Wall clock time and date at job start Fri Apr 10 2020 18:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00521 * 2 1 4 4 N 1.34784 * 119.99774 * 180.27106 * 2 1 3 5 5 C 1.46499 * 119.99893 * 179.72962 * 4 2 1 6 6 H 1.09002 * 109.47048 * 324.99733 * 5 4 2 7 7 C 1.52995 * 109.47258 * 85.00288 * 5 4 2 8 8 C 1.53004 * 109.46824 * 204.99873 * 5 4 2 9 9 H 1.09001 * 109.51177 * 179.97438 * 8 5 4 10 10 C 1.53302 * 109.51193 * 59.89899 * 8 5 4 11 11 N 1.47166 * 108.37417 * 187.82531 * 10 8 5 12 12 C 1.34783 * 120.94155 * 230.47098 * 11 10 8 13 13 O 1.21281 * 119.99783 * 359.97438 * 12 11 10 14 14 C 1.50695 * 120.00241 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47368 * 180.02562 * 14 12 11 16 16 C 1.76197 * 99.99952 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00205 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99776 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99655 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99792 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47169 * 90.00196 * 20 18 16 22 22 H 1.48497 * 109.47167 * 209.99528 * 20 18 16 23 23 H 1.48503 * 109.47559 * 330.00234 * 20 18 16 24 24 C 1.47152 * 118.07932 * 50.45345 * 11 10 8 25 25 C 1.53295 * 108.37956 * 309.49826 * 24 11 10 26 26 O 1.42958 * 109.51278 * 300.10434 * 8 5 4 27 27 H 1.09000 * 109.47347 * 269.72909 * 1 2 3 28 28 H 1.09003 * 109.46583 * 29.72664 * 1 2 3 29 29 H 1.08996 * 109.47395 * 149.72482 * 1 2 3 30 30 H 0.97005 * 119.99846 * 359.72750 * 4 2 1 31 31 H 1.09007 * 109.47281 * 179.97438 * 7 5 4 32 32 H 1.09003 * 109.47025 * 299.99449 * 7 5 4 33 33 H 1.09002 * 109.47544 * 59.99749 * 7 5 4 34 34 H 1.09002 * 109.68091 * 307.49501 * 10 8 5 35 35 H 1.08993 * 109.68134 * 68.04829 * 10 8 5 36 36 H 1.09002 * 109.47259 * 300.00480 * 14 12 11 37 37 H 1.09001 * 109.47121 * 59.99815 * 14 12 11 38 38 H 0.97005 * 119.99244 * 180.02562 * 19 18 16 39 39 H 1.08991 * 109.68365 * 189.77366 * 24 11 10 40 40 H 1.09000 * 109.68149 * 69.22055 * 24 11 10 41 41 H 1.08994 * 109.51549 * 292.37337 * 25 24 11 42 42 H 1.09009 * 109.55114 * 172.25218 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0055 5 6 3.6458 -1.1673 -0.0115 6 1 4.0068 -0.3241 -0.6005 7 6 4.1617 -1.0451 1.4236 8 6 4.1532 -2.4733 -0.6263 9 1 5.2432 -2.4738 -0.6315 10 6 3.6348 -2.5980 -2.0636 11 7 3.9757 -3.9389 -2.5650 12 6 4.5939 -4.0985 -3.7520 13 8 4.8769 -3.1289 -4.4235 14 6 4.9337 -5.4814 -4.2448 15 16 5.7522 -5.3641 -5.8548 16 6 6.0274 -7.0732 -6.1834 17 1 5.7084 -7.8185 -5.4698 18 6 6.6551 -7.4616 -7.3589 19 7 7.0452 -6.5531 -8.2278 20 14 6.9475 -9.2734 -7.7069 21 1 5.7813 -9.8316 -8.4375 22 1 8.1703 -9.4273 -8.5353 23 1 7.1231 -10.0018 -6.4248 24 6 3.6224 -5.1000 -1.7329 25 6 4.1424 -4.8528 -0.3122 26 8 3.6783 -3.5799 0.1441 27 1 -0.3634 -0.0049 1.0276 28 1 -0.3632 0.8925 -0.5096 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6958 -2.0073 -0.0055 31 1 5.2518 -1.0455 1.4192 32 1 3.8002 -0.1147 1.8617 33 1 3.8008 -1.8883 2.0126 34 1 2.5528 -2.4662 -2.0763 35 1 4.1048 -1.8403 -2.6904 36 1 5.6011 -5.9671 -3.5328 37 1 4.0195 -6.0668 -4.3433 38 1 7.4836 -6.8246 -9.0495 39 1 4.0841 -5.9987 -2.1417 40 1 2.5392 -5.2204 -1.7116 41 1 5.2323 -4.8627 -0.3166 42 1 3.7739 -5.6343 0.3523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487343395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:39 Heat of formation + Delta-G solvation = -143.613546 kcal Electronic energy + Delta-G solvation = -24499.280085 eV Core-core repulsion = 20797.629238 eV Total energy + Delta-G solvation = -3701.650846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64135 -40.62410 -39.42843 -36.67443 -35.75661 -34.59351 -33.21086 -31.82997 -30.74182 -29.68905 -28.51476 -27.64247 -25.26421 -23.90471 -22.36449 -21.39244 -20.62337 -19.61379 -18.40158 -18.07612 -17.82397 -17.28652 -16.88958 -16.79477 -16.46194 -16.21261 -15.92313 -15.85442 -15.57375 -14.82692 -14.76009 -14.63408 -14.49296 -14.25969 -13.63570 -13.56149 -13.35818 -13.21439 -13.12796 -12.92099 -12.89798 -12.75185 -12.62868 -12.55836 -12.05271 -11.82294 -11.72833 -11.31130 -11.14951 -10.93386 -10.90991 -10.28024 -10.17885 -9.63679 -8.69595 -8.35517 -6.14418 1.21265 1.42601 1.43704 1.48220 1.55194 1.66567 1.94260 2.23424 2.26226 2.58372 2.99069 3.20517 3.43916 3.64248 3.68164 3.91698 3.98647 4.00707 4.11536 4.22936 4.29254 4.34357 4.39675 4.44605 4.50519 4.53421 4.67743 4.69632 4.73100 4.84322 4.91304 4.93826 5.13184 5.28654 5.33022 5.41059 5.46951 6.00642 6.14070 6.19186 6.59747 7.03212 7.05881 7.28387 8.73741 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.002629 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.484875 B =10648.446763 C =11043.516514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.504 3.496 3 O -0.600 6.600 4 N -0.710 5.710 5 C 0.155 3.845 6 H 0.082 0.918 7 C -0.150 4.150 8 C 0.086 3.914 9 H 0.074 0.926 10 C 0.086 3.914 11 N -0.612 5.612 12 C 0.533 3.467 13 O -0.565 6.565 14 C -0.122 4.122 15 S -0.156 6.156 16 C -0.543 4.543 17 H 0.086 0.914 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 1.000 3.000 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.256 1.256 24 C 0.064 3.936 25 C 0.051 3.949 26 O -0.368 6.368 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.418 0.582 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 2.553 23.483 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.293 3.707 3 O -0.482 6.482 4 N -0.363 5.363 5 C 0.049 3.951 6 H 0.100 0.900 7 C -0.208 4.208 8 C 0.027 3.973 9 H 0.092 0.908 10 C -0.037 4.037 11 N -0.347 5.347 12 C 0.321 3.679 13 O -0.443 6.443 14 C -0.273 4.273 15 S 0.071 5.929 16 C -0.691 4.691 17 H 0.104 0.896 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.179 1.179 24 C -0.058 4.058 25 C -0.026 4.026 26 O -0.287 6.287 27 H 0.130 0.870 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.255 0.745 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.434 4.760 22.501 26.145 hybrid contribution 0.192 -2.067 -0.316 2.099 sum -12.242 2.694 22.186 25.482 Atomic orbital electron populations 1.21898 0.88405 1.05977 1.06208 1.21577 0.92240 0.82824 0.74025 1.90712 1.72077 1.33226 1.52145 1.46054 1.06437 1.09396 1.74454 1.20857 0.81243 0.94913 0.98050 0.89959 1.21995 1.01649 1.02254 0.94890 1.22570 0.98629 0.87218 0.88907 0.90796 1.22279 1.01726 0.84556 0.95134 1.48140 1.59196 1.08497 1.18844 1.20232 0.76447 0.90356 0.80825 1.90694 1.54198 1.42591 1.56828 1.23353 1.05119 0.97006 1.01832 1.85682 1.75928 1.12312 1.18948 1.23185 1.45396 0.91709 1.08804 0.89632 1.26155 0.94199 1.04210 0.94701 1.70192 1.38580 1.36007 1.10125 0.84937 0.77931 0.76195 0.78821 1.19316 1.20513 1.17925 1.22822 1.03059 0.88315 0.91593 1.23175 0.99294 0.85969 0.94147 1.87906 1.72946 1.14074 1.53735 0.87014 0.89262 0.87735 0.74487 0.91057 0.93232 0.90596 0.89306 0.90752 0.87062 0.87088 0.92021 0.87757 0.88193 0.92720 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.30 71.24 0.73 -0.78 16 2 C 0.50 9.15 7.90 87.65 0.69 9.84 16 3 O -0.60 -17.07 16.76 -3.04 -0.05 -17.13 16 4 N -0.71 -10.35 4.24 -442.53 -1.88 -12.23 16 5 C 0.16 2.71 2.42 44.99 0.11 2.82 16 6 H 0.08 1.82 7.58 -2.39 -0.02 1.80 16 7 C -0.15 -2.36 9.34 71.98 0.67 -1.69 16 8 C 0.09 1.50 2.53 30.70 0.08 1.58 16 9 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 10 C 0.09 1.94 5.86 86.35 0.51 2.44 16 11 N -0.61 -15.36 3.02 -817.32 -2.47 -17.83 16 12 C 0.53 19.52 7.73 87.65 0.68 20.20 16 13 O -0.56 -26.35 15.33 -3.03 -0.05 -26.39 16 14 C -0.12 -4.66 4.53 71.23 0.32 -4.34 16 15 S -0.16 -8.54 20.57 -56.49 -1.16 -9.71 16 16 C -0.54 -30.27 9.50 67.96 0.65 -29.63 16 17 H 0.09 4.36 7.80 -2.91 -0.02 4.34 16 18 C 0.01 0.67 5.49 84.86 0.47 1.14 16 19 N -0.91 -55.67 13.22 21.65 0.29 -55.38 16 20 Si 1.00 42.65 29.55 68.60 2.03 44.68 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 24 C 0.06 0.99 6.54 86.35 0.56 1.55 16 25 C 0.05 0.59 6.98 72.08 0.50 1.10 16 26 O -0.37 -5.09 9.22 -148.98 -1.37 -6.46 16 27 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.42 4.11 8.01 -92.70 -0.74 3.37 16 31 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.07 7.69 -2.39 -0.02 1.05 16 34 H 0.09 1.72 7.27 -2.39 -0.02 1.70 16 35 H 0.07 2.15 7.08 -2.39 -0.02 2.14 16 36 H 0.11 3.75 7.66 -2.39 -0.02 3.73 16 37 H 0.11 3.76 8.02 -2.39 -0.02 3.74 16 38 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 39 H 0.10 1.57 6.05 -2.39 -0.01 1.56 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -82.61 361.12 1.59 -81.02 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.29 Total: 15.19 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.97 Total: 4.24 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -4.06 Total: -85.44 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -1.47 Total: -49.98 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.71 kcal Total: -82.61 1.59 -81.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487343395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.595 kcal (2) G-P(sol) polarization free energy of solvation -82.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds