Wall clock time and date at job start Fri Apr 10 2020 18:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46500 * 120.00052 * 2 1 4 4 C 1.52997 * 109.47189 * 90.00168 * 3 2 1 5 5 N 1.46500 * 109.47189 * 179.97438 * 4 3 2 6 6 C 1.36946 * 120.00018 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99857 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00427 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99472 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46930 * 90.00090 * 10 8 6 12 12 H 1.48498 * 109.46866 * 209.99614 * 10 8 6 13 13 H 1.48498 * 109.47309 * 329.99585 * 10 8 6 14 14 C 1.34776 * 119.99865 * 180.02562 * 2 1 3 15 15 O 1.21538 * 119.99881 * 186.70634 * 14 2 1 16 16 C 1.47987 * 120.00046 * 6.70558 * 14 2 1 17 17 C 1.40420 * 119.71613 * 21.40397 * 16 14 2 18 18 C 1.36075 * 120.77786 * 180.02562 * 17 16 14 19 19 C 1.40083 * 119.86315 * 359.97438 * 18 17 16 20 20 C 1.41589 * 121.88587 * 179.97438 * 19 18 17 21 21 O 1.35269 * 120.87706 * 0.03873 * 20 19 18 22 22 N 1.32322 * 118.24789 * 180.02562 * 20 19 18 23 23 C 1.32432 * 121.53232 * 359.97438 * 22 20 19 24 24 N 1.31117 * 122.93096 * 0.02562 * 23 22 20 25 25 C 1.34118 * 120.44339 * 359.97438 * 24 23 22 26 26 C 1.38546 * 119.71762 * 201.12951 * 16 14 2 27 27 H 1.09007 * 109.47390 * 88.98364 * 1 2 3 28 28 H 1.08993 * 109.47431 * 208.98805 * 1 2 3 29 29 H 1.09004 * 109.47095 * 328.99084 * 1 2 3 30 30 H 1.09005 * 109.47388 * 330.00214 * 3 2 1 31 31 H 1.09007 * 109.47383 * 210.00087 * 3 2 1 32 32 H 1.08998 * 109.47315 * 299.99819 * 4 3 2 33 33 H 1.09003 * 109.47372 * 60.00022 * 4 3 2 34 34 H 0.97002 * 120.00560 * 359.97438 * 5 4 3 35 35 H 0.96992 * 120.00009 * 180.02562 * 9 8 6 36 36 H 1.08000 * 119.60990 * 0.02562 * 17 16 14 37 37 H 1.08007 * 120.06329 * 180.02562 * 18 17 16 38 38 H 0.96701 * 113.99966 * 90.00399 * 21 20 19 39 39 H 1.07999 * 118.53634 * 180.02562 * 23 22 20 40 40 H 1.08007 * 120.31842 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1855 2.9788 1.4425 6 6 3.5285 3.5714 2.6284 7 1 3.2582 3.1039 3.5637 8 6 4.2226 4.7736 2.6284 9 7 4.5516 5.3435 1.4886 10 14 4.6897 5.5822 4.2462 11 1 6.0260 5.0964 4.6747 12 1 4.7324 7.0560 4.0687 13 1 3.6822 5.2373 5.2812 14 6 2.1388 -1.1672 -0.0005 15 8 3.3479 -1.1709 0.1224 16 6 1.4064 -2.4444 -0.1507 17 6 0.1270 -2.4492 -0.7294 18 6 -0.5658 -3.6109 -0.8776 19 6 -0.0008 -4.8194 -0.4500 20 6 -0.6837 -6.0526 -0.5829 21 8 -1.9179 -6.1069 -1.1338 22 7 -0.0825 -7.1507 -0.1542 23 6 1.1258 -7.1127 0.3865 24 7 1.8055 -6.0014 0.5353 25 6 1.2892 -4.8302 0.1345 26 6 1.9913 -3.6257 0.2756 27 1 -0.3634 0.0182 -1.0276 28 1 -0.3634 -0.8988 0.4980 29 1 -0.3633 0.8808 0.5294 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 1.5001 1.8408 1.9563 33 1 3.0416 0.9507 1.9563 34 1 3.4287 3.3985 0.6025 35 1 5.0369 6.1833 1.4886 36 1 -0.3123 -1.5199 -1.0609 37 1 -1.5490 -3.6014 -1.3246 38 1 -1.9155 -6.2368 -2.0920 39 1 1.5713 -8.0384 0.7197 40 1 2.9776 -3.6180 0.7157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691605744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:31 Heat of formation + Delta-G solvation = 39.959011 kcal Electronic energy + Delta-G solvation = -25010.798507 eV Core-core repulsion = 21213.956763 eV Total energy + Delta-G solvation = -3796.841743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.96535 -40.29896 -38.35973 -37.64813 -36.17162 -34.52121 -33.67695 -32.21236 -31.26121 -30.64672 -28.42041 -27.08347 -25.62120 -24.79446 -23.70479 -22.72889 -21.64336 -20.50379 -19.71128 -18.57899 -18.46307 -17.25191 -16.89876 -16.67454 -16.25155 -15.60572 -15.46987 -14.81803 -14.71105 -14.51475 -14.43967 -14.20605 -13.72145 -13.53723 -13.29802 -13.05429 -13.00026 -12.82763 -12.63158 -12.32665 -11.77454 -11.34513 -11.28760 -11.03835 -10.95515 -10.90673 -10.70282 -10.13725 -10.06424 -9.77876 -9.74151 -9.65895 -8.87675 -8.86098 -8.63547 -6.94064 -5.76583 -3.05935 -0.42630 0.02424 1.22237 2.09293 2.70290 2.77424 3.01857 3.44918 3.49863 3.51307 3.54915 3.64288 3.76931 4.04346 4.15441 4.33149 4.55938 4.61317 4.68830 4.89546 4.94385 5.10243 5.15946 5.35557 5.45961 5.47151 5.58025 5.62532 5.69863 5.75093 5.79401 5.95939 6.02622 6.06434 6.45769 6.46819 6.69059 6.74320 6.86309 7.29626 7.58828 7.70450 8.04619 8.41901 9.52953 10.08377 10.43409 11.46325 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.002320 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.274491 B =12067.952556 C =12528.602466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.108 3.892 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.550 3.450 15 O -0.515 6.515 16 C -0.083 4.083 17 C -0.117 4.117 18 C -0.078 4.078 19 C -0.162 4.162 20 C 0.405 3.595 21 O -0.469 6.469 22 N -0.544 5.544 23 C 0.320 3.680 24 N -0.501 5.501 25 C 0.162 3.838 26 C -0.038 4.038 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.025 0.975 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.163 0.837 37 H 0.145 0.855 38 H 0.413 0.587 39 H 0.204 0.796 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.617 -23.234 -9.718 29.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.336 5.336 3 C -0.013 4.013 4 C 0.013 3.987 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.337 3.663 15 O -0.391 6.391 16 C -0.089 4.089 17 C -0.135 4.135 18 C -0.099 4.099 19 C -0.168 4.168 20 C 0.204 3.796 21 O -0.277 6.277 22 N -0.270 5.270 23 C 0.031 3.969 24 N -0.216 5.216 25 C 0.036 3.964 26 C -0.057 4.057 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.180 0.820 37 H 0.163 0.837 38 H 0.274 0.726 39 H 0.220 0.780 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.647 -23.861 -8.585 29.285 hybrid contribution -0.090 1.201 -0.085 1.207 sum -14.737 -22.661 -8.669 28.388 Atomic orbital electron populations 1.22420 0.79947 1.04146 1.01288 1.47661 1.06897 1.06199 1.72817 1.21797 0.97405 0.82623 0.99519 1.20914 0.95251 0.89540 0.92986 1.42203 1.67073 1.21628 1.06617 1.19205 1.29460 1.02326 0.85951 0.91187 1.24751 1.01231 0.98038 0.96961 1.69655 1.44978 1.19628 1.23958 0.86159 0.78418 0.78532 0.82901 1.21634 1.21728 1.20761 1.18229 0.87146 0.83286 0.77663 1.90857 1.13567 1.86680 1.47967 1.20151 0.94987 0.93987 0.99805 1.22119 0.93376 1.00389 0.97574 1.20810 1.00318 0.90287 0.98453 1.19743 0.96344 0.95898 1.04816 1.19650 0.83554 0.87156 0.89277 1.84626 1.21145 1.94117 1.27829 1.67901 1.11913 1.32411 1.14731 1.24770 0.85320 0.96634 0.90220 1.68775 1.36446 0.98256 1.18110 1.18765 0.90427 0.92900 0.94313 1.21206 1.00110 0.88320 0.96113 0.91731 0.90138 0.90108 0.90023 0.89510 0.96370 0.95698 0.78255 0.93469 0.82000 0.83732 0.72642 0.77987 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 8.64 59.84 0.52 1.06 16 2 N -0.60 -7.95 2.87 -182.64 -0.52 -8.47 16 3 C 0.11 1.77 5.48 -4.04 -0.02 1.75 16 4 C 0.14 2.95 6.58 -4.04 -0.03 2.92 16 5 N -0.73 -18.93 5.60 -59.91 -0.34 -19.27 16 6 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 10 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.55 8.04 7.50 -12.26 -0.09 7.95 16 15 O -0.52 -9.78 16.15 5.33 0.09 -9.69 16 16 C -0.08 -0.94 5.54 -104.97 -0.58 -1.52 16 17 C -0.12 -0.91 7.53 -39.54 -0.30 -1.21 16 18 C -0.08 -0.54 9.58 -39.67 -0.38 -0.92 16 19 C -0.16 -1.48 5.76 -106.63 -0.61 -2.09 16 20 C 0.41 3.43 7.89 -16.06 -0.13 3.31 16 21 O -0.47 -2.68 12.91 -17.50 -0.23 -2.91 16 22 N -0.54 -5.16 10.42 -14.23 -0.15 -5.30 16 23 C 0.32 2.87 12.22 -92.18 -1.13 1.75 16 24 N -0.50 -5.59 10.44 -12.65 -0.13 -5.72 16 25 C 0.16 1.82 6.61 -84.86 -0.56 1.26 16 26 C -0.04 -0.45 9.57 -38.76 -0.37 -0.82 16 27 H 0.06 0.36 6.79 -51.92 -0.35 0.01 16 28 H 0.08 0.57 5.51 -51.93 -0.29 0.29 16 29 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.09 1.57 7.52 -51.93 -0.39 1.18 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.16 0.90 3.98 -52.49 -0.21 0.69 16 37 H 0.14 0.57 7.70 -52.48 -0.40 0.16 16 38 H 0.41 0.17 9.06 45.56 0.41 0.58 16 39 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.16 2.01 7.76 -52.48 -0.41 1.61 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -37.52 343.36 -7.94 -45.46 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.60 Total: 4.85 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -3.93 Total: 5.93 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.42 Total: -66.54 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.14 Total: -12.60 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.52 -7.94 -45.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691605744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.414 kcal (2) G-P(sol) polarization free energy of solvation -37.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds