Wall clock time and date at job start Fri Apr 10 2020 18:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.38224 * 120.41548 * 95.00114 * 11 10 9 13 13 C 1.39379 * 118.35424 * 179.97438 * 12 11 10 14 14 O 1.35510 * 120.51308 * 179.97438 * 13 12 11 15 15 N 1.32824 * 118.97054 * 359.97438 * 13 12 11 16 16 C 1.31761 * 120.72313 * 359.97438 * 15 13 12 17 17 C 1.50700 * 119.09484 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47154 * 90.00386 * 17 16 15 19 19 C 1.34776 * 120.00019 * 180.02562 * 18 17 16 20 20 O 1.21619 * 120.00108 * 359.97438 * 19 18 17 21 21 C 1.43197 * 120.00143 * 180.02562 * 19 18 17 22 22 C 9.37399 * 145.23093 * 255.36123 * 9 1 2 23 23 C 9.51435 * 143.02421 * 270.58914 * 10 1 2 24 24 C 1.52998 * 117.50302 * 355.63778 * 23 22 21 25 25 C 1.52995 * 117.50172 * 286.97733 * 23 22 21 26 26 N 1.31785 * 121.81312 * 359.74643 * 16 15 13 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 30 30 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 31 31 H 1.08007 * 120.82419 * 359.95516 * 12 11 10 32 32 H 0.96705 * 114.00410 * 90.00125 * 14 13 12 33 33 H 1.09003 * 109.47245 * 210.00633 * 17 16 15 34 34 H 1.09002 * 109.46921 * 330.00017 * 17 16 15 35 35 H 0.96998 * 119.99614 * 359.97438 * 18 17 16 36 36 H 1.09004 * 115.54881 * 141.30961 * 23 22 21 37 37 H 1.08997 * 117.49668 * 0.02562 * 24 23 22 38 38 H 1.08999 * 117.50408 * 145.01582 * 24 23 22 39 39 H 1.09004 * 117.50096 * 214.98387 * 25 23 22 40 40 H 1.09005 * 117.49990 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.5936 -2.1957 -0.0011 12 6 6.3006 -2.1700 1.1864 13 6 7.6694 -1.9118 1.1364 14 8 8.4048 -1.8759 2.2740 15 7 8.2417 -1.7015 -0.0436 16 6 7.5307 -1.7359 -1.1523 17 6 8.2177 -1.4926 -2.4713 18 7 8.6912 -2.7668 -3.0177 19 6 9.3405 -2.7941 -4.1984 20 8 9.5329 -1.7610 -4.8106 21 6 9.8028 -4.0396 -4.7327 22 6 10.1817 -5.0513 -5.1767 23 6 10.6574 -6.3331 -5.7251 24 6 9.6304 -7.4547 -5.8924 25 6 10.6822 -7.5387 -4.7835 26 7 6.2362 -1.9826 -1.1401 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0014 29 1 3.8490 -3.0424 0.8892 30 1 3.8483 -3.0428 -0.8908 31 1 5.8046 -2.3454 2.1297 32 1 8.7787 -2.7308 2.5279 33 1 7.5146 -1.0371 -3.1687 34 1 9.0655 -0.8240 -2.3215 35 1 8.5380 -3.5907 -2.5292 36 1 11.4493 -6.2604 -6.4707 37 1 8.6026 -7.2441 -5.5970 38 1 9.7466 -8.1202 -6.7477 39 1 11.4901 -8.2595 -4.9098 40 1 10.3469 -7.3834 -3.7580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489076555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:51 Heat of formation + Delta-G solvation = 46.896908 kcal Electronic energy + Delta-G solvation = -24114.089187 eV Core-core repulsion = 20317.548294 eV Total energy + Delta-G solvation = -3796.540893 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.53444 -40.86489 -38.88255 -38.52626 -37.35945 -36.12417 -34.73643 -33.98639 -33.32926 -32.61562 -29.22698 -28.53627 -25.77078 -24.97310 -24.10623 -23.30383 -23.13904 -22.72559 -20.48900 -19.96681 -19.78471 -18.83352 -17.67809 -17.61688 -17.16946 -16.70175 -16.56636 -16.51119 -16.16029 -15.90229 -15.65147 -15.15271 -14.93968 -14.58106 -14.30506 -14.24023 -13.83034 -13.54246 -13.39888 -13.15744 -13.06727 -12.90810 -12.49280 -12.42905 -12.22798 -11.88591 -11.87364 -11.72315 -11.64101 -11.14088 -11.09418 -10.82521 -10.71055 -10.50985 -10.44872 -9.40999 -8.07230 -5.42341 -0.50073 -0.29243 0.32598 1.10673 1.32988 1.36637 1.41858 1.75053 2.14680 2.20526 2.36169 2.42699 2.62554 3.00871 3.02053 3.07891 3.25281 3.68731 3.71150 3.81257 3.82714 3.95896 4.01594 4.06160 4.17586 4.37248 4.42715 4.52239 4.76329 4.76851 4.83061 4.91767 4.96367 5.05561 5.07989 5.20780 5.69561 5.74239 6.07059 6.12032 6.14990 6.46735 6.80622 6.80807 6.98544 7.71675 7.88891 9.13328 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.002652 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.573577 B =10555.675103 C =11181.308560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.054 4.054 3 Si 0.946 3.054 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.232 4.232 8 H 0.071 0.929 9 N -0.751 5.751 10 C 0.201 3.799 11 C 0.179 3.821 12 C -0.208 4.208 13 C 0.366 3.634 14 O -0.473 6.473 15 N -0.534 5.534 16 C 0.317 3.683 17 C 0.199 3.801 18 N -0.694 5.694 19 C 0.643 3.357 20 O -0.561 6.561 21 C -0.265 4.265 22 C -0.017 4.017 23 C -0.091 4.091 24 C -0.154 4.154 25 C -0.147 4.147 26 N -0.514 5.514 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.180 0.820 32 H 0.432 0.568 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.414 0.586 36 H 0.156 0.844 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.102 -17.367 -3.459 31.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.246 4.246 3 Si 0.774 3.226 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.363 4.363 8 H 0.089 0.911 9 N -0.397 5.397 10 C 0.075 3.925 11 C 0.035 3.965 12 C -0.232 4.232 13 C 0.178 3.822 14 O -0.285 6.285 15 N -0.260 5.260 16 C 0.048 3.952 17 C 0.074 3.926 18 N -0.346 5.346 19 C 0.431 3.569 20 O -0.441 6.441 21 C -0.268 4.268 22 C -0.020 4.020 23 C -0.109 4.109 24 C -0.190 4.190 25 C -0.184 4.184 26 N -0.231 5.231 27 H 0.069 0.931 28 H 0.195 0.805 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.197 0.803 32 H 0.296 0.704 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.250 0.750 36 H 0.174 0.826 37 H 0.111 0.889 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 26.316 -16.007 -4.598 31.144 hybrid contribution -0.432 0.632 1.095 1.336 sum 25.884 -15.376 -3.503 30.310 Atomic orbital electron populations 1.69840 1.06773 1.26716 1.59246 1.25358 0.95978 1.00711 1.02548 0.85559 0.78499 0.80704 0.77864 1.20995 1.21686 1.18577 1.18997 0.81709 0.93962 1.41582 0.91069 1.42521 1.02743 1.03126 1.91308 1.19738 0.82462 0.88678 1.01581 1.21887 0.97151 0.89711 0.87781 1.23141 0.95075 1.03124 1.01832 1.19437 0.87888 0.89527 0.85350 1.84720 1.69540 1.39473 1.34725 1.67759 1.42579 1.16715 0.98949 1.22722 0.86209 0.92911 0.93365 1.19891 0.98903 0.86341 0.87424 1.45443 1.57291 1.10656 1.21168 1.14662 0.77044 0.84974 0.80231 1.90856 1.58290 1.34500 1.60488 1.20098 1.06415 0.95065 1.05192 1.21944 0.92260 0.93574 0.94184 1.19353 1.04811 0.81665 1.05060 1.23252 0.95339 0.98071 1.02382 1.23261 1.02497 0.96738 0.95899 1.68124 1.09951 1.13444 1.31594 0.93142 0.80547 0.90823 0.93167 0.80292 0.70392 0.88516 0.87614 0.74956 0.82649 0.88890 0.85114 0.84967 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.60 13.97 21.65 0.30 -61.29 16 2 C -0.05 -3.13 5.50 84.86 0.47 -2.66 16 3 Si 0.95 46.11 27.73 68.60 1.90 48.02 16 4 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.26 -11.73 6.52 99.48 0.65 -11.08 16 7 C -0.23 -12.86 10.47 84.04 0.88 -11.98 16 8 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 9 N -0.75 -34.37 5.40 -347.17 -1.87 -36.25 16 10 C 0.20 7.11 6.61 85.63 0.57 7.68 16 11 C 0.18 5.39 6.19 42.45 0.26 5.65 16 12 C -0.21 -5.01 9.79 22.54 0.22 -4.79 16 13 C 0.37 8.36 7.83 84.82 0.66 9.02 16 14 O -0.47 -8.08 13.57 -88.12 -1.20 -9.27 16 15 N -0.53 -13.60 10.36 -300.70 -3.12 -16.72 16 16 C 0.32 8.54 7.01 138.76 0.97 9.51 16 17 C 0.20 4.93 6.10 85.63 0.52 5.45 16 18 N -0.69 -15.58 5.54 -474.48 -2.63 -18.20 16 19 C 0.64 17.12 7.65 85.49 0.65 17.78 16 20 O -0.56 -19.06 17.09 -4.09 -0.07 -19.13 16 21 C -0.26 -6.11 13.58 30.08 0.41 -5.70 16 22 C -0.02 -0.31 13.45 31.22 0.42 0.11 16 23 C -0.09 -0.90 6.22 -12.57 -0.08 -0.98 16 24 C -0.15 -1.07 10.21 30.62 0.31 -0.76 16 25 C -0.15 -0.88 10.21 30.61 0.31 -0.57 16 26 N -0.51 -15.88 10.27 -176.23 -1.81 -17.69 16 27 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 28 H 0.36 16.62 5.52 -92.71 -0.51 16.11 16 29 H 0.07 2.32 8.06 -2.38 -0.02 2.30 16 30 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.18 3.51 8.06 -2.91 -0.02 3.48 16 32 H 0.43 2.21 9.06 -74.05 -0.67 1.54 16 33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.41 7.66 8.43 -92.71 -0.78 6.88 16 36 H 0.16 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -78.41 366.13 -2.80 -81.20 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.89 Total: 21.57 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 6.59 Total: 27.77 kcal Atomic # 7 Polarization: -141.03 SS G_CDS: -9.13 Total: -150.16 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.27 Total: -28.40 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.02 kcal Total: -78.41 -2.80 -81.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489076555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.100 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds