Wall clock time and date at job start Fri Apr 10 2020 18:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.46969 * 2 1 4 4 C 1.42905 * 113.99496 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46586 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00136 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99336 * 180.02562 * 5 4 3 8 8 C 1.47809 * 134.58755 * 5.16175 * 7 5 4 9 9 C 1.53953 * 86.16039 * 155.42893 * 8 7 5 10 10 C 1.47589 * 134.48546 * 185.11974 * 7 5 4 11 11 H 1.09000 * 113.76749 * 90.21520 * 10 7 5 12 12 C 1.52993 * 113.76937 * 318.92701 * 10 7 5 13 13 N 1.46500 * 109.47507 * 80.66189 * 12 10 7 14 14 C 1.34770 * 120.00383 * 185.23720 * 13 12 10 15 15 O 1.21281 * 119.99946 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99880 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46886 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99906 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99885 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99912 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00241 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99924 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47486 * 89.99797 * 22 20 18 24 24 H 1.48502 * 109.47376 * 209.99719 * 22 20 18 25 25 H 1.48504 * 109.47123 * 329.99527 * 22 20 18 26 26 H 1.09000 * 109.46672 * 59.99999 * 1 2 3 27 27 H 1.09000 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46982 * 299.99849 * 1 2 3 29 29 H 1.09000 * 109.46982 * 240.00151 * 2 1 3 30 30 H 1.09007 * 109.46997 * 120.00264 * 2 1 3 31 31 H 1.08995 * 109.47386 * 60.00061 * 4 3 2 32 32 H 1.08998 * 109.47424 * 299.99765 * 4 3 2 33 33 H 1.08996 * 113.83380 * 41.09666 * 8 7 5 34 34 H 1.08997 * 113.76931 * 269.74330 * 8 7 5 35 35 H 1.09006 * 113.73886 * 269.17210 * 9 8 7 36 36 H 1.08993 * 113.84082 * 137.87514 * 9 8 7 37 37 H 1.09004 * 109.47432 * 320.65902 * 12 10 7 38 38 H 1.08998 * 109.47309 * 200.66195 * 12 10 7 39 39 H 0.97007 * 119.99445 * 5.24395 * 13 12 10 40 40 H 1.08998 * 109.47628 * 60.00042 * 16 14 13 41 41 H 1.09005 * 109.47025 * 299.99273 * 16 14 13 42 42 H 0.96997 * 120.00144 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9610 3.7728 0.0006 7 7 5.1210 3.2662 0.0013 8 6 6.3953 2.5232 -0.0938 9 6 6.9986 3.8323 -0.6346 10 6 5.8474 4.5475 0.0957 11 1 6.0900 4.8406 1.1171 12 6 5.2110 5.6783 -0.7148 13 7 4.0909 6.2483 0.0380 14 6 3.3108 7.1918 -0.5255 15 8 3.5358 7.5688 -1.6561 16 6 2.1590 7.7785 0.2492 17 16 1.3099 9.0088 -0.7714 18 6 0.0470 9.5158 0.3478 19 1 -0.0130 9.0727 1.3309 20 6 -0.8714 10.4837 -0.0344 21 7 -0.7986 11.0234 -1.2327 22 14 -2.2099 11.0216 1.1524 23 1 -1.7201 12.1628 1.9668 24 1 -3.4117 11.4398 0.3867 25 1 -2.5621 9.8900 2.0472 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8341 0.9764 -0.8891 32 1 3.8334 0.9766 0.8908 33 1 6.3794 1.7129 -0.8225 34 1 6.7997 2.2192 0.8716 35 1 6.9521 3.9214 -1.7200 36 1 7.9845 4.0628 -0.2312 37 1 4.8479 5.2850 -1.6644 38 1 5.9540 6.4532 -0.9029 39 1 3.9107 5.9465 0.9422 40 1 2.5350 8.2542 1.1549 41 1 1.4607 6.9858 0.5181 42 1 -1.4402 11.7001 -1.4997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689507735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:16 Heat of formation + Delta-G solvation = -110.326045 kcal Electronic energy + Delta-G solvation = -23937.335760 eV Core-core repulsion = 20237.128368 eV Total energy + Delta-G solvation = -3700.207392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.54357 -40.37578 -39.35169 -38.15115 -35.62829 -34.61637 -32.62196 -31.78397 -31.03747 -28.76144 -28.02350 -27.65346 -24.21649 -23.72281 -22.90603 -21.77221 -20.11294 -19.65204 -18.29851 -17.85560 -17.74495 -17.45067 -17.28853 -16.99775 -16.91039 -16.43484 -16.07160 -15.74096 -15.29497 -15.03317 -14.63409 -14.47079 -14.17078 -14.04497 -13.73640 -13.37719 -13.25586 -13.20490 -13.19857 -13.01381 -12.89549 -12.66219 -12.38579 -12.34284 -12.17140 -12.04444 -11.73801 -11.16657 -10.96488 -10.69720 -10.65513 -10.33830 -10.08603 -9.71894 -8.70522 -8.37112 -6.16203 1.23285 1.40568 1.42056 1.49904 1.57067 1.62078 1.62749 2.24606 2.32344 2.83378 2.96218 3.28693 3.44909 3.57411 3.74756 3.97508 4.02834 4.09864 4.11643 4.20074 4.22816 4.27452 4.29655 4.37481 4.44227 4.45794 4.49383 4.71026 4.73612 4.78616 4.98047 4.99674 5.04088 5.23095 5.33804 5.38021 5.45045 6.13531 6.17054 6.45705 6.67703 7.03038 7.17150 7.23520 8.72673 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.003181 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.179239 B = 8800.224262 C =10729.110441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 O -0.409 6.409 4 C 0.055 3.945 5 C 0.515 3.485 6 O -0.563 6.563 7 N -0.651 5.651 8 C 0.106 3.894 9 C -0.128 4.128 10 C 0.120 3.880 11 H 0.125 0.875 12 C 0.119 3.881 13 N -0.699 5.699 14 C 0.536 3.464 15 O -0.572 6.572 16 C -0.126 4.126 17 S -0.146 6.146 18 C -0.550 4.550 19 H 0.078 0.922 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.003 2.997 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.262 1.262 26 H 0.046 0.954 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.408 0.592 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.170 -28.100 7.621 34.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 O -0.328 6.328 4 C -0.024 4.024 5 C 0.304 3.696 6 O -0.441 6.441 7 N -0.390 5.390 8 C -0.015 4.015 9 C -0.166 4.166 10 C 0.017 3.983 11 H 0.142 0.858 12 C -0.005 4.005 13 N -0.350 5.350 14 C 0.322 3.678 15 O -0.451 6.451 16 C -0.277 4.277 17 S 0.081 5.919 18 C -0.698 4.698 19 H 0.096 0.904 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.824 3.176 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.186 1.186 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.243 0.757 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.695 -26.857 5.623 33.203 hybrid contribution -1.432 -0.086 1.854 2.344 sum 17.263 -26.943 7.477 32.861 Atomic orbital electron populations 1.21802 0.93898 1.03455 1.02097 1.22744 0.95780 0.81955 1.01824 1.88029 1.20201 1.28858 1.95750 1.22229 0.83023 0.92538 1.04630 1.20706 0.81407 0.91512 0.75932 1.90814 1.49946 1.53323 1.49999 1.50443 1.03987 1.11501 1.73034 1.23587 0.78018 0.96565 1.03286 1.23540 0.97910 0.93651 1.01478 1.23404 0.89984 0.83969 1.00947 0.85789 1.21620 0.88016 0.95966 0.94882 1.45558 1.30970 1.39584 1.18914 1.19925 0.82543 0.79256 0.86110 1.90646 1.71967 1.62342 1.20149 1.23317 0.98841 1.02357 1.03219 1.85435 1.35513 1.46806 1.24140 1.23198 1.16589 1.27554 1.02479 0.90353 1.26176 1.00132 0.94989 0.97834 1.70185 1.37182 1.26876 1.20451 0.84905 0.76451 0.78797 0.77487 1.18804 1.19875 1.18573 0.93435 0.88231 0.93030 0.91524 0.91063 0.88256 0.87415 0.87881 0.86331 0.89025 0.85661 0.94070 0.89638 0.75680 0.87322 0.89084 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.05 0.81 6.66 71.98 0.48 1.29 16 3 O -0.41 -10.15 9.88 -129.94 -1.28 -11.43 16 4 C 0.05 0.92 6.18 71.24 0.44 1.36 16 5 C 0.51 12.50 8.05 87.66 0.71 13.20 16 6 O -0.56 -20.93 15.04 16.00 0.24 -20.68 16 7 N -0.65 -10.04 3.50 -810.63 -2.84 -12.88 16 8 C 0.11 0.37 8.63 86.44 0.75 1.11 16 9 C -0.13 -0.66 7.86 31.25 0.25 -0.41 16 10 C 0.12 1.67 4.29 45.09 0.19 1.87 16 11 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 12 C 0.12 3.05 5.22 86.38 0.45 3.50 16 13 N -0.70 -23.06 4.17 -463.08 -1.93 -24.99 16 14 C 0.54 24.07 7.85 87.66 0.69 24.75 16 15 O -0.57 -30.33 15.86 -3.03 -0.05 -30.38 16 16 C -0.13 -6.05 6.16 71.24 0.44 -5.61 16 17 S -0.15 -8.98 20.57 -56.49 -1.16 -10.14 16 18 C -0.55 -34.21 9.50 67.95 0.65 -33.56 16 19 H 0.08 4.59 7.80 -2.91 -0.02 4.57 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -58.79 13.22 21.65 0.29 -58.50 16 22 Si 1.00 46.32 29.55 68.60 2.03 48.35 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.09 0.67 8.10 -2.38 -0.02 0.65 16 36 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.04 1.32 8.13 -2.38 -0.02 1.30 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.41 11.88 8.15 -92.70 -0.76 11.13 16 40 H 0.11 4.65 8.14 -2.40 -0.02 4.63 16 41 H 0.09 4.34 8.14 -2.39 -0.02 4.32 16 42 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -97.16 373.76 1.79 -95.37 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.26 Total: 18.35 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.24 Total: 6.95 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -4.48 Total: -96.37 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -1.09 Total: -62.49 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.14 kcal Total: -97.16 1.79 -95.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689507735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.958 kcal (2) G-P(sol) polarization free energy of solvation -97.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds