Wall clock time and date at job start Fri Apr 10 2020 18:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.98906 * 2 1 4 4 C 1.54099 * 109.87564 * 238.91050 * 2 1 3 5 5 C 1.54811 * 104.18709 * 238.54657 * 4 2 1 6 6 H 1.08999 * 110.90333 * 97.35506 * 5 4 2 7 7 C 1.50699 * 110.90515 * 220.92434 * 5 4 2 8 8 O 1.21283 * 120.00478 * 357.07340 * 7 5 4 9 9 N 1.34777 * 119.99772 * 177.07773 * 7 5 4 10 10 C 1.46499 * 120.00199 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47555 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 S 1.80999 * 109.46903 * 179.72354 * 15 13 12 17 17 C 1.76200 * 99.99730 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00384 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47506 * 89.99666 * 21 19 17 23 23 H 1.48498 * 109.47217 * 210.00061 * 21 19 17 24 24 H 1.48502 * 109.46767 * 329.99807 * 21 19 17 25 25 C 1.54996 * 102.12652 * 339.13963 * 5 4 2 26 26 O 1.43750 * 109.87443 * 121.08416 * 2 1 3 27 27 H 1.08996 * 109.47669 * 181.08496 * 1 2 3 28 28 H 1.09002 * 109.47267 * 301.08882 * 1 2 3 29 29 H 1.08999 * 109.46889 * 61.08299 * 1 2 3 30 30 H 1.09002 * 110.48399 * 119.87281 * 4 2 1 31 31 H 1.09000 * 110.49066 * 357.22896 * 4 2 1 32 32 H 0.97000 * 120.00323 * 359.97438 * 9 7 5 33 33 H 1.08998 * 109.47134 * 59.99329 * 10 9 7 34 34 H 1.09005 * 109.46544 * 299.99437 * 10 9 7 35 35 H 1.08998 * 109.47382 * 59.99561 * 11 10 9 36 36 H 1.09002 * 109.47216 * 299.99998 * 11 10 9 37 37 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 38 38 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 39 39 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 40 40 H 0.97002 * 120.00288 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.61800 * 155.50431 * 25 5 4 42 42 H 1.08996 * 110.62120 * 278.50776 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7483 -1.2410 5 6 2.9195 -1.8915 -0.6574 6 1 2.3540 -2.8222 -0.6103 7 6 4.1826 -2.0727 -1.4591 8 8 4.3739 -1.3998 -2.4499 9 7 5.0997 -2.9825 -1.0752 10 6 6.3280 -3.1583 -1.8541 11 6 7.1911 -4.2436 -1.2077 12 7 8.4196 -4.4189 -1.9863 13 6 9.3368 -5.3287 -1.6023 14 8 9.1453 -6.0020 -0.6118 15 6 10.6034 -5.5047 -2.3998 16 16 11.6270 -6.7846 -1.6316 17 6 12.9995 -6.7825 -2.7365 18 1 13.0117 -6.1099 -3.5814 19 6 14.0656 -7.6447 -2.5205 20 7 14.0516 -8.4635 -1.4899 21 14 15.5211 -7.6421 -3.6914 22 1 16.5359 -6.6670 -3.2177 23 1 16.1221 -8.9992 -3.7370 24 1 15.0622 -7.2580 -5.0505 25 6 3.2380 -1.3651 0.7652 26 8 2.0187 -0.6980 1.1578 27 1 -0.3634 -1.0274 0.0195 28 1 -0.3634 0.5307 0.8801 29 1 -0.3633 0.4969 -0.8995 30 1 2.6619 -0.0860 -1.8574 31 1 1.2246 -1.1549 -1.8198 32 1 4.9470 -3.5206 -0.2826 33 1 6.8815 -2.2196 -1.8765 34 1 6.0734 -3.4543 -2.8719 35 1 6.6378 -5.1824 -1.1850 36 1 7.4456 -3.9473 -0.1900 37 1 8.5725 -3.8807 -2.7786 38 1 10.3531 -5.8022 -3.4181 39 1 11.1531 -4.5638 -2.4208 40 1 14.7964 -9.0663 -1.3391 41 1 3.4581 -2.1922 1.4401 42 1 4.0688 -0.6601 0.7365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491124545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:57 Heat of formation + Delta-G solvation = -129.904991 kcal Electronic energy + Delta-G solvation = -22789.667072 eV Core-core repulsion = 19088.610673 eV Total energy + Delta-G solvation = -3701.056399 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90035 -39.41353 -38.97381 -36.09096 -34.10094 -32.89764 -32.45489 -32.28076 -30.27337 -28.13324 -26.40677 -25.51501 -24.19660 -22.72320 -21.71086 -20.76014 -20.29257 -18.26675 -17.83699 -16.90045 -16.55378 -16.22744 -16.07324 -15.89192 -15.56504 -15.46551 -15.08600 -14.82551 -14.41304 -13.98159 -13.83121 -13.77727 -13.23085 -13.03575 -12.90016 -12.59971 -12.51788 -12.43797 -12.12567 -11.86296 -11.71763 -11.40285 -11.28354 -11.08347 -11.05137 -10.78976 -10.35685 -10.23376 -9.85000 -9.59990 -9.53647 -9.11003 -9.04231 -8.28098 -6.53744 -6.24398 -3.95471 2.10781 2.41386 2.98999 3.05910 3.20890 3.26088 3.28940 3.35969 3.71222 3.81537 4.17699 4.18376 4.23799 4.39087 4.45517 4.63301 4.65108 4.74270 4.87920 5.06377 5.07327 5.10643 5.11017 5.13035 5.19520 5.38546 5.49228 5.52177 5.53258 5.55606 5.68595 5.69139 5.83980 5.89421 6.09274 6.34888 6.43616 6.94375 7.55104 7.57598 7.69345 8.32574 8.48822 9.21100 10.83024 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.052926 B = 0.001660 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.912603 B =16858.716775 C =17212.904637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.138 4.138 5 C -0.147 4.147 6 H 0.115 0.885 7 C 0.526 3.474 8 O -0.533 6.533 9 N -0.724 5.724 10 C 0.108 3.892 11 C 0.111 3.889 12 N -0.737 5.737 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.060 3.940 26 O -0.369 6.369 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.405 0.595 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.401 0.599 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.269 0.731 41 H 0.102 0.898 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.434 16.061 1.131 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.176 4.176 5 C -0.168 4.168 6 H 0.133 0.867 7 C 0.311 3.689 8 O -0.409 6.409 9 N -0.377 5.377 10 C -0.016 4.016 11 C -0.014 4.014 12 N -0.393 5.393 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.017 4.017 26 O -0.288 6.288 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.240 0.760 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.616 15.271 2.377 29.917 hybrid contribution 1.300 0.684 -2.121 2.580 sum -24.316 15.955 0.256 29.084 Atomic orbital electron populations 1.21942 0.93409 1.02959 1.02568 1.22818 0.95408 0.96018 0.84493 0.91047 1.22990 0.99781 0.96649 0.98175 1.22916 0.95076 1.02204 0.96628 0.86737 1.20229 0.84243 0.79275 0.85140 1.90725 1.77935 1.45637 1.26576 1.45810 1.20203 1.40684 1.31002 1.21491 0.84985 0.99367 0.95796 1.21315 0.85853 0.98317 0.95931 1.45808 1.20006 1.42124 1.31346 1.20335 0.84038 0.78508 0.85057 1.90710 1.77527 1.44670 1.26026 1.23532 0.96988 1.06754 1.03145 1.85393 1.16868 1.43703 1.37370 1.22868 1.05212 1.26250 1.14145 0.90869 1.24992 0.98149 0.94515 0.95881 1.70016 1.31670 1.21384 1.27208 0.86160 0.81225 0.77645 0.80427 1.20252 1.20732 1.19685 1.23493 0.88470 0.96962 0.92778 1.88925 1.39213 1.67476 1.33216 0.91773 0.91802 0.91077 0.88588 0.89698 0.76023 0.90527 0.90526 0.90899 0.90881 0.76468 0.89053 0.89044 0.92153 0.87969 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.36 37.16 0.35 -0.41 16 2 C 0.07 0.45 4.06 -26.15 -0.11 0.34 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.14 -0.89 6.04 -25.20 -0.15 -1.04 16 5 C -0.15 -0.88 3.51 -89.76 -0.32 -1.20 16 6 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 7 C 0.53 4.36 7.15 -10.99 -0.08 4.28 16 8 O -0.53 -6.47 15.47 5.55 0.09 -6.38 16 9 N -0.72 -4.83 5.54 -60.30 -0.33 -5.16 16 10 C 0.11 0.84 5.79 -4.04 -0.02 0.82 16 11 C 0.11 1.07 5.79 -4.04 -0.02 1.05 16 12 N -0.74 -8.86 5.56 -60.29 -0.33 -9.20 16 13 C 0.53 9.43 7.85 -10.98 -0.09 9.34 16 14 O -0.52 -11.17 15.86 5.55 0.09 -11.08 16 15 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 21 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.06 0.36 7.16 38.21 0.27 0.63 16 26 O -0.37 -2.95 11.19 -35.23 -0.39 -3.35 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.76 6.90 -51.93 -0.36 0.40 16 31 H 0.08 0.47 7.70 -51.93 -0.40 0.07 16 32 H 0.41 1.73 8.47 -40.82 -0.35 1.39 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16 38 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 39 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -36.60 369.54 -8.05 -44.65 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.48 Total: -0.48 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 0.26 Total: -1.77 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.06 Total: -39.53 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.22 Total: -20.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.60 -8.05 -44.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491124545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.257 kcal (2) G-P(sol) polarization free energy of solvation -36.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds