1.74122 1.10912 1.12810 1.22842 1.45536 0.91767 1.08298 0.90926 1.25002 0.94724 0.98821 0.95037 1.70017 1.37431 1.33287 1.09453 0.86158 0.77979 0.82868 0.78430 1.20239 1.20716 1.19689 1.22422 1.01359 0.89915 0.91360 1.23009 0.99350 0.85714 0.94739 1.87884 1.73132 1.14051 1.54309 0.88925 0.88862 0.90137 0.75874 0.91632 0.92017 0.91461 0.90961 0.87947 0.89242 0.89177 0.92117 0.88194 0.90614 0.92272 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.30 36.00 0.37 -0.60 16 2 C 0.51 4.85 7.90 -10.98 -0.09 4.76 16 3 O -0.55 -7.63 16.76 5.56 0.09 -7.54 16 4 N -0.72 -5.81 4.24 -53.81 -0.23 -6.04 16 5 C 0.15 1.40 2.42 -67.93 -0.16 1.23 16 6 H 0.10 1.09 7.58 -51.93 -0.39 0.69 16 7 C -0.16 -1.34 9.34 37.15 0.35 -0.99 16 8 C 0.07 0.66 2.53 -26.57 -0.07 0.60 16 9 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 10 C 0.09 1.01 5.86 -3.52 -0.02 0.99 16 11 N -0.62 -8.34 3.02 -172.27 -0.52 -8.86 16 12 C 0.54 9.84 7.73 -10.98 -0.08 9.76 16 13 O -0.51 -11.47 15.33 5.56 0.09 -11.39 16 14 C -0.15 -2.94 4.53 36.00 0.16 -2.77 16 15 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 16 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 17 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 20 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.07 0.70 6.54 -3.53 -0.02 0.67 16 25 C 0.05 0.39 6.98 37.31 0.26 0.65 16 26 O -0.38 -3.24 9.22 -35.23 -0.32 -3.56 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.41 2.59 8.01 -40.82 -0.33 2.26 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.55 7.69 -51.93 -0.40 0.16 16 34 H 0.07 0.76 7.27 -51.93 -0.38 0.38 16 35 H 0.10 1.42 7.08 -51.93 -0.37 1.05 16 36 H 0.09 1.59 7.66 -51.91 -0.40 1.19 16 37 H 0.09 1.62 8.02 -51.92 -0.42 1.20 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.10 0.95 6.05 -51.93 -0.31 0.64 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.59 8.14 -51.92 -0.42 0.16 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -35.99 361.12 -7.40 -43.40 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.34 Total: -0.14 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 0.89 Total: 1.61 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.01 Total: -40.01 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.15 Total: -22.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.99 -7.40 -43.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487343395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.315 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds