Wall clock time and date at job start Fri Apr 10 2020 18:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.46229 * 2 1 4 4 C 1.36934 * 120.00548 * 59.99610 * 3 2 1 5 5 H 1.08004 * 119.99288 * 0.02562 * 4 3 2 6 6 C 1.38805 * 120.00389 * 180.02562 * 4 3 2 7 7 N 1.31624 * 120.00257 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99929 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47174 * 270.00277 * 8 6 4 10 10 H 1.48501 * 109.47062 * 30.00228 * 8 6 4 11 11 H 1.48499 * 109.46981 * 150.00382 * 8 6 4 12 12 C 1.53045 * 109.45681 * 119.96894 * 2 1 3 13 13 C 1.53160 * 109.32541 * 181.38274 * 12 2 1 14 14 N 1.46931 * 108.76954 * 305.35938 * 13 12 2 15 15 C 1.34771 * 120.62670 * 233.58617 * 14 13 12 16 16 O 1.21284 * 119.99919 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00345 * 0.02562 * 15 14 13 18 18 C 1.53042 * 113.15430 * 280.54578 * 17 15 14 19 19 S 1.81495 * 89.86736 * 211.86704 * 18 17 15 20 20 O 1.42093 * 112.71868 * 280.43017 * 19 18 17 21 21 O 1.42101 * 112.86005 * 136.68110 * 19 18 17 22 22 C 1.53043 * 113.15349 * 180.11666 * 17 15 14 23 23 C 1.46917 * 118.74095 * 53.60749 * 14 13 12 24 24 C 1.53036 * 109.45848 * 240.01998 * 2 1 3 25 25 H 1.09000 * 109.47018 * 60.00117 * 1 2 3 26 26 H 1.09002 * 109.47455 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47153 * 300.00477 * 1 2 3 28 28 H 0.96999 * 119.99694 * 240.00134 * 3 2 1 29 29 H 0.97001 * 119.99885 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.49709 * 301.32131 * 12 2 1 31 31 H 1.09004 * 109.49751 * 61.41875 * 12 2 1 32 32 H 1.09001 * 109.59344 * 185.56942 * 13 12 2 33 33 H 1.09000 * 109.70937 * 65.21075 * 13 12 2 34 34 H 1.08999 * 112.49732 * 50.33597 * 17 15 14 35 35 H 1.09009 * 113.14581 * 327.11508 * 18 17 15 36 36 H 1.08999 * 113.14766 * 96.58995 * 18 17 15 37 37 H 1.09002 * 113.15227 * 263.40626 * 22 17 15 38 38 H 1.09000 * 113.14757 * 32.84989 * 22 17 15 39 39 H 1.09000 * 109.58852 * 186.60291 * 23 14 13 40 40 H 1.08999 * 109.58811 * 66.17765 * 23 14 13 41 41 H 1.08996 * 109.50011 * 298.58254 * 24 2 1 42 42 H 1.09002 * 109.49906 * 58.64844 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6872 2.2245 1.0269 5 1 1.0666 1.8710 1.8371 6 6 2.1493 3.5334 1.0266 7 7 1.8316 4.3437 2.0140 8 14 3.2232 4.1444 -0.3744 9 1 4.6510 3.9029 -0.0453 10 1 2.8725 3.4168 -1.6205 11 1 2.9998 5.5993 -0.5710 12 6 2.0398 -0.7208 1.2501 13 6 3.5710 -0.6890 1.2646 14 7 4.0676 -1.2494 0.0004 15 6 4.9615 -2.2580 0.0007 16 8 5.3641 -2.7117 -1.0496 17 6 5.4609 -2.8220 1.3059 18 6 6.5476 -1.9627 1.9562 19 16 7.3046 -3.4567 2.6554 20 8 6.6351 -3.9171 3.8211 21 8 8.7208 -3.4645 2.5383 22 6 6.4711 -3.9571 1.1236 23 6 3.5714 -0.6892 -1.2639 24 6 2.0398 -0.7210 -1.2499 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.5757 1.6985 -0.7275 29 1 2.1548 5.2583 2.0139 30 1 1.6574 -0.2207 2.1398 31 1 1.6975 -1.7557 1.2384 32 1 3.9412 -1.2848 2.0989 33 1 3.9163 0.3397 1.3688 34 1 4.6497 -3.0757 1.9882 35 1 7.1860 -1.4580 1.2310 36 1 6.1596 -1.2831 2.7150 37 1 6.0190 -4.9471 1.1856 38 1 7.0943 -3.8380 0.2373 39 1 3.9417 -1.2853 -2.0980 40 1 3.9145 0.3402 -1.3670 41 1 1.6976 -1.7558 -1.2380 42 1 1.6570 -0.2214 -2.1398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673959067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:25 Heat of formation + Delta-G solvation = -86.756407 kcal Electronic energy + Delta-G solvation = -25800.254171 eV Core-core repulsion = 22101.068836 eV Total energy + Delta-G solvation = -3699.185336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.57040 -39.56979 -38.39433 -37.21798 -36.75487 -36.11163 -34.18985 -32.16426 -31.56031 -29.28837 -27.59340 -26.11018 -25.31767 -24.28316 -23.26322 -20.72803 -19.79693 -19.76198 -19.54684 -18.56395 -17.58560 -17.28272 -17.01684 -16.53110 -16.43082 -16.21973 -16.01151 -15.33576 -15.10117 -14.88767 -14.67240 -14.47820 -14.35069 -14.02381 -13.65216 -13.42661 -13.32766 -13.30473 -12.96373 -12.89033 -12.73883 -12.61472 -12.58793 -12.51444 -12.20221 -12.01282 -11.96400 -11.77056 -11.62998 -11.34035 -11.13421 -10.93119 -10.72169 -9.68300 -9.19089 -7.93560 -5.24249 -0.85236 0.98593 1.38557 1.39269 1.46876 1.53345 1.96364 2.52551 2.71368 3.04876 3.13708 3.38762 3.44088 3.57064 3.72159 3.89888 3.94489 4.03807 4.13657 4.25321 4.28250 4.39980 4.50493 4.62738 4.66850 4.76566 4.85028 4.86081 4.95727 4.99531 5.03504 5.09408 5.17624 5.29537 5.34272 5.56772 5.65310 5.90877 6.31167 6.41831 7.08232 7.17498 7.94723 8.12022 9.27971 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.004094 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.066785 B = 6838.240135 C = 7378.351643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.192 3.808 3 N -0.743 5.743 4 C -0.197 4.197 5 H 0.068 0.932 6 C -0.061 4.061 7 N -0.985 5.985 8 Si 0.935 3.065 9 H -0.285 1.285 10 H -0.256 1.256 11 H -0.307 1.307 12 C -0.133 4.133 13 C 0.113 3.887 14 N -0.597 5.597 15 C 0.536 3.464 16 O -0.575 6.575 17 C -0.104 4.104 18 C -0.595 4.595 19 S 2.461 3.539 20 O -0.933 6.933 21 O -0.955 6.955 22 C -0.571 4.571 23 C 0.112 3.888 24 C -0.122 4.122 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.361 0.639 29 H 0.252 0.748 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -18.363 -2.114 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.102 3.898 3 N -0.387 5.387 4 C -0.328 4.328 5 H 0.086 0.914 6 C -0.252 4.252 7 N -0.637 5.637 8 Si 0.765 3.235 9 H -0.212 1.212 10 H -0.181 1.181 11 H -0.235 1.235 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.328 5.328 15 C 0.323 3.677 16 O -0.455 6.455 17 C -0.127 4.127 18 C -0.723 4.723 19 S 2.643 3.357 20 O -0.930 6.930 21 O -0.952 6.952 22 C -0.700 4.700 23 C -0.010 4.010 24 C -0.161 4.161 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.194 0.806 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.179 0.821 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.552 -18.944 -1.551 20.453 hybrid contribution -0.297 1.867 -1.556 2.449 sum 7.255 -17.077 -3.107 18.812 Atomic orbital electron populations 1.22122 0.96440 1.00912 1.00916 1.19842 0.92788 0.83212 0.93910 1.42945 1.61450 1.09006 1.25272 1.18893 1.23212 0.91306 0.99408 0.91410 1.25237 1.03099 0.97034 0.99815 1.69848 1.52466 1.06581 1.34804 0.85712 0.79434 0.76951 0.81425 1.21188 1.18100 1.23461 1.22234 0.94951 1.00581 0.99471 1.21795 0.94855 0.99449 0.84787 1.48122 1.42208 1.34322 1.08134 1.20199 0.78099 0.78814 0.90585 1.90659 1.59145 1.61396 1.34346 1.21772 0.98925 0.95037 0.96967 1.31063 1.08738 1.20002 1.12476 1.06961 0.73359 0.79290 0.76119 1.93696 1.76932 1.77581 1.44787 1.93607 1.29328 1.84308 1.87994 1.30823 1.09781 1.07157 1.22267 1.21540 0.94671 0.98295 0.86529 1.22060 0.94197 1.01706 0.98111 0.93710 0.91123 0.94622 0.80572 0.93888 0.91887 0.89990 0.87462 0.92098 0.82075 0.83289 0.83032 0.83043 0.83356 0.89252 0.92724 0.89292 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 8.44 71.98 0.61 -3.81 16 2 C 0.19 5.92 0.74 3.63 0.00 5.92 16 3 N -0.74 -29.67 3.94 -303.23 -1.20 -30.86 16 4 C -0.20 -9.85 9.16 84.03 0.77 -9.08 16 5 H 0.07 3.72 6.93 -2.91 -0.02 3.69 16 6 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 7 N -0.98 -60.03 13.97 21.65 0.30 -59.73 16 8 Si 0.93 43.47 27.74 68.60 1.90 45.37 16 9 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.26 -10.78 6.52 99.48 0.65 -10.13 16 11 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 12 C -0.13 -3.64 4.70 30.66 0.14 -3.49 16 13 C 0.11 2.89 5.99 86.35 0.52 3.41 16 14 N -0.60 -15.18 2.97 -818.97 -2.43 -17.62 16 15 C 0.54 12.97 7.20 87.66 0.63 13.60 16 16 O -0.58 -17.45 15.36 -3.04 -0.05 -17.49 16 17 C -0.10 -1.62 2.47 -11.51 -0.03 -1.65 16 18 C -0.59 -7.73 7.15 72.00 0.51 -7.21 16 19 S 2.46 31.19 7.55 -56.49 -0.43 30.76 16 20 O -0.93 -16.75 18.18 -127.87 -2.32 -19.07 16 21 O -0.96 -19.28 18.18 -127.87 -2.32 -21.61 16 22 C -0.57 -7.01 7.18 72.00 0.52 -6.50 16 23 C 0.11 3.04 6.16 86.37 0.53 3.57 16 24 C -0.12 -3.10 4.96 30.67 0.15 -2.95 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.03 1.26 7.27 -2.38 -0.02 1.24 16 28 H 0.36 14.45 4.32 -92.71 -0.40 14.05 16 29 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.06 2.01 7.31 -2.39 -0.02 1.99 16 31 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.11 1.96 5.42 -2.39 -0.01 1.95 16 33 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 34 H 0.16 1.68 7.28 -2.39 -0.02 1.66 16 35 H 0.15 2.01 8.11 -2.38 -0.02 1.99 16 36 H 0.15 1.53 7.91 -2.39 -0.02 1.51 16 37 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.15 2.12 7.57 -2.39 -0.02 2.10 16 39 H 0.09 2.39 7.01 -2.39 -0.02 2.38 16 40 H 0.05 1.63 6.94 -2.39 -0.02 1.62 16 41 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -76.77 339.25 -1.14 -77.90 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.58 Total: 23.41 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.83 Total: -11.07 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -3.33 Total: -108.21 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -4.70 Total: -58.17 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.90 Total: 45.37 kcal Atomic # 16 Polarization: 31.19 SS G_CDS: -0.43 Total: 30.76 kcal Total: -76.77 -1.14 -77.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673959067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.852 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds