Wall clock time and date at job start Fri Apr 10 2020 18:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48504 * 109.46995 * 270.00382 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99985 * 3 2 1 6 6 H 1.48497 * 109.47381 * 150.00260 * 3 2 1 7 7 C 1.38814 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00031 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.47813 * 134.58411 * 359.94988 * 9 7 2 11 11 C 1.53953 * 86.15951 * 204.57769 * 10 9 7 12 12 C 1.47585 * 134.49052 * 180.02562 * 9 7 2 13 13 H 1.09000 * 113.76456 * 269.78088 * 12 9 7 14 14 C 1.52997 * 113.76882 * 41.06695 * 12 9 7 15 15 N 1.46496 * 109.47194 * 283.65228 * 14 12 9 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 H 1.08998 * 109.64253 * 305.42463 * 19 18 16 21 21 C 1.53879 * 109.64137 * 185.00160 * 19 18 16 22 22 C 1.55055 * 106.62187 * 192.96306 * 21 19 18 23 23 S 1.83292 * 102.56536 * 42.43263 * 22 21 19 24 24 O 1.42103 * 109.35012 * 90.18368 * 23 22 21 25 25 O 1.42091 * 109.35776 * 223.25539 * 23 22 21 26 26 C 1.54162 * 109.64859 * 65.72599 * 19 18 16 27 27 H 0.97003 * 119.99496 * 359.97438 * 1 2 3 28 28 H 1.09006 * 113.66448 * 90.27206 * 10 9 7 29 29 H 1.08995 * 113.93906 * 318.91986 * 10 9 7 30 30 H 1.08995 * 113.73733 * 222.13779 * 11 10 9 31 31 H 1.08999 * 113.73794 * 90.83137 * 11 10 9 32 32 H 1.09002 * 109.47045 * 163.65354 * 14 12 9 33 33 H 1.09001 * 109.47375 * 43.65279 * 14 12 9 34 34 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 35 35 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 36 36 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 37 37 H 1.08997 * 110.02849 * 312.25171 * 21 19 18 38 38 H 1.09001 * 110.03065 * 73.63247 * 21 19 18 39 39 H 1.08994 * 110.78986 * 160.69672 * 22 21 19 40 40 H 1.08997 * 110.79067 * 284.16487 * 22 21 19 41 41 H 1.08998 * 110.31984 * 266.66140 * 26 19 18 42 42 H 1.09002 * 110.31634 * 28.85693 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1050 -2.7601 0.0009 11 6 0.3472 -4.0865 0.6384 12 6 1.7201 -3.8101 -0.0005 13 1 1.8339 -4.2344 -0.9981 14 6 2.9022 -4.1221 0.9193 15 7 4.1448 -3.6720 0.2873 16 6 5.3229 -3.8437 0.9191 17 8 5.3543 -4.3712 2.0107 18 6 6.6011 -3.3801 0.2692 19 6 7.7832 -3.6922 1.1891 20 1 7.6075 -3.2559 2.1724 21 6 9.0743 -3.1096 0.5879 22 6 10.2530 -3.7362 1.3766 23 16 9.7434 -5.4903 1.5286 24 8 10.2387 -6.2226 0.4161 25 8 10.0067 -5.9445 2.8490 26 6 7.9459 -5.2192 1.3241 27 1 -0.4849 0.8401 0.0004 28 1 -0.5284 -2.8742 -0.9971 29 1 -0.7213 -2.1452 0.6566 30 1 -0.1575 -4.9630 0.2323 31 1 0.3589 -4.0680 1.7281 32 1 2.9524 -5.1967 1.0947 33 1 2.7697 -3.6047 1.8695 34 1 4.1197 -3.2497 -0.5856 35 1 6.5506 -2.3055 0.0938 36 1 6.7340 -3.8974 -0.6809 37 1 9.1479 -3.3750 -0.4667 38 1 9.0829 -2.0255 0.7013 39 1 11.1832 -3.6510 0.8149 40 1 10.3496 -3.2748 2.3594 41 1 7.4066 -5.5815 2.1992 42 1 7.5877 -5.7190 0.4240 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754488552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:12 Heat of formation + Delta-G solvation = -88.855987 kcal Electronic energy + Delta-G solvation = -24583.411223 eV Core-core repulsion = 20884.134843 eV Total energy + Delta-G solvation = -3699.276380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.90210 -39.62570 -38.06940 -37.65138 -36.98390 -35.39566 -34.17473 -32.02412 -30.08032 -29.75109 -28.33254 -25.41950 -25.27451 -23.63504 -21.87228 -21.21274 -20.70215 -19.79238 -18.73446 -18.03746 -17.61115 -17.45805 -17.08016 -16.86187 -16.62624 -16.17291 -15.86815 -15.49549 -15.18157 -14.91388 -14.84953 -14.48098 -14.08278 -13.70891 -13.35152 -13.20392 -13.18853 -13.07523 -12.93198 -12.91510 -12.76429 -12.66257 -12.52673 -12.31491 -12.30928 -11.82346 -11.74542 -11.59403 -11.51130 -11.32356 -11.12028 -10.81051 -10.64382 -9.92421 -8.86536 -7.83759 -5.15674 -0.83681 1.46701 1.48729 1.56226 1.67447 1.76977 2.31081 2.51181 2.72251 3.09321 3.35124 3.41710 3.47403 3.66547 3.68091 3.90252 3.98792 4.07080 4.15017 4.25431 4.36713 4.45669 4.56046 4.65307 4.69011 4.72973 4.78905 4.88436 4.91006 4.96507 5.06018 5.13172 5.17858 5.24956 5.35742 5.53926 5.63746 5.76025 5.99371 6.68070 6.96983 7.36501 7.68652 8.63492 9.33632 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.003059 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.011652 B = 9149.859053 C =10258.187457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.305 1.305 6 H -0.266 1.266 7 C -0.211 4.211 8 H 0.092 0.908 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.134 4.134 12 C 0.134 3.866 13 H 0.071 0.929 14 C 0.133 3.867 15 N -0.716 5.716 16 C 0.501 3.499 17 O -0.585 6.585 18 C -0.130 4.130 19 C -0.070 4.070 20 H 0.091 0.909 21 C -0.115 4.115 22 C -0.560 4.560 23 S 2.384 3.616 24 O -0.979 6.979 25 O -0.992 6.992 26 C -0.575 4.575 27 H 0.243 0.757 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.409 0.591 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.129 0.871 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.685 -7.424 -2.217 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.191 1.191 7 C -0.340 4.340 8 H 0.110 0.890 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.172 4.172 12 C 0.028 3.972 13 H 0.088 0.912 14 C 0.007 3.993 15 N -0.366 5.366 16 C 0.289 3.711 17 O -0.466 6.466 18 C -0.170 4.170 19 C -0.090 4.090 20 H 0.109 0.891 21 C -0.154 4.154 22 C -0.693 4.693 23 S 2.574 3.426 24 O -0.976 6.976 25 O -0.989 6.989 26 C -0.706 4.706 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.245 0.755 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.179 0.821 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 18.291 -8.363 -1.281 20.153 hybrid contribution -0.837 1.853 -0.324 2.059 sum 17.454 -6.511 -1.605 18.698 Atomic orbital electron populations 1.70019 1.06506 1.25113 1.59152 1.25573 0.96400 1.00739 1.04049 0.85201 0.77777 0.79762 0.77376 1.21257 1.23205 1.19092 1.19377 0.90919 0.82846 1.40837 0.89015 1.46455 1.03088 1.00051 1.85973 1.22190 0.87320 0.91736 0.96371 1.23565 0.95559 0.97774 1.00346 1.22641 0.93233 0.84565 0.96780 0.91160 1.21453 0.83248 0.98711 0.95839 1.46007 1.06173 1.61446 1.23016 1.21365 0.86262 0.78057 0.85393 1.90648 1.87866 1.45676 1.22414 1.21829 0.89233 1.05395 1.00572 1.21395 0.95441 0.90714 1.01439 0.89053 1.22414 0.87712 1.04460 1.00794 1.30442 1.08510 1.18923 1.11437 1.08976 0.79757 0.80497 0.73399 1.93554 1.78930 1.71214 1.53899 1.93538 1.84375 1.81490 1.39544 1.30495 1.22395 1.05085 1.12584 0.94753 0.96056 0.94546 0.88976 0.90608 0.90642 0.94336 0.75511 0.85985 0.85349 0.87086 0.85954 0.82104 0.82994 0.85226 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.38 11.40 21.65 0.25 -56.14 16 2 C -0.08 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 43.50 29.55 68.60 2.03 45.53 16 4 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.21 -10.70 10.51 84.03 0.88 -9.82 16 8 H 0.09 4.26 7.49 -2.91 -0.02 4.23 16 9 N -0.63 -29.02 3.59 -690.84 -2.48 -31.50 16 10 C 0.15 6.68 7.52 86.44 0.65 7.33 16 11 C -0.13 -4.47 7.86 31.25 0.25 -4.23 16 12 C 0.13 4.60 4.33 45.09 0.19 4.79 16 13 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 14 C 0.13 4.27 5.54 86.38 0.48 4.75 16 15 N -0.72 -19.81 5.35 -463.07 -2.48 -22.29 16 16 C 0.50 13.02 7.59 87.66 0.67 13.69 16 17 O -0.59 -19.50 14.52 -3.02 -0.04 -19.54 16 18 C -0.13 -1.92 5.07 29.85 0.15 -1.77 16 19 C -0.07 -0.94 2.24 -10.10 -0.02 -0.97 16 20 H 0.09 1.47 7.95 -2.39 -0.02 1.45 16 21 C -0.12 -0.75 5.80 31.59 0.18 -0.57 16 22 C -0.56 -4.16 7.31 72.69 0.53 -3.63 16 23 S 2.38 39.54 6.10 -56.49 -0.34 39.20 16 24 O -0.98 -22.57 18.15 -127.47 -2.31 -24.88 16 25 O -0.99 -25.80 18.15 -127.47 -2.31 -28.12 16 26 C -0.57 -9.30 5.83 72.38 0.42 -8.87 16 27 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 1.88 7.18 -2.39 -0.02 1.86 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 10.27 8.34 -92.70 -0.77 9.50 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.13 1.15 8.03 -2.39 -0.02 1.13 16 37 H 0.11 0.34 8.11 -2.39 -0.02 0.32 16 38 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.13 2.71 7.30 -2.39 -0.02 2.69 16 42 H 0.14 1.96 7.81 -2.39 -0.02 1.95 16 Total: -1.00 -82.38 355.11 -2.60 -84.98 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.25 Total: 15.67 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 4.85 Total: -2.92 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.71 Total: -109.92 kcal Atomic # 8 Polarization: -67.87 SS G_CDS: -4.67 Total: -72.54 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 39.54 SS G_CDS: -0.34 Total: 39.20 kcal Total: -82.38 -2.60 -84.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754488552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.876 kcal (2) G-P(sol) polarization free energy of solvation -82.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds