Wall clock time and date at job start Fri Apr 10 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46500 * 120.00052 * 2 1 4 4 C 1.52997 * 109.47189 * 90.00168 * 3 2 1 5 5 N 1.46500 * 109.47189 * 179.97438 * 4 3 2 6 6 C 1.36946 * 120.00018 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99857 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00427 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99472 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46930 * 90.00090 * 10 8 6 12 12 H 1.48498 * 109.46866 * 209.99614 * 10 8 6 13 13 H 1.48498 * 109.47309 * 329.99585 * 10 8 6 14 14 C 1.34776 * 119.99865 * 180.02562 * 2 1 3 15 15 O 1.21538 * 119.99881 * 186.70634 * 14 2 1 16 16 C 1.47987 * 120.00046 * 6.70558 * 14 2 1 17 17 C 1.40420 * 119.71613 * 21.40397 * 16 14 2 18 18 C 1.36075 * 120.77786 * 180.02562 * 17 16 14 19 19 C 1.40083 * 119.86315 * 359.97438 * 18 17 16 20 20 C 1.41589 * 121.88587 * 179.97438 * 19 18 17 21 21 O 1.35269 * 120.87706 * 0.03873 * 20 19 18 22 22 N 1.32322 * 118.24789 * 180.02562 * 20 19 18 23 23 C 1.32432 * 121.53232 * 359.97438 * 22 20 19 24 24 N 1.31117 * 122.93096 * 0.02562 * 23 22 20 25 25 C 1.34118 * 120.44339 * 359.97438 * 24 23 22 26 26 C 1.38546 * 119.71762 * 201.12951 * 16 14 2 27 27 H 1.09007 * 109.47390 * 88.98364 * 1 2 3 28 28 H 1.08993 * 109.47431 * 208.98805 * 1 2 3 29 29 H 1.09004 * 109.47095 * 328.99084 * 1 2 3 30 30 H 1.09005 * 109.47388 * 330.00214 * 3 2 1 31 31 H 1.09007 * 109.47383 * 210.00087 * 3 2 1 32 32 H 1.08998 * 109.47315 * 299.99819 * 4 3 2 33 33 H 1.09003 * 109.47372 * 60.00022 * 4 3 2 34 34 H 0.97002 * 120.00560 * 359.97438 * 5 4 3 35 35 H 0.96992 * 120.00009 * 180.02562 * 9 8 6 36 36 H 1.08000 * 119.60990 * 0.02562 * 17 16 14 37 37 H 1.08007 * 120.06329 * 180.02562 * 18 17 16 38 38 H 0.96701 * 113.99966 * 90.00399 * 21 20 19 39 39 H 1.07999 * 118.53634 * 180.02562 * 23 22 20 40 40 H 1.08007 * 120.31842 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1855 2.9788 1.4425 6 6 3.5285 3.5714 2.6284 7 1 3.2582 3.1039 3.5637 8 6 4.2226 4.7736 2.6284 9 7 4.5516 5.3435 1.4886 10 14 4.6897 5.5822 4.2462 11 1 6.0260 5.0964 4.6747 12 1 4.7324 7.0560 4.0687 13 1 3.6822 5.2373 5.2812 14 6 2.1388 -1.1672 -0.0005 15 8 3.3479 -1.1709 0.1224 16 6 1.4064 -2.4444 -0.1507 17 6 0.1270 -2.4492 -0.7294 18 6 -0.5658 -3.6109 -0.8776 19 6 -0.0008 -4.8194 -0.4500 20 6 -0.6837 -6.0526 -0.5829 21 8 -1.9179 -6.1069 -1.1338 22 7 -0.0825 -7.1507 -0.1542 23 6 1.1258 -7.1127 0.3865 24 7 1.8055 -6.0014 0.5353 25 6 1.2892 -4.8302 0.1345 26 6 1.9913 -3.6257 0.2756 27 1 -0.3634 0.0182 -1.0276 28 1 -0.3634 -0.8988 0.4980 29 1 -0.3633 0.8808 0.5294 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 1.5001 1.8408 1.9563 33 1 3.0416 0.9507 1.9563 34 1 3.4287 3.3985 0.6025 35 1 5.0369 6.1833 1.4886 36 1 -0.3123 -1.5199 -1.0609 37 1 -1.5490 -3.6014 -1.3246 38 1 -1.9155 -6.2368 -2.0920 39 1 1.5713 -8.0384 0.7197 40 1 2.9776 -3.6180 0.7157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691605744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:30 Heat of formation + Delta-G solvation = 9.404970 kcal Electronic energy + Delta-G solvation = -25012.123429 eV Core-core repulsion = 21213.956763 eV Total energy + Delta-G solvation = -3798.166666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.66241 -41.32233 -38.93416 -38.42376 -37.52693 -36.23326 -34.38675 -33.61013 -32.59807 -31.46518 -29.87068 -28.02041 -26.74895 -25.59484 -25.22654 -23.68879 -23.10157 -21.43731 -20.46236 -19.42325 -19.22311 -19.10631 -17.76315 -17.50693 -17.24654 -16.84957 -16.45412 -16.24295 -15.66479 -15.50701 -15.28208 -15.20407 -15.04090 -14.93888 -14.72106 -14.43160 -13.89633 -13.62371 -13.41836 -13.10027 -13.07800 -12.90506 -12.73746 -12.48490 -12.32253 -12.14165 -11.94734 -11.89314 -11.60937 -11.19880 -10.99559 -10.48116 -10.46160 -9.82572 -9.49334 -9.08109 -7.99597 -5.30199 -1.13143 -0.67115 0.50247 1.30225 1.45033 1.47991 1.55976 1.72250 2.04955 2.19479 2.53853 2.82145 2.94970 3.09025 3.28146 3.33815 3.44511 3.75245 3.89177 3.97205 4.03662 4.16268 4.21362 4.24320 4.30199 4.54198 4.56860 4.61466 4.67079 4.85387 4.95011 4.97461 5.04321 5.07982 5.14773 5.34044 5.41587 5.48513 5.79515 6.22083 6.23441 6.46061 6.92688 6.93760 7.28590 7.99944 8.25544 9.23616 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.002320 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.274491 B =12067.952556 C =12528.602466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.598 5.598 3 C 0.123 3.877 4 C 0.146 3.854 5 N -0.742 5.742 6 C -0.252 4.252 7 H 0.071 0.929 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.977 3.023 11 H -0.289 1.289 12 H -0.289 1.289 13 H -0.268 1.268 14 C 0.543 3.457 15 O -0.575 6.575 16 C -0.083 4.083 17 C -0.115 4.115 18 C -0.051 4.051 19 C -0.171 4.171 20 C 0.420 3.580 21 O -0.465 6.465 22 N -0.561 5.561 23 C 0.323 3.677 24 N -0.537 5.537 25 C 0.145 3.855 26 C -0.064 4.064 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.032 0.968 33 H -0.004 1.004 34 H 0.377 0.623 35 H 0.254 0.746 36 H 0.193 0.807 37 H 0.189 0.811 38 H 0.437 0.563 39 H 0.231 0.769 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.225 -23.963 -10.463 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.329 5.329 3 C 0.000 4.000 4 C 0.018 3.982 5 N -0.386 5.386 6 C -0.383 4.383 7 H 0.089 0.911 8 C -0.265 4.265 9 N -0.616 5.616 10 Si 0.805 3.195 11 H -0.216 1.216 12 H -0.215 1.215 13 H -0.193 1.193 14 C 0.333 3.667 15 O -0.455 6.455 16 C -0.089 4.089 17 C -0.132 4.132 18 C -0.071 4.071 19 C -0.177 4.177 20 C 0.218 3.782 21 O -0.277 6.277 22 N -0.287 5.287 23 C 0.034 3.966 24 N -0.252 5.252 25 C 0.020 3.980 26 C -0.084 4.084 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.014 0.986 34 H 0.209 0.791 35 H 0.063 0.937 36 H 0.210 0.790 37 H 0.206 0.794 38 H 0.303 0.697 39 H 0.247 0.753 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.332 -24.617 -9.352 32.086 hybrid contribution 0.919 1.299 0.109 1.595 sum -17.413 -23.319 -9.243 30.535 Atomic orbital electron populations 1.22867 0.76393 1.05301 1.04281 1.47716 1.08948 1.04483 1.71748 1.21445 0.97577 0.84757 0.96262 1.20972 0.94382 0.86763 0.96034 1.42374 1.67583 1.23012 1.05602 1.19571 1.29204 1.02588 0.86954 0.91079 1.25608 1.01607 0.98816 1.00445 1.69802 1.45877 1.19941 1.26018 0.85103 0.78058 0.77262 0.79094 1.21630 1.21504 1.19309 1.18834 0.86706 0.84686 0.76516 1.90822 1.16310 1.87600 1.50765 1.19945 0.96377 0.91635 1.00923 1.22342 0.91578 1.02184 0.97077 1.21267 1.01282 0.88605 0.95966 1.19933 0.95584 0.97342 1.04823 1.19740 0.83793 0.86599 0.88071 1.84591 1.19170 1.93970 1.30006 1.68022 1.12208 1.32843 1.15625 1.25344 0.85211 0.96977 0.89026 1.68774 1.37637 0.98949 1.19876 1.18806 0.91562 0.92474 0.95154 1.21035 0.99695 0.89616 0.98004 0.87607 0.88419 0.89704 0.87352 0.91972 0.94999 0.98589 0.79095 0.93728 0.79016 0.79393 0.69666 0.75316 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 8.64 127.77 1.10 1.78 16 2 N -0.60 -15.22 2.87 -850.04 -2.44 -17.66 16 3 C 0.12 4.03 5.48 86.38 0.47 4.50 16 4 C 0.15 6.21 6.58 86.38 0.57 6.78 16 5 N -0.74 -39.30 5.60 -343.45 -1.92 -41.22 16 6 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 7 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 8 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 9 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 10 Si 0.98 47.03 29.55 68.60 2.03 49.05 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.54 16.38 7.50 86.83 0.65 17.03 16 15 O -0.58 -23.64 16.15 -3.83 -0.06 -23.70 16 16 C -0.08 -1.85 5.54 -20.09 -0.11 -1.96 16 17 C -0.11 -1.41 7.53 22.30 0.17 -1.24 16 18 C -0.05 -0.49 9.58 22.21 0.21 -0.28 16 19 C -0.17 -2.71 5.76 -21.17 -0.12 -2.83 16 20 C 0.42 5.90 7.89 85.45 0.67 6.58 16 21 O -0.47 -3.31 12.91 -85.54 -1.10 -4.41 16 22 N -0.56 -9.59 10.42 -311.99 -3.25 -12.84 16 23 C 0.32 5.59 12.22 180.89 2.21 7.80 16 24 N -0.54 -12.30 10.44 -193.94 -2.03 -14.33 16 25 C 0.15 3.28 6.61 40.09 0.26 3.55 16 26 C -0.06 -1.62 9.57 22.80 0.22 -1.41 16 27 H 0.11 0.59 6.79 -2.38 -0.02 0.58 16 28 H 0.10 1.00 5.51 -2.39 -0.01 0.99 16 29 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 30 H 0.11 2.98 8.07 -2.38 -0.02 2.97 16 31 H 0.06 2.36 7.52 -2.38 -0.02 2.34 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.38 20.71 7.67 -92.71 -0.71 19.99 16 35 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.19 1.12 3.98 -2.91 -0.01 1.11 16 37 H 0.19 0.20 7.70 -2.91 -0.02 0.18 16 38 H 0.44 -1.72 9.06 -74.06 -0.67 -2.39 16 39 H 0.23 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.13 3.87 7.76 -2.91 -0.02 3.84 16 Total: -1.00 -86.07 343.36 -1.14 -87.21 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.26 Total: 14.70 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 7.62 Total: 22.74 kcal Atomic # 7 Polarization: -136.23 SS G_CDS: -9.36 Total: -145.59 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.17 Total: -28.11 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -86.07 -1.14 -87.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691605744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.614 kcal (2) G-P(sol) polarization free energy of solvation -86.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds