Wall clock time and date at job start Fri Apr 10 2020 18:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47097 * 2 1 4 4 C 1.42905 * 114.00250 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46886 * 329.99844 * 4 3 2 6 6 C 1.52998 * 109.47027 * 89.99845 * 4 3 2 7 7 C 1.50695 * 109.47019 * 210.00385 * 4 3 2 8 8 O 1.21284 * 120.00505 * 354.99140 * 7 4 3 9 9 N 1.34779 * 120.00007 * 174.99948 * 7 4 3 10 10 C 1.46497 * 120.00099 * 179.97438 * 9 7 4 11 11 C 1.53501 * 114.20671 * 155.00122 * 10 9 7 12 12 N 1.47065 * 87.98741 * 87.71545 * 11 10 9 13 13 C 1.34775 * 136.05752 * 207.08848 * 12 11 10 14 14 O 1.21276 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47116 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00102 * 179.72368 * 17 16 15 20 20 N 1.31626 * 120.00155 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00292 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47210 * 89.99890 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00121 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00210 * 21 19 17 25 25 C 1.47067 * 87.88381 * 27.34024 * 12 11 10 26 26 H 1.09007 * 109.47261 * 60.00045 * 1 2 3 27 27 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47397 * 300.00171 * 1 2 3 29 29 H 1.08998 * 109.47699 * 240.00106 * 2 1 3 30 30 H 1.08998 * 109.47438 * 119.99972 * 2 1 3 31 31 H 1.09001 * 109.47288 * 60.00245 * 6 4 3 32 32 H 1.09003 * 109.46522 * 180.02562 * 6 4 3 33 33 H 1.08996 * 109.47022 * 299.99974 * 6 4 3 34 34 H 0.97002 * 119.99788 * 359.97438 * 9 7 4 35 35 H 1.09000 * 113.28654 * 21.92894 * 10 9 7 36 36 H 1.09001 * 113.46643 * 332.93246 * 11 10 9 37 37 H 1.08996 * 113.46488 * 202.49706 * 11 10 9 38 38 H 1.09001 * 109.47434 * 59.99478 * 15 13 12 39 39 H 1.08999 * 109.47072 * 299.99957 * 15 13 12 40 40 H 0.97004 * 120.00604 * 179.97438 * 20 19 17 41 41 H 1.09010 * 113.46411 * 87.43777 * 25 12 11 42 42 H 1.08997 * 113.47100 * 217.87349 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9386 1.5007 -1.4433 7 6 3.8347 2.7263 0.7099 8 8 2.9864 3.5047 1.0913 9 7 5.1386 2.9938 0.9214 10 6 5.5312 4.2249 1.6116 11 6 6.8949 4.1463 2.3120 12 7 7.5114 4.5707 1.0461 13 6 8.7080 4.4091 0.4473 14 8 9.5795 3.7694 0.9968 15 6 8.9633 5.0242 -0.9045 16 16 10.6483 4.6327 -1.4370 17 6 10.6736 5.4498 -2.9978 18 1 9.7998 5.9825 -3.3427 19 6 11.8187 5.4142 -3.7814 20 7 12.8856 4.7695 -3.3587 21 14 11.8454 6.2799 -5.4364 22 1 12.3121 7.6781 -5.2563 23 1 12.7677 5.5645 -6.3546 24 1 10.4774 6.2853 -6.0142 25 6 6.2498 5.2543 0.7239 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 3.5059 2.3592 -1.9568 32 1 5.0253 1.5863 -1.4436 33 1 3.6465 0.5848 -1.9571 34 1 5.8171 2.3712 0.6166 35 1 4.7363 4.6462 2.2270 36 1 7.1711 3.1355 2.6120 37 1 7.0120 4.8722 3.1166 38 1 8.8452 6.1059 -0.8397 39 1 8.2515 4.6237 -1.6263 40 1 13.6858 4.7443 -3.9064 41 1 6.1969 6.2724 1.1099 42 1 5.9765 5.1876 -0.3292 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498103497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:06 Heat of formation + Delta-G solvation = -78.406687 kcal Electronic energy + Delta-G solvation = -23726.080334 eV Core-core repulsion = 20027.257069 eV Total energy + Delta-G solvation = -3698.823265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93544 -39.69913 -38.11651 -37.39920 -34.09316 -32.62257 -32.46878 -30.69733 -30.12292 -27.85642 -26.13781 -25.50161 -24.98440 -23.15045 -21.92705 -20.80275 -19.11666 -17.85652 -17.63414 -17.42814 -16.66128 -16.35739 -16.12018 -15.57508 -15.30904 -15.06353 -14.83795 -14.60004 -13.99688 -13.74055 -13.64764 -13.53074 -13.05087 -13.00310 -12.75427 -12.63363 -12.61317 -12.34961 -12.11759 -11.95608 -11.76311 -11.45628 -11.25345 -11.08892 -11.05178 -10.79465 -10.31770 -9.86415 -9.80899 -9.55561 -9.35534 -9.10479 -8.72097 -8.29414 -6.55558 -6.25581 -3.96895 2.25393 2.41615 2.67866 2.98572 3.19863 3.21999 3.27447 3.47718 3.51987 4.03865 4.16483 4.27869 4.47621 4.51541 4.57389 4.71417 4.83759 4.85243 4.95990 4.98260 5.09793 5.12002 5.21744 5.30791 5.36503 5.37422 5.39678 5.47104 5.51261 5.52522 5.75302 5.76954 5.82735 5.90294 6.09199 6.14523 6.68231 7.14524 7.55914 7.75375 7.88241 8.31403 8.45380 9.19794 10.81799 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.002632 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.360086 B =10637.699590 C =11713.431914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.087 0.913 6 C -0.173 4.173 7 C 0.521 3.479 8 O -0.517 6.517 9 N -0.706 5.706 10 C 0.107 3.893 11 C 0.098 3.902 12 N -0.654 5.654 13 C 0.562 3.438 14 O -0.513 6.513 15 C -0.145 4.145 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.087 3.913 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.406 0.594 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.097 0.903 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.023 -7.328 8.414 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.011 3.989 5 H 0.105 0.895 6 C -0.230 4.230 7 C 0.306 3.694 8 O -0.391 6.391 9 N -0.359 5.359 10 C 0.001 3.999 11 C -0.026 4.026 12 N -0.394 5.394 13 C 0.352 3.648 14 O -0.387 6.387 15 C -0.295 4.295 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.038 4.038 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.242 0.758 35 H 0.144 0.856 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.071 -7.659 9.344 24.289 hybrid contribution -0.327 0.873 -1.904 2.120 sum -21.398 -6.786 7.440 23.649 Atomic orbital electron populations 1.21730 0.93348 1.02275 1.03455 1.22608 0.96017 0.83397 1.00216 1.88054 1.18186 1.26471 1.94957 1.21852 0.83941 0.96172 0.96949 0.89480 1.22255 1.02039 1.04059 0.94673 1.20415 0.82237 0.87693 0.79063 1.90727 1.50072 1.48767 1.49510 1.45493 1.07319 1.23142 1.59989 1.22250 0.96824 0.85963 0.94882 1.23274 0.88247 1.02087 0.89023 1.49800 1.13173 1.55361 1.21069 1.19963 0.78657 0.79584 0.86611 1.90723 1.42000 1.40162 1.65816 1.23472 1.07506 1.03382 0.95156 1.85391 1.05044 1.70546 1.22355 1.22846 1.02361 1.38898 1.04241 0.90929 1.24995 0.94571 0.95326 0.98678 1.70013 1.02813 1.39696 1.37732 0.86160 0.78187 0.79341 0.81772 1.20235 1.20713 1.19676 1.23556 0.81224 0.97235 1.01782 0.91688 0.90974 0.91658 0.93044 0.93189 0.90864 0.90586 0.91001 0.75831 0.85629 0.89950 0.88462 0.89301 0.89376 0.92141 0.88548 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.15 0.38 -0.56 16 2 C 0.05 0.38 6.47 37.15 0.24 0.62 16 3 O -0.36 -3.75 9.53 -55.09 -0.52 -4.27 16 4 C 0.07 0.62 3.13 -27.89 -0.09 0.54 16 5 H 0.09 0.54 7.79 -51.93 -0.40 0.14 16 6 C -0.17 -1.31 9.48 37.16 0.35 -0.95 16 7 C 0.52 5.56 7.18 -10.99 -0.08 5.48 16 8 O -0.52 -7.51 16.10 -14.30 -0.23 -7.74 16 9 N -0.71 -6.29 5.37 -53.49 -0.29 -6.58 16 10 C 0.11 0.94 4.61 -67.67 -0.31 0.63 16 11 C 0.10 0.94 8.38 -8.51 -0.07 0.87 16 12 N -0.65 -8.64 3.69 -185.08 -0.68 -9.32 16 13 C 0.56 10.43 8.10 -10.99 -0.09 10.34 16 14 O -0.51 -11.58 16.64 5.56 0.09 -11.48 16 15 C -0.14 -2.91 5.98 36.00 0.22 -2.70 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 21 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.09 0.85 8.26 -8.38 -0.07 0.78 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 30 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 33 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 34 H 0.41 3.25 8.55 -40.82 -0.35 2.90 16 35 H 0.13 1.04 7.45 -51.93 -0.39 0.66 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 41 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -37.10 375.90 -8.35 -45.45 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.56 Total: -1.15 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 0.68 Total: 2.22 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.24 Total: -41.07 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.66 Total: -23.50 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.10 -8.35 -45.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498103497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.954 kcal (2) G-P(sol) polarization free energy of solvation -37.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds