Wall clock time and date at job start Fri Apr 10 2020 18:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00274 * 2 1 4 4 C 1.50706 * 109.47039 * 179.97438 * 3 2 1 5 5 O 1.21273 * 119.99843 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99606 * 179.97438 * 4 3 2 7 7 C 1.47426 * 125.65099 * 359.97212 * 6 4 3 8 8 C 1.54913 * 104.83144 * 155.91746 * 7 6 4 9 9 C 1.55158 * 101.58115 * 37.01196 * 8 7 6 10 10 C 1.53001 * 110.71688 * 205.95693 * 9 8 7 11 11 N 1.46497 * 110.71889 * 82.86186 * 9 8 7 12 12 C 1.34780 * 119.99566 * 180.02562 * 11 9 8 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 9 15 15 S 1.81002 * 109.47156 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00049 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00026 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00056 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00053 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47315 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47332 * 119.99854 * 20 18 16 23 23 H 1.48499 * 109.47328 * 240.00154 * 20 18 16 24 24 C 1.47020 * 125.64867 * 180.02562 * 6 4 3 25 25 H 1.08997 * 109.47200 * 300.00683 * 1 2 3 26 26 H 1.09001 * 109.46195 * 60.00645 * 1 2 3 27 27 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47483 * 59.99357 * 3 2 1 29 29 H 1.09006 * 109.46489 * 299.99502 * 3 2 1 30 30 H 1.08997 * 110.36917 * 37.08413 * 7 6 4 31 31 H 1.08999 * 110.45924 * 274.80135 * 7 6 4 32 32 H 1.09000 * 111.00749 * 278.93461 * 8 7 6 33 33 H 1.09002 * 111.00528 * 155.08220 * 8 7 6 34 34 H 1.08997 * 109.47305 * 297.55673 * 10 9 8 35 35 H 1.08996 * 109.47178 * 57.56103 * 10 9 8 36 36 H 1.09008 * 109.46632 * 177.55553 * 10 9 8 37 37 H 0.96995 * 120.00423 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 39 39 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 40 40 H 0.97010 * 119.99946 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.88131 * 61.59398 * 24 6 4 42 42 H 1.09004 * 109.88391 * 300.43233 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5127 1.1863 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2766 2.2966 0.0002 7 6 3.7767 3.6835 -0.0014 8 6 4.9279 4.5207 0.6098 9 6 6.1759 3.8074 0.0257 10 6 7.3894 4.0078 0.9358 11 7 6.4610 4.2879 -1.3286 12 6 7.5097 3.7899 -2.0133 13 8 8.2176 2.9445 -1.5082 14 6 7.8035 4.2846 -3.4062 15 16 9.2626 3.4318 -4.0541 16 6 9.3739 4.1813 -5.6448 17 1 8.6525 4.9284 -5.9414 18 6 10.3880 3.8109 -6.5172 19 7 11.2669 2.9002 -6.1558 20 14 10.5056 4.6050 -8.2038 21 1 9.4060 5.5901 -8.3650 22 1 11.8132 5.2963 -8.3355 23 1 10.3905 3.5597 -9.2523 24 6 5.7465 2.3254 0.0002 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 2.8807 3.7646 0.6140 31 1 3.5679 4.0121 -1.0195 32 1 4.9183 4.4625 1.6982 33 1 4.8779 5.5569 0.2751 34 1 7.6297 5.0695 0.9924 35 1 7.1610 3.6332 1.9335 36 1 8.2420 3.4634 0.5296 37 1 5.8948 4.9637 -1.7327 38 1 6.9482 4.0831 -4.0512 39 1 7.9927 5.3577 -3.3784 40 1 11.9759 2.6415 -6.7653 41 1 6.1267 1.8447 -0.9012 42 1 6.1273 1.8138 0.8842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689700082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:32 Heat of formation + Delta-G solvation = -136.866262 kcal Electronic energy + Delta-G solvation = -24247.464988 eV Core-core repulsion = 20546.106726 eV Total energy + Delta-G solvation = -3701.358262 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.77524 -40.54095 -38.93049 -38.13122 -35.41529 -34.59201 -33.02650 -30.81568 -30.41843 -29.83669 -27.68498 -27.65440 -26.20370 -24.27685 -22.46779 -20.89787 -20.51899 -19.83106 -18.51970 -17.96894 -17.76747 -17.41764 -16.89388 -16.83932 -16.52740 -16.47749 -16.23269 -15.73025 -15.03461 -14.82323 -14.76050 -14.61680 -14.44534 -14.10928 -13.77899 -13.46709 -13.35496 -13.16483 -13.12018 -13.10200 -12.91630 -12.62024 -12.42755 -12.35823 -12.32185 -11.90394 -11.70723 -11.16731 -11.00262 -10.78051 -10.70774 -10.26373 -10.19866 -9.79138 -8.67037 -8.35494 -6.13276 1.26421 1.40753 1.45326 1.46604 1.55951 1.58769 1.66276 2.22874 2.27987 2.97413 2.98865 3.25793 3.33041 3.45835 3.67248 3.86297 3.97276 4.10832 4.17739 4.21767 4.31212 4.35660 4.49092 4.49878 4.57543 4.58298 4.64570 4.69595 4.78018 4.81476 4.87089 5.02362 5.09676 5.13319 5.35195 5.41114 5.56794 6.03852 6.19104 6.39995 6.55573 7.03536 7.05905 7.28903 8.73949 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017182 B = 0.002778 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.245379 B =10076.936119 C =10885.314635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.057 3.943 4 C 0.512 3.488 5 O -0.587 6.587 6 N -0.614 5.614 7 C 0.085 3.915 8 C -0.116 4.116 9 C 0.168 3.832 10 C -0.156 4.156 11 N -0.701 5.701 12 C 0.534 3.466 13 O -0.554 6.554 14 C -0.128 4.128 15 S -0.156 6.156 16 C -0.543 4.543 17 H 0.084 0.916 18 C 0.010 3.990 19 N -0.913 5.913 20 Si 1.000 3.000 21 H -0.255 1.255 22 H -0.273 1.273 23 H -0.276 1.276 24 C 0.106 3.894 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.419 0.581 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.270 0.730 41 H 0.031 0.969 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.419 10.125 15.803 31.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.022 4.022 4 C 0.302 3.698 5 O -0.467 6.467 6 N -0.349 5.349 7 C -0.035 4.035 8 C -0.154 4.154 9 C 0.081 3.919 10 C -0.214 4.214 11 N -0.356 5.356 12 C 0.320 3.680 13 O -0.431 6.431 14 C -0.280 4.280 15 S 0.071 5.929 16 C -0.691 4.691 17 H 0.102 0.898 18 C -0.194 4.194 19 N -0.549 5.549 20 Si 0.822 3.178 21 H -0.178 1.178 22 H -0.199 1.199 23 H -0.202 1.202 24 C -0.019 4.019 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.137 0.863 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.258 0.742 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.812 7.821 16.611 30.069 hybrid contribution -0.271 0.968 -1.945 2.189 sum -24.083 8.789 14.667 29.536 Atomic orbital electron populations 1.23047 0.77944 1.04160 1.01893 1.87981 1.22472 1.26983 1.95824 1.22330 0.87601 0.86725 1.05529 1.20945 0.90457 0.82676 0.75747 1.90732 1.75992 1.28635 1.51303 1.48531 1.06241 1.07455 1.72667 1.22882 0.99144 0.78107 1.03381 1.23215 0.88832 1.00582 1.02758 1.21277 0.97192 0.91102 0.82377 1.22077 0.97090 1.03302 0.98936 1.45752 1.30082 1.44047 1.15751 1.20045 0.80395 0.80933 0.86595 1.90692 1.49698 1.32814 1.69921 1.23372 1.03186 1.05106 0.96297 1.85651 1.33651 1.55967 1.17618 1.23229 1.17485 1.27480 1.00904 0.89820 1.26163 0.94135 0.95482 1.03630 1.70200 1.15640 1.30956 1.38128 0.84887 0.78724 0.78139 0.76078 1.17804 1.19870 1.20170 1.22224 0.80566 0.98337 1.00737 0.91605 0.92169 0.89049 0.86312 0.87370 0.86120 0.89270 0.86811 0.85250 0.90117 0.89815 0.93717 0.74233 0.87713 0.86857 0.92059 0.95065 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -9.11 10.24 -129.94 -1.33 -10.44 16 3 C 0.06 0.88 5.42 71.24 0.39 1.26 16 4 C 0.51 13.50 7.93 87.66 0.69 14.19 16 5 O -0.59 -23.45 16.83 16.03 0.27 -23.18 16 6 N -0.61 -12.75 3.33 -811.80 -2.70 -15.45 16 7 C 0.09 0.66 6.67 86.86 0.58 1.24 16 8 C -0.12 -0.79 6.07 31.99 0.19 -0.59 16 9 C 0.17 3.21 0.81 4.79 0.00 3.21 16 10 C -0.16 -3.30 8.38 71.98 0.60 -2.70 16 11 N -0.70 -15.29 5.14 -417.56 -2.15 -17.43 16 12 C 0.53 18.81 7.06 87.66 0.62 19.43 16 13 O -0.55 -24.97 12.86 -3.03 -0.04 -25.01 16 14 C -0.13 -4.94 6.16 71.24 0.44 -4.51 16 15 S -0.16 -8.71 20.57 -56.49 -1.16 -9.87 16 16 C -0.54 -31.05 9.50 67.96 0.65 -30.41 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.60 5.49 84.86 0.47 1.06 16 19 N -0.91 -56.80 13.22 21.65 0.29 -56.52 16 20 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 21 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.11 2.90 5.82 86.73 0.51 3.40 16 25 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.12 0.83 7.85 -2.39 -0.02 0.81 16 29 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.12 0.05 7.48 -2.39 -0.02 0.03 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.48 8.05 -2.39 -0.02 0.46 16 33 H 0.13 0.11 8.07 -2.39 -0.02 0.09 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 36 H 0.04 1.39 6.03 -2.38 -0.01 1.38 16 37 H 0.42 5.62 8.49 -92.71 -0.79 4.83 16 38 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 40 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 41 H 0.03 1.18 6.90 -2.39 -0.02 1.16 16 42 H 0.06 1.85 7.81 -2.39 -0.02 1.84 16 Total: -1.00 -95.10 363.43 1.83 -93.27 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.24 Total: 11.68 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.38 Total: 7.11 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -4.56 Total: -89.41 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -1.10 Total: -58.63 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -95.10 1.83 -93.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689700082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.598 kcal (2) G-P(sol) polarization free energy of solvation -95.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds