Wall clock time and date at job start Fri Apr 10 2020 18:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48504 * 109.46995 * 270.00382 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99985 * 3 2 1 6 6 H 1.48497 * 109.47381 * 150.00260 * 3 2 1 7 7 C 1.38814 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00031 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.47813 * 134.58411 * 359.94988 * 9 7 2 11 11 C 1.53953 * 86.15951 * 204.57769 * 10 9 7 12 12 C 1.47585 * 134.49052 * 180.02562 * 9 7 2 13 13 H 1.09000 * 113.76456 * 269.78088 * 12 9 7 14 14 C 1.52997 * 113.76882 * 41.06695 * 12 9 7 15 15 N 1.46496 * 109.47194 * 283.65228 * 14 12 9 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 H 1.08998 * 109.64253 * 305.42463 * 19 18 16 21 21 C 1.53879 * 109.64137 * 185.00160 * 19 18 16 22 22 C 1.55055 * 106.62187 * 192.96306 * 21 19 18 23 23 S 1.83292 * 102.56536 * 42.43263 * 22 21 19 24 24 O 1.42103 * 109.35012 * 90.18368 * 23 22 21 25 25 O 1.42091 * 109.35776 * 223.25539 * 23 22 21 26 26 C 1.54162 * 109.64859 * 65.72599 * 19 18 16 27 27 H 0.97003 * 119.99496 * 359.97438 * 1 2 3 28 28 H 1.09006 * 113.66448 * 90.27206 * 10 9 7 29 29 H 1.08995 * 113.93906 * 318.91986 * 10 9 7 30 30 H 1.08995 * 113.73733 * 222.13779 * 11 10 9 31 31 H 1.08999 * 113.73794 * 90.83137 * 11 10 9 32 32 H 1.09002 * 109.47045 * 163.65354 * 14 12 9 33 33 H 1.09001 * 109.47375 * 43.65279 * 14 12 9 34 34 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 35 35 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 36 36 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 37 37 H 1.08997 * 110.02849 * 312.25171 * 21 19 18 38 38 H 1.09001 * 110.03065 * 73.63247 * 21 19 18 39 39 H 1.08994 * 110.78986 * 160.69672 * 22 21 19 40 40 H 1.08997 * 110.79067 * 284.16487 * 22 21 19 41 41 H 1.08998 * 110.31984 * 266.66140 * 26 19 18 42 42 H 1.09002 * 110.31634 * 28.85693 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1050 -2.7601 0.0009 11 6 0.3472 -4.0865 0.6384 12 6 1.7201 -3.8101 -0.0005 13 1 1.8339 -4.2344 -0.9981 14 6 2.9022 -4.1221 0.9193 15 7 4.1448 -3.6720 0.2873 16 6 5.3229 -3.8437 0.9191 17 8 5.3543 -4.3712 2.0107 18 6 6.6011 -3.3801 0.2692 19 6 7.7832 -3.6922 1.1891 20 1 7.6075 -3.2559 2.1724 21 6 9.0743 -3.1096 0.5879 22 6 10.2530 -3.7362 1.3766 23 16 9.7434 -5.4903 1.5286 24 8 10.2387 -6.2226 0.4161 25 8 10.0067 -5.9445 2.8490 26 6 7.9459 -5.2192 1.3241 27 1 -0.4849 0.8401 0.0004 28 1 -0.5284 -2.8742 -0.9971 29 1 -0.7213 -2.1452 0.6566 30 1 -0.1575 -4.9630 0.2323 31 1 0.3589 -4.0680 1.7281 32 1 2.9524 -5.1967 1.0947 33 1 2.7697 -3.6047 1.8695 34 1 4.1197 -3.2497 -0.5856 35 1 6.5506 -2.3055 0.0938 36 1 6.7340 -3.8974 -0.6809 37 1 9.1479 -3.3750 -0.4667 38 1 9.0829 -2.0255 0.7013 39 1 11.1832 -3.6510 0.8149 40 1 10.3496 -3.2748 2.3594 41 1 7.4066 -5.5815 2.1992 42 1 7.5877 -5.7190 0.4240 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754488552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:14 Heat of formation + Delta-G solvation = -60.154143 kcal Electronic energy + Delta-G solvation = -24582.166618 eV Core-core repulsion = 20884.134843 eV Total energy + Delta-G solvation = -3698.031775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.79669 -38.11851 -37.25303 -36.89296 -36.17393 -34.11008 -32.26379 -31.35377 -29.03662 -27.99392 -27.21060 -24.73048 -23.43551 -22.25332 -21.06503 -20.13942 -19.16961 -19.04254 -17.43013 -17.00345 -16.81484 -16.35013 -15.92826 -15.66241 -15.43904 -15.03096 -14.55383 -14.43068 -14.04818 -13.89195 -13.60427 -13.28564 -12.98318 -12.66531 -12.41378 -12.33900 -12.25253 -12.19623 -11.94842 -11.62199 -11.46716 -11.19584 -11.17740 -11.07745 -10.89955 -10.79650 -10.62419 -10.48469 -10.08913 -9.82638 -9.71645 -9.37437 -8.86931 -8.65660 -6.96484 -5.83395 -3.16038 -0.17431 2.29951 2.83905 3.29946 3.31477 3.35051 3.38917 3.42071 3.77096 4.05818 4.27062 4.29634 4.37075 4.54106 4.57126 4.88797 5.03390 5.13543 5.15270 5.20650 5.31571 5.33984 5.40364 5.46161 5.56148 5.66005 5.76101 5.80996 5.84977 6.02394 6.25203 6.34844 6.55839 6.64968 6.81075 7.17508 7.34434 7.51851 7.80167 7.90719 8.46044 8.96351 9.63957 10.52757 11.33465 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.003059 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.011652 B = 9149.859053 C =10258.187457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.713 5.713 16 C 0.508 3.492 17 O -0.550 6.550 18 C -0.135 4.135 19 C -0.066 4.066 20 H 0.103 0.897 21 C -0.119 4.119 22 C -0.588 4.588 23 S 2.382 3.618 24 O -0.943 6.943 25 O -0.942 6.942 26 C -0.577 4.577 27 H 0.254 0.746 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.403 0.597 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.408 -7.698 -0.869 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.363 5.363 16 C 0.294 3.706 17 O -0.429 6.429 18 C -0.176 4.176 19 C -0.086 4.086 20 H 0.121 0.879 21 C -0.157 4.157 22 C -0.718 4.718 23 S 2.566 3.434 24 O -0.940 6.940 25 O -0.939 6.939 26 C -0.707 4.707 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.238 0.762 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.976 -8.562 0.076 18.126 hybrid contribution -0.110 1.985 -0.754 2.126 sum 15.866 -6.577 -0.678 17.189 Atomic orbital electron populations 1.69816 1.04996 1.25311 1.56426 1.24771 0.95625 0.97439 1.02548 0.86195 0.78657 0.83818 0.77491 1.21658 1.21619 1.20757 1.18915 0.90066 0.81919 1.43919 0.90402 1.46103 1.02282 0.98524 1.86035 1.22234 0.87913 0.89560 0.96927 1.23759 0.96193 0.98988 1.00571 1.22497 0.92394 0.87683 0.95627 0.93364 1.21752 0.82566 0.98189 0.97646 1.45989 1.06419 1.61154 1.22742 1.20454 0.85229 0.79104 0.85836 1.90652 1.87304 1.44207 1.20704 1.21728 0.92054 1.04083 0.99713 1.21319 0.94159 0.91427 1.01736 0.87891 1.22323 0.89937 1.03498 0.99952 1.30602 1.07319 1.23950 1.09917 1.09246 0.80042 0.78843 0.75224 1.93609 1.78342 1.68731 1.53337 1.93609 1.83651 1.79270 1.37397 1.30578 1.22961 1.04107 1.13052 0.93638 0.95535 0.90872 0.92767 0.90512 0.92257 0.91052 0.76236 0.87871 0.88400 0.89228 0.88133 0.84606 0.84451 0.83107 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 11.40 55.49 0.63 -25.62 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.22 -5.66 10.51 -15.06 -0.16 -5.81 16 8 H 0.08 1.88 7.49 -52.49 -0.39 1.48 16 9 N -0.60 -14.06 3.59 -169.71 -0.61 -14.67 16 10 C 0.16 3.53 7.52 -2.84 -0.02 3.50 16 11 C -0.16 -2.74 7.86 -25.80 -0.20 -2.94 16 12 C 0.13 2.28 4.33 -66.87 -0.29 1.99 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.12 2.07 5.54 -4.05 -0.02 2.05 16 15 N -0.71 -10.65 5.35 -60.30 -0.32 -10.97 16 16 C 0.51 7.11 7.59 -10.98 -0.08 7.03 16 17 O -0.55 -9.35 14.52 5.56 0.08 -9.27 16 18 C -0.13 -1.24 5.07 -27.88 -0.14 -1.38 16 19 C -0.07 -0.54 2.24 -89.55 -0.20 -0.74 16 20 H 0.10 0.92 7.95 -51.93 -0.41 0.51 16 21 C -0.12 -0.66 5.80 -25.19 -0.15 -0.81 16 22 C -0.59 -3.27 7.31 38.24 0.28 -2.99 16 23 S 2.38 20.77 6.10 -107.50 -0.66 20.12 16 24 O -0.94 -11.22 18.15 -57.73 -1.05 -12.27 16 25 O -0.94 -11.98 18.15 -57.73 -1.05 -13.03 16 26 C -0.58 -4.98 5.83 37.76 0.22 -4.76 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.82 7.18 -51.93 -0.37 1.45 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.40 5.63 8.34 -40.82 -0.34 5.29 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 37 H 0.09 0.39 8.11 -51.93 -0.42 -0.04 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.15 1.53 7.30 -51.93 -0.38 1.15 16 42 H 0.13 1.02 7.81 -51.93 -0.41 0.61 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -36.54 355.11 -10.00 -46.54 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.50 Total: 2.87 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.86 Total: -5.15 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.30 Total: -51.27 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -2.01 Total: -34.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 20.77 SS G_CDS: -0.66 Total: 20.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.54 -10.00 -46.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754488552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.614 kcal (2) G-P(sol) polarization free energy of solvation -36.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds