Wall clock time and date at job start Fri Apr 10 2020 18:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99945 * 2 1 4 4 N 1.46498 * 109.47501 * 124.99812 * 3 2 1 5 5 C 1.46768 * 124.34879 * 89.99466 * 4 3 2 6 6 C 1.54480 * 105.55098 * 197.08340 * 5 4 3 7 7 C 1.54631 * 101.76472 * 334.54015 * 6 5 4 8 8 H 1.09000 * 110.48694 * 143.47575 * 7 6 5 9 9 N 1.46497 * 110.48907 * 265.98881 * 7 6 5 10 10 C 1.46494 * 119.99923 * 59.99766 * 9 7 6 11 11 S 1.65601 * 119.99801 * 239.99784 * 9 7 6 12 12 O 1.42098 * 104.27400 * 206.06811 * 11 9 7 13 13 O 1.42093 * 104.28029 * 333.93121 * 11 9 7 14 14 C 1.81403 * 104.44682 * 89.99976 * 11 9 7 15 15 C 1.52997 * 109.47120 * 179.97438 * 14 11 9 16 16 C 1.50696 * 109.47352 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99978 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00365 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99440 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47014 * 59.99899 * 20 18 16 22 22 H 1.48500 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46917 * 299.99922 * 20 18 16 24 24 C 1.34621 * 124.47196 * 270.02709 * 4 3 2 25 25 O 1.21286 * 124.90539 * 359.55259 * 24 4 3 26 26 H 1.08006 * 119.99659 * 359.97438 * 1 2 3 27 27 H 1.07992 * 119.99937 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00163 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47506 * 4.99893 * 3 2 1 30 30 H 1.08998 * 109.47494 * 244.99712 * 3 2 1 31 31 H 1.09002 * 110.24468 * 78.03845 * 5 4 3 32 32 H 1.09002 * 110.24463 * 316.12602 * 5 4 3 33 33 H 1.08995 * 110.97082 * 92.66028 * 6 5 4 34 34 H 1.08996 * 110.96783 * 216.38630 * 6 5 4 35 35 H 1.09001 * 109.47301 * 90.00552 * 10 9 7 36 36 H 1.09004 * 109.47125 * 210.00038 * 10 9 7 37 37 H 1.09004 * 109.47497 * 330.00116 * 10 9 7 38 38 H 1.08998 * 109.47402 * 300.00216 * 14 11 9 39 39 H 1.09005 * 109.46952 * 60.00181 * 14 11 9 40 40 H 1.08998 * 109.47577 * 300.00620 * 15 14 11 41 41 H 1.09009 * 109.47010 * 60.00178 * 15 14 11 42 42 H 0.97012 * 119.99656 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3792 0.8508 1.0760 6 6 4.8128 0.6667 2.5472 7 6 3.8828 1.6634 3.2771 8 1 3.5754 1.2614 4.2426 9 7 4.5509 2.9555 3.4504 10 6 5.0015 3.7101 2.2783 11 16 4.7968 3.5631 4.9711 12 8 4.8586 4.9699 4.7806 13 8 3.7679 2.9743 5.7544 14 6 6.4190 2.9153 5.4605 15 6 6.7642 3.4129 6.8655 16 6 8.1116 2.8742 7.2723 17 1 8.6664 2.2406 6.5962 18 6 8.6360 3.1902 8.5077 19 7 7.9602 3.9613 9.3312 20 14 10.3065 2.5230 9.0117 21 1 11.3376 2.9946 8.0529 22 1 10.6409 3.0049 10.3759 23 1 10.2684 1.0385 9.0071 24 6 2.6901 1.8001 2.3566 25 8 1.6158 2.2638 2.6757 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4027 -0.9313 31 1 5.0149 1.5874 0.5847 32 1 4.4270 -0.1009 0.5467 33 1 4.6307 -0.3542 2.8827 34 1 5.8596 0.9386 2.6822 35 1 4.2036 4.3735 1.9445 36 1 5.8788 4.3010 2.5419 37 1 5.2574 3.0174 1.4765 38 1 6.3912 1.8256 5.4572 39 1 7.1759 3.2615 4.7566 40 1 6.7922 4.5025 6.8684 41 1 6.0074 3.0670 7.5696 42 1 8.3290 4.1834 10.2005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281563044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:26 Heat of formation + Delta-G solvation = -103.540636 kcal Electronic energy + Delta-G solvation = -25124.891373 eV Core-core repulsion = 21424.978219 eV Total energy + Delta-G solvation = -3699.913155 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73369 -38.27921 -37.91615 -37.17391 -36.93844 -35.87925 -34.84286 -33.11725 -31.71725 -28.99016 -27.65425 -27.37956 -25.99564 -23.63001 -22.71074 -21.31300 -20.43779 -19.99245 -19.29264 -18.46971 -18.06491 -17.65313 -17.16764 -16.74145 -16.55047 -16.43054 -15.52237 -15.44741 -15.23495 -14.92676 -14.87685 -14.45712 -14.27096 -14.13347 -13.84059 -13.72988 -13.59681 -13.25162 -13.21524 -12.95285 -12.87347 -12.78071 -12.68746 -12.35969 -12.33465 -12.20508 -12.13947 -11.97700 -11.70201 -11.37422 -11.11667 -10.61629 -10.44836 -9.95416 -9.71860 -8.23372 -6.37841 -0.82046 1.15334 1.24572 1.43851 1.47483 1.55504 1.84925 2.15964 2.40681 2.84296 3.09958 3.12027 3.23847 3.45112 3.78488 3.92462 3.97153 4.07660 4.10458 4.15549 4.20654 4.35627 4.42076 4.55056 4.71130 4.76029 4.76400 4.87053 4.94992 4.98331 5.09678 5.15936 5.27346 5.29718 5.45953 5.54409 5.64158 5.70569 5.76701 6.04922 6.07011 6.76535 7.05674 7.32700 8.88896 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.003142 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.271135 B = 8910.470865 C = 9290.049995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.181 4.181 3 C 0.148 3.852 4 N -0.605 5.605 5 C 0.095 3.905 6 C -0.140 4.140 7 C 0.106 3.894 8 H 0.116 0.884 9 N -0.982 5.982 10 C 0.077 3.923 11 S 2.598 3.402 12 O -0.995 6.995 13 O -0.998 6.998 14 C -0.571 4.571 15 C 0.018 3.982 16 C -0.535 4.535 17 H 0.083 0.917 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.976 3.024 21 H -0.261 1.261 22 H -0.289 1.289 23 H -0.261 1.261 24 C 0.505 3.495 25 O -0.574 6.574 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -11.767 -24.968 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.199 4.199 3 C 0.027 3.973 4 N -0.338 5.338 5 C -0.026 4.026 6 C -0.179 4.179 7 C -0.004 4.004 8 H 0.134 0.866 9 N -0.820 5.820 10 C -0.066 4.066 11 S 2.698 3.302 12 O -0.985 6.985 13 O -0.988 6.988 14 C -0.704 4.704 15 C -0.021 4.021 16 C -0.574 4.574 17 H 0.101 0.899 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.215 1.215 23 H -0.185 1.185 24 C 0.291 3.709 25 O -0.452 6.452 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.147 0.853 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.093 -10.841 -24.308 27.098 hybrid contribution 0.498 0.006 0.877 1.009 sum -4.595 -10.835 -23.430 26.220 Atomic orbital electron populations 1.24057 0.96455 1.02373 0.99046 1.23388 0.96282 0.99169 1.01104 1.20642 0.92040 0.95563 0.89044 1.48440 1.14513 1.61014 1.09804 1.22588 0.79853 1.02513 0.97621 1.23227 1.01378 0.99559 0.93778 1.21753 0.92365 0.85073 1.01242 0.86609 1.57234 1.71836 1.30042 1.22887 1.21904 0.99952 0.96632 0.88156 1.05295 0.78028 0.73884 0.73013 1.93490 1.88417 1.31661 1.84907 1.93496 1.56112 1.79140 1.70041 1.30273 1.19180 1.13595 1.07363 1.18846 0.98229 0.95814 0.89183 1.21499 1.02938 1.31313 1.01667 0.89856 1.26169 1.02439 0.95245 0.96647 1.70120 1.40512 1.37683 1.09425 0.85338 0.78392 0.79133 0.77230 1.18514 1.21468 1.18526 1.21448 0.88381 0.76545 0.84575 1.90696 1.28329 1.46963 1.79220 0.89379 0.87047 0.85317 0.91927 0.85791 0.88179 0.86614 0.86644 0.85508 0.94206 0.89388 0.86543 0.82963 0.82918 0.97827 0.97877 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 14.32 67.78 0.97 -1.73 16 2 C -0.18 -2.38 9.85 25.65 0.25 -2.13 16 3 C 0.15 2.02 6.38 85.63 0.55 2.57 16 4 N -0.60 -9.83 2.92 -822.00 -2.40 -12.24 16 5 C 0.10 0.68 6.57 86.83 0.57 1.25 16 6 C -0.14 -1.47 6.43 31.65 0.20 -1.26 16 7 C 0.11 2.48 3.38 44.99 0.15 2.63 16 8 H 0.12 3.17 6.91 -2.39 -0.02 3.15 16 9 N -0.98 -25.93 3.06 -516.55 -1.58 -27.51 16 10 C 0.08 1.52 9.43 127.77 1.20 2.73 16 11 S 2.60 97.19 5.37 -56.49 -0.30 96.88 16 12 O -0.99 -43.70 17.09 -127.65 -2.18 -45.88 16 13 O -1.00 -45.13 16.58 -127.65 -2.12 -47.25 16 14 C -0.57 -20.16 6.12 71.98 0.44 -19.72 16 15 C 0.02 0.94 4.98 29.85 0.15 1.09 16 16 C -0.54 -28.62 9.11 25.60 0.23 -28.39 16 17 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 18 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 19 N -0.94 -56.97 13.29 21.45 0.28 -56.68 16 20 Si 0.98 42.14 29.54 68.60 2.03 44.16 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 22 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 C 0.51 13.71 7.05 87.87 0.62 14.33 16 25 O -0.57 -22.13 17.60 -3.05 -0.05 -22.18 16 26 H 0.09 1.47 7.84 -2.91 -0.02 1.45 16 27 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 28 H 0.13 1.23 8.06 -2.91 -0.02 1.20 16 29 H 0.06 1.17 7.58 -2.39 -0.02 1.15 16 30 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.32 6.19 -2.39 -0.01 0.31 16 32 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.13 0.84 8.08 -2.39 -0.02 0.82 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.60 7.79 -2.38 -0.02 1.58 16 37 H 0.12 1.22 4.78 -2.38 -0.01 1.21 16 38 H 0.15 4.41 8.14 -2.39 -0.02 4.39 16 39 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 42 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -88.95 362.32 0.48 -88.47 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.00 Total: 10.76 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 5.80 Total: -28.54 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.70 Total: -96.43 kcal Atomic # 8 Polarization: -110.96 SS G_CDS: -4.35 Total: -115.31 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 97.19 SS G_CDS: -0.30 Total: 96.88 kcal Total: -88.95 0.48 -88.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281563044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.075 kcal (2) G-P(sol) polarization free energy of solvation -88.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds