Wall clock time and date at job start Fri Apr 10 2020 18:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 120.00207 * 2 1 4 4 C 1.53005 * 109.46690 * 271.63386 * 3 2 1 5 5 H 1.08998 * 112.96478 * 294.36460 * 4 3 2 6 6 C 1.53948 * 113.76677 * 66.04265 * 4 3 2 7 7 C 1.53945 * 86.28821 * 137.90554 * 6 4 3 8 8 N 1.47577 * 86.11948 * 336.39266 * 7 6 4 9 9 C 1.36932 * 134.49462 * 204.64371 * 8 7 6 10 10 H 1.07997 * 120.00353 * 184.91603 * 9 8 7 11 11 C 1.38819 * 120.00006 * 4.91827 * 9 8 7 12 12 N 1.31615 * 119.99864 * 5.14134 * 11 9 8 13 13 Si 1.86798 * 119.99892 * 185.13714 * 11 9 8 14 14 H 1.48503 * 109.47447 * 5.00187 * 13 11 9 15 15 H 1.48507 * 109.46877 * 125.00342 * 13 11 9 16 16 H 1.48498 * 109.47022 * 244.99917 * 13 11 9 17 17 C 1.34773 * 120.00276 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00236 * 175.32507 * 17 2 1 19 19 C 1.50702 * 119.99576 * 355.04623 * 17 2 1 20 20 C 1.53003 * 109.46675 * 185.13917 * 19 17 2 21 21 C 1.53046 * 113.14956 * 274.79556 * 20 19 17 22 22 S 1.81503 * 89.86200 * 211.87158 * 21 20 19 23 23 O 1.42099 * 112.71732 * 280.43338 * 22 21 20 24 24 O 1.42098 * 112.85761 * 136.68773 * 22 21 20 25 25 C 1.53045 * 113.14819 * 174.37231 * 20 19 17 26 26 H 1.09001 * 109.47340 * 270.00488 * 1 2 3 27 27 H 1.08998 * 109.46962 * 30.00459 * 1 2 3 28 28 H 1.08996 * 109.47027 * 150.00073 * 1 2 3 29 29 H 1.09005 * 109.46966 * 31.62689 * 3 2 1 30 30 H 1.08991 * 109.47228 * 151.63513 * 3 2 1 31 31 H 1.08997 * 113.73667 * 252.24771 * 6 4 3 32 32 H 1.08998 * 113.74463 * 23.45687 * 6 4 3 33 33 H 1.09003 * 113.76760 * 90.69142 * 7 6 4 34 34 H 1.08997 * 113.77525 * 221.97448 * 7 6 4 35 35 H 0.96995 * 120.00072 * 180.02562 * 12 11 9 36 36 H 1.08996 * 109.47439 * 305.13415 * 19 17 2 37 37 H 1.08998 * 109.46819 * 65.14515 * 19 17 2 38 38 H 1.08992 * 112.50013 * 44.58697 * 20 19 17 39 39 H 1.08995 * 113.15156 * 327.11787 * 21 20 19 40 40 H 1.08998 * 113.14276 * 96.60326 * 21 20 19 41 41 H 1.08998 * 113.14978 * 263.40443 * 25 20 19 42 42 H 1.08997 * 113.15076 * 32.84914 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4169 1.7309 -1.4420 5 1 3.0707 1.0663 -2.0068 6 6 1.1169 2.0975 -2.1806 7 6 1.8929 3.3034 -2.7404 8 7 2.7693 3.1590 -1.5618 9 6 3.5826 4.0088 -0.8609 10 1 4.1966 3.6289 -0.0578 11 6 3.6180 5.3588 -1.1825 12 7 2.7971 5.8403 -2.0917 13 14 4.8305 6.4918 -0.3250 14 1 5.7163 5.6915 0.5584 15 1 5.6517 7.1980 -1.3410 16 1 4.0874 7.4867 0.4893 17 6 2.1389 -1.1671 0.0005 18 8 3.3487 -1.1689 -0.0851 19 6 1.3896 -2.4697 0.1138 20 6 2.3877 -3.6246 0.2192 21 6 2.8734 -4.1262 -1.1427 22 16 3.0328 -5.8019 -0.4639 23 8 4.2226 -5.9765 0.2931 24 8 2.5358 -6.8027 -1.3418 25 6 1.7182 -4.9768 0.4756 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6214 2.0210 0.5389 30 1 3.1623 1.1313 0.4882 31 1 0.8246 1.3727 -2.9404 32 1 0.2970 2.3711 -1.5165 33 1 2.3938 3.1023 -3.6875 34 1 1.3178 4.2292 -2.7518 35 1 2.8220 6.7835 -2.3167 36 1 0.7606 -2.4509 1.0038 37 1 0.7659 -2.6080 -0.7693 38 1 3.2012 -3.4109 0.9123 39 1 2.1158 -4.0501 -1.9226 40 1 3.8273 -3.6928 -1.4435 41 1 1.7051 -5.2555 1.5293 42 1 0.7373 -5.0647 0.0088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691048288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:48 Heat of formation + Delta-G solvation = -49.755993 kcal Electronic energy + Delta-G solvation = -24638.143213 eV Core-core repulsion = 20940.562335 eV Total energy + Delta-G solvation = -3697.580878 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 24.15 seconds Orbital eigenvalues (eV) -41.13508 -39.63166 -38.34849 -37.74843 -36.97424 -36.32474 -34.24056 -31.22962 -29.87546 -29.04180 -27.45701 -27.14388 -25.32309 -24.15844 -21.97182 -20.93393 -20.07290 -19.67679 -18.74258 -17.93126 -17.61700 -17.29944 -17.11405 -16.99261 -16.70865 -16.52441 -15.86501 -15.68763 -15.29276 -14.61447 -14.23527 -14.01343 -13.94035 -13.80613 -13.71296 -13.44240 -13.27622 -13.24585 -13.21559 -13.17727 -12.89471 -12.53085 -12.41256 -12.23607 -12.19284 -11.98075 -11.81033 -11.56169 -11.48185 -11.29428 -11.14039 -10.88423 -10.70985 -9.57125 -8.89108 -7.90405 -5.25185 -0.70998 1.18191 1.42483 1.43928 1.53913 1.73689 2.05099 2.47598 2.83650 3.14612 3.25822 3.28509 3.46096 3.64698 3.84423 3.95681 4.05685 4.21018 4.29309 4.34160 4.42474 4.45198 4.53796 4.63977 4.72476 4.74788 4.82315 4.89567 4.93452 4.97329 5.02534 5.07343 5.11538 5.20728 5.25325 5.49691 5.57387 5.76124 5.97141 6.55343 6.92346 7.29022 7.60617 8.56687 9.24562 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.002655 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.877512 B =10541.865786 C =10934.191144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.608 5.608 3 C 0.134 3.866 4 C 0.131 3.869 5 H 0.027 0.973 6 C -0.118 4.118 7 C 0.140 3.860 8 N -0.630 5.630 9 C -0.231 4.231 10 H 0.073 0.927 11 C -0.063 4.063 12 N -0.948 5.948 13 Si 0.973 3.027 14 H -0.271 1.271 15 H -0.294 1.294 16 H -0.285 1.285 17 C 0.496 3.504 18 O -0.591 6.591 19 C -0.107 4.107 20 C -0.068 4.068 21 C -0.596 4.596 22 S 2.419 3.581 23 O -0.962 6.962 24 O -0.963 6.963 25 C -0.559 4.559 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.009 0.991 34 H 0.054 0.946 35 H 0.248 0.752 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.166 0.834 40 H 0.110 0.890 41 H 0.148 0.852 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 -22.985 5.233 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.340 5.340 3 C 0.009 3.991 4 C 0.024 3.976 5 H 0.044 0.956 6 C -0.156 4.156 7 C 0.015 3.985 8 N -0.357 5.357 9 C -0.359 4.359 10 H 0.091 0.909 11 C -0.257 4.257 12 N -0.597 5.597 13 Si 0.801 3.199 14 H -0.196 1.196 15 H -0.221 1.221 16 H -0.212 1.212 17 C 0.287 3.713 18 O -0.472 6.472 19 C -0.148 4.148 20 C -0.089 4.089 21 C -0.725 4.725 22 S 2.606 3.394 23 O -0.960 6.960 24 O -0.960 6.960 25 C -0.690 4.690 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.117 0.883 39 H 0.184 0.816 40 H 0.128 0.872 41 H 0.166 0.834 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.840 -23.781 5.154 26.639 hybrid contribution 0.986 2.341 0.108 2.542 sum -9.854 -21.440 5.262 24.176 Atomic orbital electron populations 1.22239 0.76589 1.05205 1.03575 1.47932 1.08687 1.04721 1.72661 1.21248 0.96368 0.85105 0.96400 1.22600 0.94169 0.85568 0.95272 0.95580 1.23513 0.95812 0.96968 0.99314 1.22320 0.90377 0.97283 0.88509 1.46400 1.52985 1.05188 1.31149 1.19331 1.16438 0.88812 1.11369 0.90874 1.25540 1.01603 0.97942 1.00577 1.69998 1.40307 1.12925 1.36478 0.85101 0.78486 0.78809 0.77472 1.19591 1.22108 1.21216 1.21620 0.87819 0.86770 0.75129 1.90707 1.16922 1.87981 1.51566 1.21650 0.97844 0.87335 1.07936 1.21265 0.98537 0.94225 0.94892 1.31157 1.11117 1.22916 1.07292 1.07882 0.77231 0.76280 0.78017 1.93659 1.45468 1.86765 1.70085 1.93587 1.80714 1.57802 1.63883 1.30821 1.17680 1.04197 1.16328 0.90678 0.90785 0.87507 0.90291 0.93673 0.89930 0.88956 0.97347 0.92797 0.94246 0.84719 0.84644 0.88258 0.81596 0.87168 0.83395 0.80218 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 577. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 9.89 127.77 1.26 2.13 16 2 N -0.61 -14.70 2.82 -846.75 -2.39 -17.09 16 3 C 0.13 4.71 5.35 86.38 0.46 5.17 16 4 C 0.13 5.35 4.58 45.10 0.21 5.56 16 5 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 6 C -0.12 -4.08 6.83 31.25 0.21 -3.87 16 7 C 0.14 6.68 7.72 86.48 0.67 7.35 16 8 N -0.63 -32.80 3.57 -694.10 -2.48 -35.27 16 9 C -0.23 -13.27 10.50 84.04 0.88 -12.38 16 10 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 11 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 12 N -0.95 -57.41 11.29 21.65 0.24 -57.16 16 13 Si 0.97 46.71 29.56 68.60 2.03 48.74 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 16 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 17 C 0.50 12.14 7.65 87.66 0.67 12.81 16 18 O -0.59 -21.01 15.41 -3.02 -0.05 -21.06 16 19 C -0.11 -1.17 4.05 29.85 0.12 -1.05 16 20 C -0.07 -0.84 2.77 -10.76 -0.03 -0.87 16 21 C -0.60 -7.40 7.48 72.00 0.54 -6.86 16 22 S 2.42 29.83 7.55 -56.49 -0.43 29.40 16 23 O -0.96 -21.07 18.18 -127.87 -2.32 -23.39 16 24 O -0.96 -17.74 18.18 -127.87 -2.32 -20.06 16 25 C -0.56 -2.50 7.50 72.00 0.54 -1.96 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.13 5.81 -2.39 -0.01 1.12 16 28 H 0.11 0.62 6.62 -2.39 -0.02 0.60 16 29 H 0.08 2.80 8.08 -2.38 -0.02 2.78 16 30 H 0.04 1.86 7.44 -2.39 -0.02 1.84 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 2.87 6.67 -2.39 -0.02 2.85 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.05 2.85 6.86 -2.39 -0.02 2.83 16 35 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.13 0.64 8.05 -2.39 -0.02 0.62 16 37 H 0.14 0.61 7.26 -2.39 -0.02 0.59 16 38 H 0.10 1.72 7.77 -2.39 -0.02 1.70 16 39 H 0.17 1.17 7.94 -2.39 -0.02 1.16 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.18 -0.33 8.12 -2.39 -0.02 -0.35 16 Total: -1.00 -90.07 353.29 -0.70 -90.77 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.02 Total: 2.32 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.00 Total: 2.81 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -4.62 Total: -109.52 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -4.70 Total: -64.51 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 29.83 SS G_CDS: -0.43 Total: 29.40 kcal Total: -90.07 -0.70 -90.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691048288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.013 kcal (2) G-P(sol) polarization free energy of solvation -90.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.15 seconds