Wall clock time and date at job start Fri Apr 10 2020 18:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.46969 * 2 1 4 4 C 1.42905 * 113.99496 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46586 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00136 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99336 * 180.02562 * 5 4 3 8 8 C 1.47809 * 134.58755 * 5.16175 * 7 5 4 9 9 C 1.53953 * 86.16039 * 155.42893 * 8 7 5 10 10 C 1.47589 * 134.48546 * 185.11974 * 7 5 4 11 11 H 1.09000 * 113.76749 * 90.21520 * 10 7 5 12 12 C 1.52993 * 113.76937 * 318.92701 * 10 7 5 13 13 N 1.46500 * 109.47507 * 80.66189 * 12 10 7 14 14 C 1.34770 * 120.00383 * 185.23720 * 13 12 10 15 15 O 1.21281 * 119.99946 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99880 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46886 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99906 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99885 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99912 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00241 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99924 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47486 * 89.99797 * 22 20 18 24 24 H 1.48502 * 109.47376 * 209.99719 * 22 20 18 25 25 H 1.48504 * 109.47123 * 329.99527 * 22 20 18 26 26 H 1.09000 * 109.46672 * 59.99999 * 1 2 3 27 27 H 1.09000 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46982 * 299.99849 * 1 2 3 29 29 H 1.09000 * 109.46982 * 240.00151 * 2 1 3 30 30 H 1.09007 * 109.46997 * 120.00264 * 2 1 3 31 31 H 1.08995 * 109.47386 * 60.00061 * 4 3 2 32 32 H 1.08998 * 109.47424 * 299.99765 * 4 3 2 33 33 H 1.08996 * 113.83380 * 41.09666 * 8 7 5 34 34 H 1.08997 * 113.76931 * 269.74330 * 8 7 5 35 35 H 1.09006 * 113.73886 * 269.17210 * 9 8 7 36 36 H 1.08993 * 113.84082 * 137.87514 * 9 8 7 37 37 H 1.09004 * 109.47432 * 320.65902 * 12 10 7 38 38 H 1.08998 * 109.47309 * 200.66195 * 12 10 7 39 39 H 0.97007 * 119.99445 * 5.24395 * 13 12 10 40 40 H 1.08998 * 109.47628 * 60.00042 * 16 14 13 41 41 H 1.09005 * 109.47025 * 299.99273 * 16 14 13 42 42 H 0.96997 * 120.00144 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9610 3.7728 0.0006 7 7 5.1210 3.2662 0.0013 8 6 6.3953 2.5232 -0.0938 9 6 6.9986 3.8323 -0.6346 10 6 5.8474 4.5475 0.0957 11 1 6.0900 4.8406 1.1171 12 6 5.2110 5.6783 -0.7148 13 7 4.0909 6.2483 0.0380 14 6 3.3108 7.1918 -0.5255 15 8 3.5358 7.5688 -1.6561 16 6 2.1590 7.7785 0.2492 17 16 1.3099 9.0088 -0.7714 18 6 0.0470 9.5158 0.3478 19 1 -0.0130 9.0727 1.3309 20 6 -0.8714 10.4837 -0.0344 21 7 -0.7986 11.0234 -1.2327 22 14 -2.2099 11.0216 1.1524 23 1 -1.7201 12.1628 1.9668 24 1 -3.4117 11.4398 0.3867 25 1 -2.5621 9.8900 2.0472 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8341 0.9764 -0.8891 32 1 3.8334 0.9766 0.8908 33 1 6.3794 1.7129 -0.8225 34 1 6.7997 2.2192 0.8716 35 1 6.9521 3.9214 -1.7200 36 1 7.9845 4.0628 -0.2312 37 1 4.8479 5.2850 -1.6644 38 1 5.9540 6.4532 -0.9029 39 1 3.9107 5.9465 0.9422 40 1 2.5350 8.2542 1.1549 41 1 1.4607 6.9858 0.5181 42 1 -1.4402 11.7001 -1.4997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689507735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:18 Heat of formation + Delta-G solvation = -78.956052 kcal Electronic energy + Delta-G solvation = -23935.975455 eV Core-core repulsion = 20237.128368 eV Total energy + Delta-G solvation = -3698.847087 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78229 -38.88529 -38.47488 -37.29209 -34.19162 -32.31387 -31.90530 -30.72854 -29.76982 -27.67348 -27.26814 -25.36251 -23.41719 -23.08798 -22.27873 -20.20075 -19.15865 -17.79389 -17.42332 -16.98456 -16.83165 -16.37069 -16.11813 -15.91254 -15.03809 -14.94868 -14.69959 -14.50029 -14.13801 -13.80670 -13.35285 -13.20350 -12.98168 -12.78405 -12.69992 -12.60135 -12.48979 -12.31432 -11.90574 -11.69300 -11.57121 -11.50742 -11.35800 -10.96951 -10.90489 -10.65351 -10.02654 -9.79619 -9.68728 -9.17510 -9.03561 -8.95641 -8.61867 -8.08430 -6.35192 -6.10192 -3.78847 2.16020 2.45201 3.18307 3.30244 3.34003 3.36947 3.39949 3.46621 3.82620 4.04942 4.16419 4.32136 4.45863 4.62519 4.67420 4.70104 4.80360 4.86474 4.88380 4.89834 4.93450 5.02719 5.19145 5.24613 5.28080 5.36751 5.39027 5.58541 5.63738 5.69246 5.86200 5.90411 6.00365 6.12241 6.37757 6.75860 6.83592 7.36569 7.71302 7.94052 8.01664 8.47340 8.86200 9.34983 10.97405 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.003181 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.179239 B = 8800.224262 C =10729.110441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.053 3.947 5 C 0.528 3.472 6 O -0.489 6.489 7 N -0.649 5.649 8 C 0.099 3.901 9 C -0.142 4.142 10 C 0.127 3.873 11 H 0.101 0.899 12 C 0.124 3.876 13 N -0.723 5.723 14 C 0.539 3.461 15 O -0.527 6.527 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.532 4.532 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.869 5.869 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.398 0.602 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.265 -25.709 5.345 31.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.280 6.280 4 C -0.027 4.027 5 C 0.316 3.684 6 O -0.361 6.361 7 N -0.390 5.390 8 C -0.023 4.023 9 C -0.181 4.181 10 C 0.024 3.976 11 H 0.119 0.881 12 C -0.002 4.002 13 N -0.377 5.377 14 C 0.325 3.675 15 O -0.402 6.402 16 C -0.300 4.300 17 S 0.164 5.836 18 C -0.680 4.680 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.231 0.769 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.690 -24.390 3.318 29.740 hybrid contribution -0.991 -0.718 2.578 2.854 sum 15.699 -25.108 5.896 30.194 Atomic orbital electron populations 1.21742 0.93167 1.02227 1.03857 1.22547 0.96226 0.83200 0.99933 1.88077 1.18168 1.26435 1.95351 1.22067 0.84184 0.94401 1.02053 1.19968 0.80866 0.90600 0.76978 1.90860 1.47615 1.51373 1.46206 1.50219 1.03654 1.10106 1.74988 1.23216 0.81488 0.96547 1.01093 1.23547 0.97890 0.94555 1.02091 1.23134 0.88966 0.85596 0.99930 0.88149 1.21365 0.89257 0.94050 0.95488 1.45724 1.31484 1.41869 1.18582 1.20162 0.82320 0.78251 0.86770 1.90670 1.70684 1.60389 1.18482 1.23489 0.98644 1.04261 1.03634 1.85309 1.33754 1.43921 1.20573 1.22891 1.16058 1.26737 1.02341 0.91004 1.24981 0.97499 0.95420 0.95744 1.70027 1.35961 1.26311 1.18180 0.86178 0.80328 0.78847 0.80201 1.20338 1.20804 1.19704 0.91441 0.90972 0.91531 0.93278 0.93334 0.90740 0.90662 0.89849 0.89462 0.88283 0.89018 0.91032 0.90575 0.76863 0.89590 0.89095 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.36 -4.53 9.88 -55.14 -0.54 -5.07 16 4 C 0.05 0.49 6.18 36.01 0.22 0.71 16 5 C 0.53 6.58 8.05 -10.98 -0.09 6.49 16 6 O -0.49 -8.74 15.04 -14.35 -0.22 -8.96 16 7 N -0.65 -5.74 3.50 -170.15 -0.60 -6.34 16 8 C 0.10 0.40 8.63 -2.84 -0.02 0.38 16 9 C -0.14 -0.64 7.86 -25.79 -0.20 -0.84 16 10 C 0.13 1.03 4.29 -66.86 -0.29 0.75 16 11 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 12 C 0.12 1.58 5.22 -4.05 -0.02 1.56 16 13 N -0.72 -11.75 4.17 -60.30 -0.25 -12.01 16 14 C 0.54 11.65 7.85 -10.99 -0.09 11.56 16 15 O -0.53 -13.29 15.86 5.56 0.09 -13.20 16 16 C -0.15 -3.47 6.16 36.01 0.22 -3.25 16 17 S -0.06 -1.83 20.57 -107.50 -2.21 -4.04 16 18 C -0.53 -16.17 9.50 30.94 0.29 -15.87 16 19 H 0.07 2.08 7.80 -52.49 -0.41 1.67 16 20 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 21 N -0.87 -27.40 13.22 55.49 0.73 -26.67 16 22 Si 0.92 22.50 29.55 -169.99 -5.02 17.47 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.40 5.81 8.15 -40.82 -0.33 5.48 16 40 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 41 H 0.09 2.09 8.14 -51.91 -0.42 1.67 16 42 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -41.11 373.76 -8.46 -49.58 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.64 Total: 0.21 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 0.56 Total: 3.39 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.11 Total: -45.01 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.67 Total: -27.23 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.21 Total: -4.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.11 -8.46 -49.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689507735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.378 kcal (2) G-P(sol) polarization free energy of solvation -41.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds