Wall clock time and date at job start Fri Apr 10 2020 18:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.98906 * 2 1 4 4 C 1.54099 * 109.87564 * 238.91050 * 2 1 3 5 5 C 1.54811 * 104.18709 * 238.54657 * 4 2 1 6 6 H 1.08999 * 110.90333 * 97.35506 * 5 4 2 7 7 C 1.50699 * 110.90515 * 220.92434 * 5 4 2 8 8 O 1.21283 * 120.00478 * 357.07340 * 7 5 4 9 9 N 1.34777 * 119.99772 * 177.07773 * 7 5 4 10 10 C 1.46499 * 120.00199 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47555 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 S 1.80999 * 109.46903 * 179.72354 * 15 13 12 17 17 C 1.76200 * 99.99730 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00384 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47506 * 89.99666 * 21 19 17 23 23 H 1.48498 * 109.47217 * 210.00061 * 21 19 17 24 24 H 1.48502 * 109.46767 * 329.99807 * 21 19 17 25 25 C 1.54996 * 102.12652 * 339.13963 * 5 4 2 26 26 O 1.43750 * 109.87443 * 121.08416 * 2 1 3 27 27 H 1.08996 * 109.47669 * 181.08496 * 1 2 3 28 28 H 1.09002 * 109.47267 * 301.08882 * 1 2 3 29 29 H 1.08999 * 109.46889 * 61.08299 * 1 2 3 30 30 H 1.09002 * 110.48399 * 119.87281 * 4 2 1 31 31 H 1.09000 * 110.49066 * 357.22896 * 4 2 1 32 32 H 0.97000 * 120.00323 * 359.97438 * 9 7 5 33 33 H 1.08998 * 109.47134 * 59.99329 * 10 9 7 34 34 H 1.09005 * 109.46544 * 299.99437 * 10 9 7 35 35 H 1.08998 * 109.47382 * 59.99561 * 11 10 9 36 36 H 1.09002 * 109.47216 * 299.99998 * 11 10 9 37 37 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 38 38 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 39 39 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 40 40 H 0.97002 * 120.00288 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.61800 * 155.50431 * 25 5 4 42 42 H 1.08996 * 110.62120 * 278.50776 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7483 -1.2410 5 6 2.9195 -1.8915 -0.6574 6 1 2.3540 -2.8222 -0.6103 7 6 4.1826 -2.0727 -1.4591 8 8 4.3739 -1.3998 -2.4499 9 7 5.0997 -2.9825 -1.0752 10 6 6.3280 -3.1583 -1.8541 11 6 7.1911 -4.2436 -1.2077 12 7 8.4196 -4.4189 -1.9863 13 6 9.3368 -5.3287 -1.6023 14 8 9.1453 -6.0020 -0.6118 15 6 10.6034 -5.5047 -2.3998 16 16 11.6270 -6.7846 -1.6316 17 6 12.9995 -6.7825 -2.7365 18 1 13.0117 -6.1099 -3.5814 19 6 14.0656 -7.6447 -2.5205 20 7 14.0516 -8.4635 -1.4899 21 14 15.5211 -7.6421 -3.6914 22 1 16.5359 -6.6670 -3.2177 23 1 16.1221 -8.9992 -3.7370 24 1 15.0622 -7.2580 -5.0505 25 6 3.2380 -1.3651 0.7652 26 8 2.0187 -0.6980 1.1578 27 1 -0.3634 -1.0274 0.0195 28 1 -0.3634 0.5307 0.8801 29 1 -0.3633 0.4969 -0.8995 30 1 2.6619 -0.0860 -1.8574 31 1 1.2246 -1.1549 -1.8198 32 1 4.9470 -3.5206 -0.2826 33 1 6.8815 -2.2196 -1.8765 34 1 6.0734 -3.4543 -2.8719 35 1 6.6378 -5.1824 -1.1850 36 1 7.4456 -3.9473 -0.1900 37 1 8.5725 -3.8807 -2.7786 38 1 10.3531 -5.8022 -3.4181 39 1 11.1531 -4.5638 -2.4208 40 1 14.7964 -9.0663 -1.3391 41 1 3.4581 -2.1922 1.4401 42 1 4.0688 -0.6601 0.7365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491124545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:56 Heat of formation + Delta-G solvation = -158.778541 kcal Electronic energy + Delta-G solvation = -22790.919123 eV Core-core repulsion = 19088.610673 eV Total energy + Delta-G solvation = -3702.308450 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50737 -40.64289 -39.68768 -37.00471 -35.10030 -34.57896 -33.44682 -32.80943 -31.51224 -29.20964 -27.64869 -26.86687 -24.87850 -23.42855 -22.27869 -21.83299 -21.08691 -19.87016 -18.79007 -17.95841 -17.33708 -17.21255 -16.98373 -16.87299 -16.66297 -16.38125 -16.14523 -16.03067 -15.68432 -15.25461 -14.72596 -14.56436 -14.41900 -14.30811 -13.71435 -13.45730 -13.34339 -13.16220 -12.97366 -12.91543 -12.89791 -12.82580 -12.60289 -12.32134 -11.85834 -11.77364 -11.72935 -11.15017 -11.13983 -10.93903 -10.74735 -10.29379 -10.27732 -10.15412 -8.66080 -8.34564 -6.12369 1.24825 1.42817 1.45045 1.46346 1.55735 1.58481 1.83501 2.27492 2.48825 2.86994 2.99850 3.30211 3.33068 3.58161 3.72325 3.81699 3.98275 4.00146 4.00521 4.15407 4.18681 4.31357 4.37907 4.45199 4.52818 4.65879 4.67546 4.80230 4.81326 4.85614 4.94822 4.97811 5.09976 5.22728 5.29660 5.37817 5.42550 5.87010 6.20133 6.37110 6.45025 7.07156 7.08759 7.19473 8.74552 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.052926 B = 0.001660 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.912603 B =16858.716775 C =17212.904637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.067 3.933 3 H 0.068 0.932 4 C -0.137 4.137 5 C -0.139 4.139 6 H 0.136 0.864 7 C 0.527 3.473 8 O -0.574 6.574 9 N -0.714 5.714 10 C 0.119 3.881 11 C 0.115 3.885 12 N -0.712 5.712 13 C 0.538 3.462 14 O -0.562 6.562 15 C -0.131 4.131 16 S -0.150 6.150 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.259 1.259 25 C 0.059 3.941 26 O -0.388 6.388 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.419 0.581 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.418 0.582 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.124 0.876 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.118 17.010 -0.036 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 H 0.086 0.914 4 C -0.175 4.175 5 C -0.161 4.161 6 H 0.154 0.846 7 C 0.314 3.686 8 O -0.453 6.453 9 N -0.367 5.367 10 C -0.006 4.006 11 C -0.010 4.010 12 N -0.367 5.367 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.283 4.283 16 S 0.077 5.923 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.183 1.183 25 C -0.018 4.018 26 O -0.307 6.307 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.256 0.744 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.142 0.858 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.336 16.251 1.204 30.970 hybrid contribution 1.399 0.478 -1.752 2.293 sum -24.937 16.729 -0.549 30.033 Atomic orbital electron populations 1.21941 0.92342 1.03214 1.03122 1.22901 0.96299 0.95782 0.84092 0.91356 1.22960 0.99920 0.96579 0.98056 1.22919 0.94016 1.03004 0.96133 0.84616 1.20569 0.84764 0.78644 0.84645 1.90713 1.78844 1.47260 1.28500 1.45713 1.19442 1.40345 1.31172 1.21305 0.85077 0.98516 0.95687 1.21392 0.84788 0.99027 0.95749 1.45515 1.19458 1.40181 1.31580 1.19995 0.84269 0.79127 0.84279 1.90702 1.78443 1.46881 1.27952 1.23381 0.96807 1.04639 1.03439 1.85543 1.19112 1.47831 1.39786 1.23218 1.05546 1.26503 1.14296 0.89894 1.26102 1.01405 0.93872 0.97648 1.70178 1.32820 1.22379 1.29340 0.84967 0.76989 0.77845 0.78264 1.19356 1.20326 1.18255 1.23611 0.87691 0.97400 0.93087 1.88910 1.39928 1.67799 1.34068 0.91600 0.92020 0.89816 0.90360 0.88681 0.74416 0.90515 0.90485 0.90812 0.90788 0.74458 0.87089 0.87067 0.91992 0.85792 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.36 71.98 0.67 -0.64 16 2 C 0.07 0.80 4.06 30.97 0.13 0.92 16 3 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.14 -1.63 6.04 31.58 0.19 -1.44 16 5 C -0.14 -1.44 3.51 -10.24 -0.04 -1.47 16 6 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 7 C 0.53 7.95 7.15 87.66 0.63 8.58 16 8 O -0.57 -13.50 15.47 -3.04 -0.05 -13.55 16 9 N -0.71 -8.01 5.54 -463.06 -2.57 -10.57 16 10 C 0.12 1.60 5.79 86.38 0.50 2.10 16 11 C 0.11 1.97 5.79 86.38 0.50 2.47 16 12 N -0.71 -15.55 5.56 -463.06 -2.57 -18.12 16 13 C 0.54 18.36 7.85 87.66 0.69 19.04 16 14 O -0.56 -24.39 15.86 -3.04 -0.05 -24.44 16 15 C -0.13 -4.95 6.16 71.24 0.44 -4.52 16 16 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 17 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 18 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -55.34 13.22 21.65 0.29 -55.06 16 21 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 C 0.06 0.60 7.16 72.66 0.52 1.12 16 26 O -0.39 -5.72 11.19 -148.98 -1.67 -7.39 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 1.23 6.90 -2.39 -0.02 1.22 16 31 H 0.09 0.91 7.70 -2.39 -0.02 0.89 16 32 H 0.42 2.52 8.47 -92.71 -0.79 1.74 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.42 6.49 8.47 -92.71 -0.79 5.70 16 38 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.06 0.69 8.04 -2.39 -0.02 0.67 16 Total: -1.00 -81.16 369.54 -0.94 -82.10 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -0.53 Total: 13.93 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.34 Total: -2.74 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -4.85 Total: -83.75 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.76 Total: -45.37 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -81.16 -0.94 -82.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491124545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.680 kcal (2) G-P(sol) polarization free energy of solvation -81.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds