Wall clock time and date at job start Fri Apr 10 2020 18:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99891 * 2 1 4 4 C 1.50697 * 109.46601 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00851 * 359.97438 * 4 3 2 6 6 N 1.34787 * 119.99720 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00004 * 179.97438 * 6 4 3 8 8 H 1.09008 * 110.88436 * 37.42922 * 7 6 4 9 9 C 1.55154 * 111.03692 * 161.33081 * 7 6 4 10 10 C 1.54325 * 102.94303 * 153.59078 * 9 7 6 11 11 H 1.09004 * 109.88239 * 97.22707 * 10 9 7 12 12 C 1.53000 * 109.88413 * 218.23776 * 10 9 7 13 13 N 1.47290 * 107.30599 * 337.81911 * 10 9 7 14 14 C 1.34774 * 125.79121 * 178.92556 * 13 10 9 15 15 O 1.21280 * 120.00501 * 0.02562 * 14 13 10 16 16 C 1.50698 * 119.99753 * 180.02562 * 14 13 10 17 17 S 1.81001 * 109.47236 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00467 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99270 * 359.97438 * 18 17 16 20 20 C 1.38791 * 120.00497 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00385 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47199 * 59.99715 * 22 20 18 24 24 H 1.48495 * 109.47418 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47101 * 299.99924 * 22 20 18 26 26 C 1.47425 * 108.55742 * 358.92448 * 13 10 9 27 27 H 1.08996 * 109.47251 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47108 * 299.99862 * 1 2 3 29 29 H 1.09000 * 109.47169 * 59.99784 * 1 2 3 30 30 H 1.08998 * 109.46921 * 60.00077 * 3 2 1 31 31 H 1.08999 * 109.47025 * 299.99754 * 3 2 1 32 32 H 0.96999 * 119.99460 * 0.02562 * 6 4 3 33 33 H 1.09002 * 110.72290 * 271.95765 * 9 7 6 34 34 H 1.08994 * 110.71922 * 35.05233 * 9 7 6 35 35 H 1.08995 * 109.47174 * 59.99535 * 12 10 9 36 36 H 1.08995 * 109.47106 * 180.02562 * 12 10 9 37 37 H 1.09007 * 109.46933 * 300.00018 * 12 10 9 38 38 H 1.09001 * 109.47204 * 299.99785 * 16 14 13 39 39 H 1.09000 * 109.47543 * 59.99762 * 16 14 13 40 40 H 0.97007 * 120.00036 * 180.02562 * 21 20 18 41 41 H 1.09002 * 110.36696 * 265.26054 * 26 13 10 42 42 H 1.08995 * 110.36608 * 143.04891 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0013 8 1 6.0604 1.3438 -0.6199 9 6 6.4004 3.5045 -0.4656 10 6 7.7824 3.4572 0.2196 11 1 8.5301 3.0819 -0.4792 12 6 8.1741 4.8566 0.6983 13 7 7.6701 2.5444 1.3701 14 6 8.6665 2.2161 2.2160 15 8 9.7735 2.6868 2.0610 16 6 8.4053 1.2642 3.3547 17 16 9.9285 1.0249 4.3027 18 6 9.3506 -0.0965 5.5328 19 1 8.3199 -0.4192 5.5277 20 6 10.2194 -0.5642 6.5088 21 7 11.4752 -0.1697 6.5158 22 14 9.6068 -1.7535 7.8124 23 1 9.1034 -2.9883 7.1587 24 1 10.7218 -2.0993 8.7302 25 1 8.5083 -1.1190 8.5844 26 6 6.2835 2.0488 1.4421 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8593 3.1725 -0.0009 33 1 6.5081 3.5222 -1.5501 34 1 5.8261 4.3649 -0.1224 35 1 7.4319 5.2182 1.4100 36 1 9.1507 4.8156 1.1804 37 1 8.2188 5.5333 -0.1552 38 1 7.6339 1.6778 4.0043 39 1 8.0705 0.3059 2.9577 40 1 12.0826 -0.4968 7.1977 41 1 5.6970 2.6607 2.1274 42 1 6.2694 1.0060 1.7589 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680499427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:47 Heat of formation + Delta-G solvation = -139.906888 kcal Electronic energy + Delta-G solvation = -23985.249967 eV Core-core repulsion = 20283.759853 eV Total energy + Delta-G solvation = -3701.490114 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55298 -40.60591 -38.83460 -38.15060 -35.45544 -34.62425 -33.38231 -31.58164 -30.30865 -29.26410 -27.70285 -26.92932 -26.68375 -23.81497 -22.31545 -21.73616 -20.36644 -19.52528 -18.58606 -18.08397 -17.87594 -17.34702 -17.12746 -16.91463 -16.53959 -16.34297 -15.99928 -15.62329 -15.45130 -15.01845 -14.61758 -14.54612 -14.38008 -14.15408 -14.00957 -13.61645 -13.36109 -13.21120 -13.10418 -12.99459 -12.89688 -12.64397 -12.53854 -12.32613 -12.05257 -11.84476 -11.77849 -11.16472 -10.99681 -10.91057 -10.72785 -10.35614 -10.26787 -9.76103 -8.72094 -8.38033 -6.17213 1.18277 1.39524 1.41493 1.48593 1.51883 1.54700 1.71152 2.11466 2.24106 2.95669 3.08428 3.23105 3.36675 3.47113 3.77398 3.81175 3.92907 4.08241 4.16935 4.18892 4.25434 4.33323 4.35874 4.39322 4.52384 4.56109 4.60945 4.70266 4.72555 4.87854 4.90594 4.91107 5.11595 5.26476 5.37316 5.39289 5.46956 6.07713 6.15844 6.29569 6.54452 7.02629 7.06846 7.22753 8.71135 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.003245 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.438750 B = 8625.523349 C =10907.091930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.044 3.956 4 C 0.507 3.493 5 O -0.575 6.575 6 N -0.697 5.697 7 C 0.143 3.857 8 H 0.085 0.915 9 C -0.108 4.108 10 C 0.126 3.874 11 H 0.068 0.932 12 C -0.156 4.156 13 N -0.612 5.612 14 C 0.550 3.450 15 O -0.555 6.555 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.551 4.551 19 H 0.078 0.922 20 C 0.015 3.985 21 N -0.909 5.909 22 Si 0.999 3.001 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.261 1.261 26 C 0.084 3.916 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.426 0.574 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.273 0.727 41 H 0.091 0.909 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.968 11.190 -17.344 33.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.035 4.035 4 C 0.294 3.706 5 O -0.452 6.452 6 N -0.352 5.352 7 C 0.036 3.964 8 H 0.104 0.896 9 C -0.146 4.146 10 C 0.023 3.977 11 H 0.086 0.914 12 C -0.214 4.214 13 N -0.347 5.347 14 C 0.338 3.662 15 O -0.433 6.433 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.698 4.698 19 H 0.096 0.904 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.820 3.180 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.185 1.185 26 C -0.040 4.040 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.266 0.734 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.651 10.922 -17.464 31.363 hybrid contribution -1.199 -0.973 1.233 1.976 sum -24.850 9.949 -16.231 31.304 Atomic orbital electron populations 1.23011 0.78296 1.03961 1.01747 1.87981 1.22135 1.27174 1.95831 1.22425 0.88556 0.86709 1.05771 1.21092 0.90435 0.84040 0.74991 1.90775 1.75781 1.28933 1.49748 1.45497 1.04924 1.09572 1.75207 1.21823 0.80253 1.00115 0.94200 0.89643 1.22982 0.92434 0.96535 1.02644 1.21856 0.99127 0.90185 0.86487 0.91406 1.22084 1.01272 0.95411 1.02658 1.48461 1.09957 1.46838 1.29487 1.19613 0.83436 0.80965 0.82203 1.90675 1.24047 1.55031 1.73553 1.23334 1.04029 1.01473 0.98646 1.85446 1.12533 1.60675 1.32763 1.23144 0.99583 1.31856 1.15255 0.90367 1.26127 0.94588 0.98352 0.99891 1.70170 1.05273 1.43919 1.35198 0.85004 0.78141 0.77881 0.76976 1.18918 1.19943 1.18507 1.22845 0.81636 1.00021 0.99493 0.89328 0.92262 0.91838 0.87090 0.86525 0.73443 0.86485 0.86332 0.91650 0.94921 0.88526 0.87930 0.88691 0.91831 0.89116 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -7.53 10.24 -129.94 -1.33 -8.86 16 3 C 0.04 0.44 6.42 71.23 0.46 0.90 16 4 C 0.51 8.92 7.91 87.65 0.69 9.61 16 5 O -0.57 -17.70 16.24 16.01 0.26 -17.44 16 6 N -0.70 -7.07 5.23 -435.96 -2.28 -9.35 16 7 C 0.14 2.24 3.31 46.38 0.15 2.39 16 8 H 0.09 1.79 7.73 -2.38 -0.02 1.78 16 9 C -0.11 -1.07 6.10 31.78 0.19 -0.87 16 10 C 0.13 2.64 3.46 45.29 0.16 2.79 16 11 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 12 C -0.16 -3.20 9.11 71.98 0.66 -2.54 16 13 N -0.61 -17.63 3.08 -787.42 -2.42 -20.05 16 14 C 0.55 22.36 7.67 87.66 0.67 23.03 16 15 O -0.56 -26.94 14.94 -3.03 -0.05 -26.98 16 16 C -0.12 -5.48 5.16 71.24 0.37 -5.11 16 17 S -0.14 -8.25 20.57 -56.49 -1.16 -9.41 16 18 C -0.55 -32.96 9.50 67.95 0.65 -32.31 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.02 0.91 5.49 84.86 0.47 1.37 16 21 N -0.91 -57.20 13.22 21.65 0.29 -56.91 16 22 Si 1.00 45.12 29.55 68.60 2.03 47.15 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 26 C 0.08 1.90 6.38 86.85 0.55 2.45 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.43 0.41 8.52 -92.71 -0.79 -0.38 16 33 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 0.46 7.71 -2.39 -0.02 0.44 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.03 0.96 6.93 -2.39 -0.02 0.95 16 37 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 39 H 0.09 4.06 7.85 -2.40 -0.02 4.04 16 40 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.70 7.47 -2.39 -0.02 1.68 16 Total: -1.00 -92.30 367.80 1.83 -90.47 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.23 Total: 8.21 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.26 Total: 3.19 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -4.42 Total: -86.32 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -1.12 Total: -53.28 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -92.30 1.83 -90.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680499427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.438 kcal (2) G-P(sol) polarization free energy of solvation -92.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds