Wall clock time and date at job start Fri Apr 10 2020 18:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 120.00207 * 2 1 4 4 C 1.53005 * 109.46690 * 271.63386 * 3 2 1 5 5 H 1.08998 * 112.96478 * 294.36460 * 4 3 2 6 6 C 1.53948 * 113.76677 * 66.04265 * 4 3 2 7 7 C 1.53945 * 86.28821 * 137.90554 * 6 4 3 8 8 N 1.47577 * 86.11948 * 336.39266 * 7 6 4 9 9 C 1.36932 * 134.49462 * 204.64371 * 8 7 6 10 10 H 1.07997 * 120.00353 * 184.91603 * 9 8 7 11 11 C 1.38819 * 120.00006 * 4.91827 * 9 8 7 12 12 N 1.31615 * 119.99864 * 5.14134 * 11 9 8 13 13 Si 1.86798 * 119.99892 * 185.13714 * 11 9 8 14 14 H 1.48503 * 109.47447 * 5.00187 * 13 11 9 15 15 H 1.48507 * 109.46877 * 125.00342 * 13 11 9 16 16 H 1.48498 * 109.47022 * 244.99917 * 13 11 9 17 17 C 1.34773 * 120.00276 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00236 * 175.32507 * 17 2 1 19 19 C 1.50702 * 119.99576 * 355.04623 * 17 2 1 20 20 C 1.53003 * 109.46675 * 185.13917 * 19 17 2 21 21 C 1.53046 * 113.14956 * 274.79556 * 20 19 17 22 22 S 1.81503 * 89.86200 * 211.87158 * 21 20 19 23 23 O 1.42099 * 112.71732 * 280.43338 * 22 21 20 24 24 O 1.42098 * 112.85761 * 136.68773 * 22 21 20 25 25 C 1.53045 * 113.14819 * 174.37231 * 20 19 17 26 26 H 1.09001 * 109.47340 * 270.00488 * 1 2 3 27 27 H 1.08998 * 109.46962 * 30.00459 * 1 2 3 28 28 H 1.08996 * 109.47027 * 150.00073 * 1 2 3 29 29 H 1.09005 * 109.46966 * 31.62689 * 3 2 1 30 30 H 1.08991 * 109.47228 * 151.63513 * 3 2 1 31 31 H 1.08997 * 113.73667 * 252.24771 * 6 4 3 32 32 H 1.08998 * 113.74463 * 23.45687 * 6 4 3 33 33 H 1.09003 * 113.76760 * 90.69142 * 7 6 4 34 34 H 1.08997 * 113.77525 * 221.97448 * 7 6 4 35 35 H 0.96995 * 120.00072 * 180.02562 * 12 11 9 36 36 H 1.08996 * 109.47439 * 305.13415 * 19 17 2 37 37 H 1.08998 * 109.46819 * 65.14515 * 19 17 2 38 38 H 1.08992 * 112.50013 * 44.58697 * 20 19 17 39 39 H 1.08995 * 113.15156 * 327.11787 * 21 20 19 40 40 H 1.08998 * 113.14276 * 96.60326 * 21 20 19 41 41 H 1.08998 * 113.14978 * 263.40443 * 25 20 19 42 42 H 1.08997 * 113.15076 * 32.84914 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4169 1.7309 -1.4420 5 1 3.0707 1.0663 -2.0068 6 6 1.1169 2.0975 -2.1806 7 6 1.8929 3.3034 -2.7404 8 7 2.7693 3.1590 -1.5618 9 6 3.5826 4.0088 -0.8609 10 1 4.1966 3.6289 -0.0578 11 6 3.6180 5.3588 -1.1825 12 7 2.7971 5.8403 -2.0917 13 14 4.8305 6.4918 -0.3250 14 1 5.7163 5.6915 0.5584 15 1 5.6517 7.1980 -1.3410 16 1 4.0874 7.4867 0.4893 17 6 2.1389 -1.1671 0.0005 18 8 3.3487 -1.1689 -0.0851 19 6 1.3896 -2.4697 0.1138 20 6 2.3877 -3.6246 0.2192 21 6 2.8734 -4.1262 -1.1427 22 16 3.0328 -5.8019 -0.4639 23 8 4.2226 -5.9765 0.2931 24 8 2.5358 -6.8027 -1.3418 25 6 1.7182 -4.9768 0.4756 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6214 2.0210 0.5389 30 1 3.1623 1.1313 0.4882 31 1 0.8246 1.3727 -2.9404 32 1 0.2970 2.3711 -1.5165 33 1 2.3938 3.1023 -3.6875 34 1 1.3178 4.2292 -2.7518 35 1 2.8220 6.7835 -2.3167 36 1 0.7606 -2.4509 1.0038 37 1 0.7659 -2.6080 -0.7693 38 1 3.2012 -3.4109 0.9123 39 1 2.1158 -4.0501 -1.9226 40 1 3.8273 -3.6928 -1.4435 41 1 1.7051 -5.2555 1.5293 42 1 0.7373 -5.0647 0.0088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691048288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:12 Heat of formation + Delta-G solvation = -19.658441 kcal Electronic energy + Delta-G solvation = -24636.838085 eV Core-core repulsion = 20940.562335 eV Total energy + Delta-G solvation = -3696.275750 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.08083 -38.13106 -37.62778 -37.00255 -36.30622 -35.17597 -32.16832 -30.23435 -28.11211 -27.81474 -26.99588 -26.15044 -23.36613 -22.72483 -21.17790 -19.33916 -19.16668 -18.89354 -17.19810 -16.88428 -16.77499 -16.58318 -16.33166 -15.91932 -15.58977 -15.08849 -14.56356 -14.26749 -13.77360 -13.57622 -13.37537 -13.18156 -13.12657 -12.63311 -12.57861 -12.54470 -12.51582 -12.26985 -12.13110 -11.62571 -11.50085 -11.43928 -11.03293 -10.91999 -10.84318 -10.71252 -10.61985 -10.44966 -9.85920 -9.78155 -9.66487 -9.51387 -8.80689 -8.38328 -6.85496 -5.75026 -3.08906 -0.16715 1.67634 2.70534 3.06002 3.36243 3.39049 3.45606 3.47645 3.67259 3.82377 4.27243 4.46296 4.52399 4.69582 4.77419 4.87807 5.01202 5.08984 5.17488 5.24767 5.26826 5.35053 5.47329 5.51887 5.53963 5.68047 5.73116 5.81651 5.95678 6.16898 6.27046 6.40142 6.57410 6.69725 6.80106 7.25124 7.43823 7.54277 7.60898 8.01208 8.28163 9.05831 9.72498 10.61638 11.40437 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.002655 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.877512 B =10541.865786 C =10934.191144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.117 3.883 4 C 0.131 3.869 5 H 0.046 0.954 6 C -0.158 4.158 7 C 0.152 3.848 8 N -0.602 5.602 9 C -0.221 4.221 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.507 3.493 18 O -0.536 6.536 19 C -0.117 4.117 20 C -0.052 4.052 21 C -0.591 4.591 22 S 2.406 3.594 23 O -0.914 6.914 24 O -0.931 6.931 25 C -0.601 4.601 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.021 0.979 34 H 0.081 0.919 35 H 0.252 0.748 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 -21.355 4.311 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C -0.006 4.006 4 C 0.023 3.977 5 H 0.064 0.936 6 C -0.196 4.196 7 C 0.027 3.973 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.294 3.706 18 O -0.413 6.413 19 C -0.158 4.158 20 C -0.073 4.073 21 C -0.721 4.721 22 S 2.588 3.412 23 O -0.911 6.911 24 O -0.928 6.928 25 C -0.729 4.729 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.776 -22.082 4.236 23.791 hybrid contribution 0.043 1.835 0.416 1.882 sum -7.733 -20.247 4.651 22.167 Atomic orbital electron populations 1.21900 0.79835 1.03607 1.01603 1.47854 1.06889 1.06435 1.72890 1.21797 0.97101 0.82713 0.98996 1.22521 0.93540 0.88309 0.93323 0.93634 1.23790 0.96990 0.99445 0.99368 1.22301 0.89877 0.95996 0.89155 1.45982 1.53139 1.03077 1.30614 1.19055 1.16425 0.87980 1.11408 0.90395 1.24760 0.99723 0.96519 0.99422 1.69829 1.38847 1.13001 1.34973 0.86091 0.80573 0.80825 0.78554 1.20435 1.21741 1.21757 1.20519 0.88102 0.85247 0.76755 1.90719 1.14134 1.87150 1.49286 1.21528 0.98139 0.91397 1.04733 1.21219 0.98383 0.92543 0.95150 1.31013 1.11285 1.23339 1.06415 1.08489 0.77338 0.76960 0.78396 1.93726 1.42203 1.86124 1.69083 1.93636 1.80360 1.56364 1.62449 1.31066 1.18094 1.08501 1.15238 0.92782 0.90058 0.91445 0.90002 0.90453 0.93520 0.90881 0.96104 0.90118 0.93786 0.88171 0.88185 0.85983 0.84016 0.84985 0.85617 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.89 59.85 0.59 1.27 16 2 N -0.61 -8.12 2.82 -181.57 -0.51 -8.63 16 3 C 0.12 2.07 5.35 -4.03 -0.02 2.05 16 4 C 0.13 2.68 4.58 -66.86 -0.31 2.37 16 5 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.16 -2.87 6.83 -25.80 -0.18 -3.05 16 7 C 0.15 3.57 7.72 -2.98 -0.02 3.54 16 8 N -0.60 -15.32 3.57 -170.74 -0.61 -15.93 16 9 C -0.22 -6.19 10.50 -15.06 -0.16 -6.35 16 10 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -27.15 11.29 55.49 0.63 -26.52 16 13 Si 0.91 22.28 29.56 -169.99 -5.02 17.25 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 C 0.51 6.73 7.65 -10.99 -0.08 6.65 16 18 O -0.54 -9.40 15.41 5.56 0.09 -9.31 16 19 C -0.12 -0.92 4.05 -27.88 -0.11 -1.04 16 20 C -0.05 -0.40 2.77 -90.57 -0.25 -0.65 16 21 C -0.59 -4.16 7.48 37.18 0.28 -3.88 16 22 S 2.41 16.14 7.55 -107.50 -0.81 15.32 16 23 O -0.91 -9.72 18.18 -57.31 -1.04 -10.77 16 24 O -0.93 -9.10 18.18 -57.31 -1.04 -10.14 16 25 C -0.60 -2.69 7.50 37.18 0.28 -2.41 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.81 5.81 -51.93 -0.30 0.51 16 28 H 0.07 0.43 6.62 -51.93 -0.34 0.09 16 29 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 30 H 0.08 1.53 7.44 -51.93 -0.39 1.14 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.24 6.67 -51.93 -0.35 0.90 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 2.08 6.86 -51.93 -0.36 1.72 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.10 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.10 0.58 7.26 -51.93 -0.38 0.20 16 38 H 0.12 1.10 7.77 -51.93 -0.40 0.69 16 39 H 0.14 0.74 7.94 -51.93 -0.41 0.33 16 40 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.14 0.37 8.12 -51.93 -0.42 -0.05 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -38.67 353.29 -9.35 -48.02 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.27 Total: -2.82 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.49 Total: -51.08 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -2.00 Total: -30.22 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 16.14 SS G_CDS: -0.81 Total: 15.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.67 -9.35 -48.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691048288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.365 kcal (2) G-P(sol) polarization free energy of solvation -38.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds