Wall clock time and date at job start Fri Apr 10 2020 18:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 115.54853 * 2 1 4 4 O 1.21281 * 119.99912 * 214.41982 * 3 2 1 5 5 N 1.34767 * 119.99889 * 34.42388 * 3 2 1 6 6 C 1.46506 * 120.00003 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.47073 * 34.99607 * 6 5 3 8 8 C 1.53002 * 109.47035 * 274.99925 * 6 5 3 9 9 O 1.42907 * 109.46886 * 294.99817 * 8 6 5 10 10 C 1.52997 * 109.47289 * 154.99849 * 6 5 3 11 11 N 1.46502 * 109.47004 * 304.99911 * 10 6 5 12 12 C 1.34771 * 119.99986 * 180.02562 * 11 10 6 13 13 O 1.21282 * 120.00389 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00119 * 180.02562 * 12 11 10 15 15 S 1.81005 * 109.47056 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99644 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00528 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99863 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99635 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47025 * 89.99683 * 20 18 16 22 22 H 1.48497 * 109.47045 * 209.99841 * 20 18 16 23 23 H 1.48501 * 109.46992 * 329.99585 * 20 18 16 24 24 C 1.52995 * 117.50045 * 145.67741 * 2 1 3 25 25 C 1.53007 * 117.49728 * 214.33370 * 2 1 3 26 26 H 1.09000 * 109.47062 * 85.58132 * 1 2 3 27 27 H 1.09000 * 109.47007 * 205.58025 * 1 2 3 28 28 H 1.09000 * 109.46716 * 325.58218 * 1 2 3 29 29 H 0.96996 * 120.00319 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.47000 * 54.99213 * 8 6 5 31 31 H 1.09000 * 109.47089 * 174.99822 * 8 6 5 32 32 H 0.96699 * 113.99517 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47322 * 64.99970 * 10 6 5 34 34 H 1.09004 * 109.46881 * 185.00331 * 10 6 5 35 35 H 0.97000 * 119.99888 * 359.97438 * 11 10 6 36 36 H 1.09009 * 109.46829 * 299.99408 * 14 12 11 37 37 H 1.08993 * 109.47537 * 59.99430 * 14 12 11 38 38 H 0.97004 * 119.99407 * 179.97438 * 19 18 16 39 39 H 1.09001 * 117.49673 * 215.00376 * 24 2 1 40 40 H 1.08997 * 117.49890 * 0.02562 * 24 2 1 41 41 H 1.09003 * 117.49511 * 359.97438 * 25 2 1 42 42 H 1.09003 * 117.49475 * 144.97254 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2232 1.5331 -0.5937 5 7 1.6020 2.3828 0.6598 6 6 2.2341 3.7045 0.6603 7 1 2.7171 3.8766 -0.3016 8 6 3.2802 3.7691 1.7750 9 8 2.6316 3.6598 3.0437 10 6 1.1703 4.7785 0.8963 11 7 0.1068 4.6401 -0.1017 12 6 -0.9433 5.4847 -0.0890 13 8 -1.0081 6.3592 0.7488 14 6 -2.0376 5.3420 -1.1152 15 16 -3.2960 6.6127 -0.8361 16 6 -4.4183 6.2228 -2.1374 17 1 -4.2069 5.4004 -2.8047 18 6 -5.5738 6.9735 -2.3055 19 7 -5.8312 7.9761 -1.4925 20 14 -6.7639 6.5597 -3.6846 21 1 -7.7680 5.5813 -3.1949 22 1 -7.4543 7.7966 -4.1303 23 1 -6.0154 5.9724 -4.8248 24 6 2.2365 -1.1208 0.7652 25 6 2.2365 -1.1207 -0.7655 26 1 -0.3633 0.0792 -1.0246 27 1 -0.3633 -0.9269 0.4437 28 1 -0.3633 0.8478 0.5809 29 1 0.7675 2.2442 1.1344 30 1 3.9880 2.9487 1.6569 31 1 3.8121 4.7189 1.7195 32 1 3.2355 3.6927 3.7982 33 1 0.7494 4.6599 1.8946 34 1 1.6248 5.7654 0.8084 35 1 0.1588 3.9409 -0.7721 36 1 -1.6169 5.4600 -2.1139 37 1 -2.4922 4.3553 -1.0268 38 1 -6.6385 8.5009 -1.6103 39 1 3.1714 -0.8747 1.2687 40 1 1.6113 -1.8584 1.2683 41 1 1.6111 -1.8582 -1.2687 42 1 3.1712 -0.8745 -1.2693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487947353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:49 Heat of formation + Delta-G solvation = -103.849328 kcal Electronic energy + Delta-G solvation = -24019.835911 eV Core-core repulsion = 20319.909370 eV Total energy + Delta-G solvation = -3699.926541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.67506 -39.23135 -37.91660 -36.75919 -35.49372 -33.65709 -32.43291 -30.95365 -29.25036 -28.59929 -25.74243 -25.29433 -24.12512 -22.85334 -21.22097 -20.36922 -19.95181 -17.95313 -17.87246 -17.33147 -16.78131 -16.32186 -15.72766 -15.41580 -15.15980 -14.84641 -14.80970 -14.73650 -14.10342 -14.02258 -13.75176 -13.42673 -13.19209 -12.94406 -12.85984 -12.63158 -12.57670 -12.30474 -11.88116 -11.81086 -11.54879 -11.06702 -11.02878 -10.93599 -10.76844 -10.44883 -10.38875 -10.01980 -9.82443 -9.49692 -9.37359 -9.07639 -8.92998 -8.24311 -6.50561 -6.22181 -3.92728 2.17816 2.71312 3.01716 3.08288 3.22061 3.27547 3.31572 3.44146 3.69001 3.89666 4.19996 4.23387 4.29747 4.45699 4.46314 4.57155 4.74887 4.98731 5.11324 5.12483 5.13187 5.21813 5.25692 5.28107 5.37160 5.42520 5.49188 5.53083 5.64087 5.75491 5.79544 5.86451 5.89651 6.11589 6.13051 6.54661 7.18491 7.26374 7.59093 7.65623 7.90437 8.34749 8.58327 9.23211 10.85243 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.002867 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.057697 B = 9764.653887 C =11140.435658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.167 4.167 3 C 0.552 3.448 4 O -0.543 6.543 5 N -0.713 5.713 6 C 0.138 3.862 7 H 0.107 0.893 8 C 0.068 3.932 9 O -0.566 6.566 10 C 0.117 3.883 11 N -0.740 5.740 12 C 0.532 3.468 13 O -0.515 6.515 14 C -0.153 4.153 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.149 4.149 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.407 0.593 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.380 0.620 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.602 -17.499 5.750 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.170 4.170 3 C 0.339 3.661 4 O -0.420 6.420 5 N -0.366 5.366 6 C 0.032 3.968 7 H 0.125 0.875 8 C -0.012 4.012 9 O -0.372 6.372 10 C -0.008 4.008 11 N -0.396 5.396 12 C 0.318 3.682 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.186 4.186 25 C -0.181 4.181 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.244 0.756 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.584 -15.760 6.403 25.194 hybrid contribution -0.505 -1.573 -1.584 2.289 sum 18.079 -17.333 4.819 25.505 Atomic orbital electron populations 1.21385 0.90097 1.02912 1.03019 1.21490 0.96147 0.89339 1.10066 1.19536 0.84125 0.84893 0.77537 1.90693 1.23322 1.83817 1.44204 1.45962 1.27701 1.09210 1.53724 1.21375 0.93804 0.82388 0.99196 0.87509 1.22513 0.94221 1.00685 0.83773 1.86491 1.38272 1.97051 1.15369 1.21487 0.87759 0.97758 0.93794 1.46000 1.22950 1.36005 1.34606 1.20307 0.81891 0.80682 0.85303 1.90713 1.77197 1.32999 1.37965 1.23531 0.99767 1.06969 1.00131 1.85401 1.17512 1.37237 1.43107 1.22871 1.08552 1.19928 1.17060 0.90937 1.24994 0.97245 0.94485 0.96853 1.70019 1.25970 1.17930 1.36363 0.86167 0.80258 0.78012 0.81063 1.20262 1.20753 1.19689 1.23101 1.01941 0.98379 0.95207 1.23050 1.02620 0.98180 0.94282 0.91227 0.91297 0.91724 0.75625 0.92710 0.92209 0.77253 0.89693 0.90158 0.76853 0.89251 0.89259 0.92178 0.88476 0.87711 0.87838 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.79 37.16 0.36 -0.43 16 2 C -0.17 -1.35 2.61 -155.65 -0.41 -1.76 16 3 C 0.55 5.68 7.35 -10.99 -0.08 5.60 16 4 O -0.54 -7.25 15.92 5.56 0.09 -7.16 16 5 N -0.71 -6.44 4.36 -53.80 -0.23 -6.68 16 6 C 0.14 1.28 2.53 -67.93 -0.17 1.11 16 7 H 0.11 1.05 7.58 -51.93 -0.39 0.66 16 8 C 0.07 0.54 6.85 37.16 0.25 0.80 16 9 O -0.57 -4.60 12.64 -35.23 -0.45 -5.05 16 10 C 0.12 1.34 5.12 -4.04 -0.02 1.32 16 11 N -0.74 -9.69 5.39 -60.30 -0.32 -10.02 16 12 C 0.53 9.78 7.85 -10.99 -0.09 9.70 16 13 O -0.51 -11.57 15.86 5.56 0.09 -11.48 16 14 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 20 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.15 -1.01 9.88 -26.70 -0.26 -1.27 16 25 C -0.14 -1.08 9.77 -26.69 -0.26 -1.34 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.39 7.90 -51.93 -0.41 -0.02 16 28 H 0.06 0.43 6.39 -51.93 -0.33 0.10 16 29 H 0.41 3.46 6.90 -40.82 -0.28 3.17 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.38 1.54 9.12 45.56 0.42 1.95 16 33 H 0.08 1.10 7.39 -51.93 -0.38 0.71 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.37 8.14 -40.82 -0.33 4.04 16 36 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.94 7.67 -51.93 -0.40 0.54 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -36.44 372.12 -7.43 -43.87 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.46 Total: 5.83 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.25 Total: -2.05 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.17 Total: -42.08 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.27 Total: -23.68 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.44 -7.43 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487947353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.978 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds