Wall clock time and date at job start Fri Apr 10 2020 18:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.46229 * 2 1 4 4 C 1.36934 * 120.00548 * 59.99610 * 3 2 1 5 5 H 1.08004 * 119.99288 * 0.02562 * 4 3 2 6 6 C 1.38805 * 120.00389 * 180.02562 * 4 3 2 7 7 N 1.31624 * 120.00257 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99929 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47174 * 270.00277 * 8 6 4 10 10 H 1.48501 * 109.47062 * 30.00228 * 8 6 4 11 11 H 1.48499 * 109.46981 * 150.00382 * 8 6 4 12 12 C 1.53045 * 109.45681 * 119.96894 * 2 1 3 13 13 C 1.53160 * 109.32541 * 181.38274 * 12 2 1 14 14 N 1.46931 * 108.76954 * 305.35938 * 13 12 2 15 15 C 1.34771 * 120.62670 * 233.58617 * 14 13 12 16 16 O 1.21284 * 119.99919 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00345 * 0.02562 * 15 14 13 18 18 C 1.53042 * 113.15430 * 280.54578 * 17 15 14 19 19 S 1.81495 * 89.86736 * 211.86704 * 18 17 15 20 20 O 1.42093 * 112.71868 * 280.43017 * 19 18 17 21 21 O 1.42101 * 112.86005 * 136.68110 * 19 18 17 22 22 C 1.53043 * 113.15349 * 180.11666 * 17 15 14 23 23 C 1.46917 * 118.74095 * 53.60749 * 14 13 12 24 24 C 1.53036 * 109.45848 * 240.01998 * 2 1 3 25 25 H 1.09000 * 109.47018 * 60.00117 * 1 2 3 26 26 H 1.09002 * 109.47455 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47153 * 300.00477 * 1 2 3 28 28 H 0.96999 * 119.99694 * 240.00134 * 3 2 1 29 29 H 0.97001 * 119.99885 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.49709 * 301.32131 * 12 2 1 31 31 H 1.09004 * 109.49751 * 61.41875 * 12 2 1 32 32 H 1.09001 * 109.59344 * 185.56942 * 13 12 2 33 33 H 1.09000 * 109.70937 * 65.21075 * 13 12 2 34 34 H 1.08999 * 112.49732 * 50.33597 * 17 15 14 35 35 H 1.09009 * 113.14581 * 327.11508 * 18 17 15 36 36 H 1.08999 * 113.14766 * 96.58995 * 18 17 15 37 37 H 1.09002 * 113.15227 * 263.40626 * 22 17 15 38 38 H 1.09000 * 113.14757 * 32.84989 * 22 17 15 39 39 H 1.09000 * 109.58852 * 186.60291 * 23 14 13 40 40 H 1.08999 * 109.58811 * 66.17765 * 23 14 13 41 41 H 1.08996 * 109.50011 * 298.58254 * 24 2 1 42 42 H 1.09002 * 109.49906 * 58.64844 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6872 2.2245 1.0269 5 1 1.0666 1.8710 1.8371 6 6 2.1493 3.5334 1.0266 7 7 1.8316 4.3437 2.0140 8 14 3.2232 4.1444 -0.3744 9 1 4.6510 3.9029 -0.0453 10 1 2.8725 3.4168 -1.6205 11 1 2.9998 5.5993 -0.5710 12 6 2.0398 -0.7208 1.2501 13 6 3.5710 -0.6890 1.2646 14 7 4.0676 -1.2494 0.0004 15 6 4.9615 -2.2580 0.0007 16 8 5.3641 -2.7117 -1.0496 17 6 5.4609 -2.8220 1.3059 18 6 6.5476 -1.9627 1.9562 19 16 7.3046 -3.4567 2.6554 20 8 6.6351 -3.9171 3.8211 21 8 8.7208 -3.4645 2.5383 22 6 6.4711 -3.9571 1.1236 23 6 3.5714 -0.6892 -1.2639 24 6 2.0398 -0.7210 -1.2499 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.5757 1.6985 -0.7275 29 1 2.1548 5.2583 2.0139 30 1 1.6574 -0.2207 2.1398 31 1 1.6975 -1.7557 1.2384 32 1 3.9412 -1.2848 2.0989 33 1 3.9163 0.3397 1.3688 34 1 4.6497 -3.0757 1.9882 35 1 7.1860 -1.4580 1.2310 36 1 6.1596 -1.2831 2.7150 37 1 6.0190 -4.9471 1.1856 38 1 7.0943 -3.8380 0.2373 39 1 3.9417 -1.2853 -2.0980 40 1 3.9145 0.3402 -1.3670 41 1 1.6976 -1.7558 -1.2380 42 1 1.6570 -0.2214 -2.1398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673959067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:27 Heat of formation + Delta-G solvation = -59.784168 kcal Electronic energy + Delta-G solvation = -25799.084567 eV Core-core repulsion = 22101.068836 eV Total energy + Delta-G solvation = -3698.015732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.49923 -38.35641 -37.63343 -36.44918 -35.94513 -34.73015 -32.41019 -30.97706 -29.82617 -28.06507 -26.97314 -25.03370 -23.59444 -23.10371 -22.13301 -19.62492 -19.13513 -18.42160 -17.89313 -17.44488 -16.80259 -16.60003 -16.14375 -15.56166 -15.32164 -14.75600 -14.55507 -14.15296 -13.80787 -13.70202 -13.56698 -13.40113 -13.10027 -12.63691 -12.56286 -12.54160 -12.31442 -12.14815 -11.95822 -11.86302 -11.49067 -11.36007 -11.29110 -11.08252 -10.94775 -10.89737 -10.68145 -10.46981 -10.25983 -9.90412 -9.71539 -9.56361 -9.04503 -8.47125 -7.36174 -5.85531 -3.21473 -0.19965 1.61449 2.51745 2.98315 3.28543 3.31435 3.33927 3.38797 3.73380 3.83967 4.23261 4.50136 4.55444 4.58217 4.84239 5.01333 5.06657 5.08701 5.16803 5.33072 5.37723 5.44610 5.52966 5.55899 5.57942 5.82980 5.84894 5.94950 6.06705 6.20559 6.26580 6.32753 6.44702 6.53741 6.61609 6.85091 6.93369 7.48837 7.89863 8.13438 8.33714 9.11342 9.84274 10.03966 11.32479 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.004094 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.066785 B = 6838.240135 C = 7378.351643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.203 3.797 3 N -0.743 5.743 4 C -0.238 4.238 5 H 0.093 0.907 6 C 0.008 3.992 7 N -0.932 5.932 8 Si 0.877 3.123 9 H -0.286 1.286 10 H -0.278 1.278 11 H -0.292 1.292 12 C -0.135 4.135 13 C 0.110 3.890 14 N -0.595 5.595 15 C 0.537 3.463 16 O -0.546 6.546 17 C -0.095 4.095 18 C -0.593 4.593 19 S 2.415 3.585 20 O -0.910 6.910 21 O -0.923 6.923 22 C -0.578 4.578 23 C 0.114 3.886 24 C -0.133 4.133 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.360 0.640 29 H 0.259 0.741 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.472 -15.942 -1.316 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.112 3.888 3 N -0.386 5.386 4 C -0.368 4.368 5 H 0.110 0.890 6 C -0.188 4.188 7 N -0.580 5.580 8 Si 0.708 3.292 9 H -0.212 1.212 10 H -0.204 1.204 11 H -0.218 1.218 12 C -0.176 4.176 13 C -0.012 4.012 14 N -0.327 5.327 15 C 0.323 3.677 16 O -0.424 6.424 17 C -0.118 4.118 18 C -0.721 4.721 19 S 2.595 3.405 20 O -0.908 6.908 21 O -0.920 6.920 22 C -0.707 4.707 23 C -0.008 4.008 24 C -0.171 4.171 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.194 0.806 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.257 -16.455 -0.731 17.999 hybrid contribution -0.137 1.231 -1.788 2.175 sum 7.120 -15.224 -2.519 16.995 Atomic orbital electron populations 1.22189 0.96853 0.99303 1.02560 1.19491 0.92546 0.85070 0.91652 1.42896 1.61527 1.07665 1.26551 1.18959 1.26544 0.91421 0.99894 0.88965 1.24626 1.00492 0.96314 0.97392 1.69686 1.49631 1.06434 1.32229 0.86675 0.81089 0.78358 0.83081 1.21247 1.20426 1.21819 1.22299 0.94283 0.99472 1.01513 1.21861 0.95527 1.00298 0.83519 1.48093 1.41919 1.34109 1.08543 1.19613 0.79018 0.79520 0.89571 1.90670 1.58384 1.60575 1.32778 1.21564 0.97628 0.94164 0.98457 1.31007 1.09238 1.19583 1.12240 1.08314 0.74849 0.80244 0.77052 1.93730 1.76723 1.77032 1.43285 1.93652 1.26994 1.83738 1.87598 1.30867 1.10492 1.06330 1.22966 1.21590 0.94369 0.98990 0.85846 1.22143 0.94643 1.00948 0.99410 0.93143 0.94324 0.91941 0.80599 0.93063 0.89828 0.92902 0.90941 0.89054 0.84639 0.83317 0.84519 0.85299 0.82827 0.89501 0.91230 0.91354 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.44 37.16 0.31 -2.11 16 2 C 0.20 3.35 0.74 -131.78 -0.10 3.25 16 3 N -0.74 -15.19 3.94 -47.20 -0.19 -15.37 16 4 C -0.24 -5.92 9.16 -15.06 -0.14 -6.06 16 5 H 0.09 2.46 6.93 -52.48 -0.36 2.10 16 6 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 7 N -0.93 -27.51 13.97 55.49 0.78 -26.73 16 8 Si 0.88 20.82 27.74 -169.99 -4.71 16.11 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 C -0.14 -2.02 4.70 -26.63 -0.13 -2.15 16 13 C 0.11 1.53 5.99 -3.72 -0.02 1.51 16 14 N -0.59 -8.33 2.97 -172.79 -0.51 -8.85 16 15 C 0.54 7.24 7.20 -10.99 -0.08 7.16 16 16 O -0.55 -8.87 15.36 5.55 0.09 -8.79 16 17 C -0.09 -0.90 2.47 -91.73 -0.23 -1.12 16 18 C -0.59 -4.62 7.15 37.18 0.27 -4.35 16 19 S 2.41 18.01 7.55 -107.50 -0.81 17.19 16 20 O -0.91 -9.30 18.18 -57.31 -1.04 -10.34 16 21 O -0.92 -9.99 18.18 -57.31 -1.04 -11.03 16 22 C -0.58 -4.39 7.18 37.18 0.27 -4.13 16 23 C 0.11 1.67 6.16 -3.71 -0.02 1.65 16 24 C -0.13 -1.88 4.96 -26.61 -0.13 -2.02 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.13 7.27 -51.93 -0.38 0.75 16 28 H 0.36 7.49 4.32 -40.82 -0.18 7.31 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.08 1.38 7.31 -51.93 -0.38 1.00 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.79 5.42 -51.93 -0.28 0.51 16 33 H 0.09 1.52 7.74 -51.93 -0.40 1.12 16 34 H 0.14 1.01 7.28 -51.93 -0.38 0.64 16 35 H 0.15 1.15 8.11 -51.92 -0.42 0.73 16 36 H 0.14 0.89 7.91 -51.93 -0.41 0.48 16 37 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.15 1.27 7.57 -51.93 -0.39 0.88 16 39 H 0.09 1.26 7.01 -51.93 -0.36 0.89 16 40 H 0.07 1.09 6.94 -51.93 -0.36 0.73 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -35.15 339.25 -8.44 -43.59 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.01 Total: 7.35 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.09 Total: -8.25 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.08 Total: -50.95 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -2.00 Total: -30.16 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.11 kcal Atomic # 16 Polarization: 18.01 SS G_CDS: -0.81 Total: 17.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.15 -8.44 -43.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673959067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.192 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds