Wall clock time and date at job start Fri Apr 10 2020 18:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.38224 * 120.41548 * 95.00114 * 11 10 9 13 13 C 1.39379 * 118.35424 * 179.97438 * 12 11 10 14 14 O 1.35510 * 120.51308 * 179.97438 * 13 12 11 15 15 N 1.32824 * 118.97054 * 359.97438 * 13 12 11 16 16 C 1.31761 * 120.72313 * 359.97438 * 15 13 12 17 17 C 1.50700 * 119.09484 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47154 * 90.00386 * 17 16 15 19 19 C 1.34776 * 120.00019 * 180.02562 * 18 17 16 20 20 O 1.21619 * 120.00108 * 359.97438 * 19 18 17 21 21 C 1.43197 * 120.00143 * 180.02562 * 19 18 17 22 22 C 9.37399 * 145.23093 * 255.36123 * 9 1 2 23 23 C 9.51435 * 143.02421 * 270.58914 * 10 1 2 24 24 C 1.52998 * 117.50302 * 355.63778 * 23 22 21 25 25 C 1.52995 * 117.50172 * 286.97733 * 23 22 21 26 26 N 1.31785 * 121.81312 * 359.74643 * 16 15 13 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 30 30 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 31 31 H 1.08007 * 120.82419 * 359.95516 * 12 11 10 32 32 H 0.96705 * 114.00410 * 90.00125 * 14 13 12 33 33 H 1.09003 * 109.47245 * 210.00633 * 17 16 15 34 34 H 1.09002 * 109.46921 * 330.00017 * 17 16 15 35 35 H 0.96998 * 119.99614 * 359.97438 * 18 17 16 36 36 H 1.09004 * 115.54881 * 141.30961 * 23 22 21 37 37 H 1.08997 * 117.49668 * 0.02562 * 24 23 22 38 38 H 1.08999 * 117.50408 * 145.01582 * 24 23 22 39 39 H 1.09004 * 117.50096 * 214.98387 * 25 23 22 40 40 H 1.09005 * 117.49990 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.5936 -2.1957 -0.0011 12 6 6.3006 -2.1700 1.1864 13 6 7.6694 -1.9118 1.1364 14 8 8.4048 -1.8759 2.2740 15 7 8.2417 -1.7015 -0.0436 16 6 7.5307 -1.7359 -1.1523 17 6 8.2177 -1.4926 -2.4713 18 7 8.6912 -2.7668 -3.0177 19 6 9.3405 -2.7941 -4.1984 20 8 9.5329 -1.7610 -4.8106 21 6 9.8028 -4.0396 -4.7327 22 6 10.1817 -5.0513 -5.1767 23 6 10.6574 -6.3331 -5.7251 24 6 9.6304 -7.4547 -5.8924 25 6 10.6822 -7.5387 -4.7835 26 7 6.2362 -1.9826 -1.1401 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0014 29 1 3.8490 -3.0424 0.8892 30 1 3.8483 -3.0428 -0.8908 31 1 5.8046 -2.3454 2.1297 32 1 8.7787 -2.7308 2.5279 33 1 7.5146 -1.0371 -3.1687 34 1 9.0655 -0.8240 -2.3215 35 1 8.5380 -3.5907 -2.5292 36 1 11.4493 -6.2604 -6.4707 37 1 8.6026 -7.2441 -5.5970 38 1 9.7466 -8.1202 -6.7477 39 1 11.4901 -8.2595 -4.9098 40 1 10.3469 -7.3834 -3.7580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489076555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:52 Heat of formation + Delta-G solvation = 76.596707 kcal Electronic energy + Delta-G solvation = -24112.801307 eV Core-core repulsion = 20317.548294 eV Total energy + Delta-G solvation = -3795.253014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44890 -39.84255 -38.09107 -37.95398 -35.91456 -34.85876 -33.32757 -33.14225 -31.92900 -31.01996 -28.15655 -27.00462 -25.00789 -23.49239 -22.97874 -22.93756 -22.03863 -21.50737 -19.46658 -18.92155 -18.16388 -17.54081 -17.08647 -16.63197 -16.07520 -15.61152 -15.51367 -15.49727 -14.91492 -14.69121 -14.26989 -13.87559 -13.61493 -13.28668 -13.08639 -12.92846 -12.81582 -12.45316 -12.30314 -12.13163 -12.09658 -11.84036 -11.46367 -10.93829 -10.89595 -10.72930 -10.51218 -10.50292 -10.25223 -10.20249 -9.70878 -9.61983 -9.47729 -9.40227 -9.03268 -7.39429 -5.86016 -3.24416 0.55908 0.80397 1.18953 1.91179 2.66052 2.97877 3.08643 3.33446 3.37405 3.40879 3.43670 3.57482 3.65893 3.82103 4.14331 4.22215 4.39643 4.50910 4.52123 4.71321 4.91163 4.99460 5.06516 5.11713 5.18311 5.28894 5.38829 5.45647 5.47337 5.49180 5.51599 5.56691 5.89117 6.00841 6.19423 6.32375 6.82863 6.84867 7.04267 7.12364 7.77011 7.84029 7.90154 8.30993 9.06513 9.79312 9.96070 11.31387 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.002652 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.573577 B =10555.675103 C =11181.308560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.883 3.117 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.095 0.905 9 N -0.745 5.745 10 C 0.202 3.798 11 C 0.194 3.806 12 C -0.217 4.217 13 C 0.355 3.645 14 O -0.473 6.473 15 N -0.530 5.530 16 C 0.315 3.685 17 C 0.196 3.804 18 N -0.707 5.707 19 C 0.639 3.361 20 O -0.518 6.518 21 C -0.214 4.214 22 C -0.048 4.048 23 C -0.069 4.069 24 C -0.158 4.158 25 C -0.159 4.159 26 N -0.491 5.491 27 H 0.262 0.738 28 H 0.363 0.637 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.159 0.841 32 H 0.406 0.594 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.405 0.595 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.439 -15.925 -4.127 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.185 4.185 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.113 0.887 9 N -0.392 5.392 10 C 0.075 3.925 11 C 0.049 3.951 12 C -0.241 4.241 13 C 0.168 3.832 14 O -0.280 6.280 15 N -0.256 5.256 16 C 0.046 3.954 17 C 0.071 3.929 18 N -0.359 5.359 19 C 0.426 3.574 20 O -0.395 6.395 21 C -0.217 4.217 22 C -0.051 4.051 23 C -0.086 4.086 24 C -0.195 4.195 25 C -0.196 4.196 26 N -0.208 5.208 27 H 0.072 0.928 28 H 0.196 0.804 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.177 0.823 32 H 0.265 0.735 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.239 0.761 36 H 0.153 0.847 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 23.602 -14.488 -5.308 28.198 hybrid contribution 0.299 0.401 1.267 1.362 sum 23.901 -14.087 -4.041 28.036 Atomic orbital electron populations 1.69687 1.05030 1.26071 1.56689 1.24633 0.95205 0.97197 1.01436 0.86585 0.79094 0.84994 0.78045 1.20756 1.21436 1.20597 1.18978 0.79757 0.95015 1.44225 0.88743 1.42518 1.04076 1.01165 1.91450 1.19677 0.80968 0.90816 1.01079 1.22275 0.98334 0.87782 0.86716 1.23034 0.94879 1.04149 1.02030 1.19380 0.87842 0.90971 0.85050 1.84760 1.69857 1.37292 1.36121 1.67679 1.42627 1.16627 0.98645 1.22669 0.86776 0.93162 0.92842 1.19958 0.99036 0.85845 0.88041 1.45576 1.58129 1.10573 1.21620 1.14504 0.77647 0.84881 0.80368 1.90893 1.56363 1.32934 1.59295 1.20245 1.04099 0.94458 1.02935 1.21151 0.94407 0.93389 0.96130 1.18962 1.03352 0.82809 1.03499 1.23135 0.96010 0.98979 1.01374 1.23127 1.02149 0.97953 0.96402 1.68207 1.08990 1.12540 1.31047 0.92817 0.80431 0.92949 0.92568 0.82317 0.73534 0.87644 0.88107 0.76056 0.84654 0.87897 0.87242 0.87304 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 13.97 55.49 0.78 -27.90 16 2 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 3 Si 0.88 22.27 27.73 -169.99 -4.71 17.56 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 7 C -0.25 -6.91 10.47 -15.06 -0.16 -7.07 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.40 5.40 -61.08 -0.33 -17.73 16 10 C 0.20 3.68 6.61 -5.20 -0.03 3.64 16 11 C 0.19 3.08 6.19 -82.31 -0.51 2.57 16 12 C -0.22 -2.91 9.79 -39.16 -0.38 -3.30 16 13 C 0.35 4.57 7.83 -16.70 -0.13 4.44 16 14 O -0.47 -4.89 13.57 -18.22 -0.25 -5.14 16 15 N -0.53 -7.30 10.36 -10.79 -0.11 -7.41 16 16 C 0.31 4.41 7.01 -157.23 -1.10 3.31 16 17 C 0.20 2.43 6.10 -5.19 -0.03 2.40 16 18 N -0.71 -7.92 5.54 -63.95 -0.35 -8.28 16 19 C 0.64 8.30 7.65 -14.34 -0.11 8.19 16 20 O -0.52 -8.47 17.09 5.26 0.09 -8.38 16 21 C -0.21 -2.45 13.58 -38.91 -0.53 -2.98 16 22 C -0.05 -0.46 13.45 -37.15 -0.50 -0.96 16 23 C -0.07 -0.41 6.22 -93.36 -0.58 -0.99 16 24 C -0.16 -0.74 10.21 -26.70 -0.27 -1.01 16 25 C -0.16 -0.70 10.21 -26.70 -0.27 -0.97 16 26 N -0.49 -7.83 10.27 -7.05 -0.07 -7.90 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.36 8.61 5.52 -40.82 -0.23 8.39 16 29 H 0.05 0.87 8.06 -51.93 -0.42 0.46 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 32 H 0.41 1.84 9.06 45.56 0.41 2.25 16 33 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.41 3.82 8.43 -40.82 -0.34 3.48 16 36 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -35.88 366.13 -8.13 -44.01 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.97 Total: 8.14 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -4.71 Total: 7.52 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -0.09 Total: -69.22 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.16 Total: -13.52 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.88 -8.13 -44.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489076555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.604 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds