Wall clock time and date at job start Fri Apr 10 2020 18:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47345 * 293.95500 * 3 2 1 5 5 O 1.21299 * 119.99873 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00113 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00341 * 180.02562 * 6 4 3 8 8 H 1.08001 * 120.00752 * 140.09335 * 7 6 4 9 9 C 1.38958 * 119.99948 * 320.09998 * 7 6 4 10 10 N 1.31412 * 119.99934 * 162.03765 * 9 7 6 11 11 Si 1.86804 * 119.99625 * 342.03883 * 9 7 6 12 12 H 1.48500 * 109.47076 * 93.80449 * 11 9 7 13 13 H 1.48496 * 109.47000 * 333.80022 * 11 9 7 14 14 H 1.48503 * 109.46746 * 213.80091 * 11 9 7 15 15 C 1.46506 * 119.99769 * 359.97438 * 6 4 3 16 16 C 1.52993 * 117.49702 * 182.28603 * 15 6 4 17 17 C 1.52999 * 60.00364 * 252.51667 * 16 15 6 18 18 C 1.46899 * 111.00225 * 123.95857 * 2 1 3 19 19 H 1.08997 * 110.01156 * 294.66693 * 18 2 1 20 20 C 1.53881 * 110.02592 * 56.04117 * 18 2 1 21 21 C 1.54165 * 108.69908 * 166.46998 * 20 18 2 22 22 S 1.82909 * 105.08930 * 332.09585 * 21 20 18 23 23 O 1.42104 * 109.35381 * 115.52204 * 22 21 20 24 24 O 1.42107 * 109.35361 * 248.72104 * 22 21 20 25 25 C 1.55047 * 110.02975 * 173.23559 * 18 2 1 26 26 H 1.09000 * 109.47462 * 59.99825 * 1 2 3 27 27 H 1.09002 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47028 * 299.99940 * 1 2 3 29 29 H 1.08998 * 109.46654 * 173.95500 * 3 2 1 30 30 H 1.09002 * 109.46809 * 53.95904 * 3 2 1 31 31 H 0.97006 * 119.99521 * 179.97438 * 10 9 7 32 32 H 1.08994 * 115.54775 * 327.99790 * 15 6 4 33 33 H 1.09005 * 117.50029 * 359.97438 * 16 15 6 34 34 H 1.08999 * 117.50200 * 145.02723 * 16 15 6 35 35 H 1.09007 * 117.49942 * 252.51803 * 17 16 15 36 36 H 1.08995 * 117.51843 * 107.48241 * 17 16 15 37 37 H 1.08989 * 109.64663 * 286.32417 * 20 18 2 38 38 H 1.08999 * 109.64204 * 46.62623 * 20 18 2 39 39 H 1.09012 * 110.31447 * 90.99920 * 21 20 18 40 40 H 1.08998 * 110.32001 * 213.18609 * 21 20 18 41 41 H 1.08999 * 110.78854 * 316.54563 * 25 18 2 42 42 H 1.09001 * 110.78535 * 80.00121 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0045 1.4456 -2.1408 6 7 2.0188 3.3199 -1.5237 7 6 1.6922 3.9349 -2.7046 8 1 1.3854 4.9704 -2.7075 9 6 1.7559 3.2258 -3.8980 10 7 1.1253 3.6713 -4.9614 11 14 2.7378 1.6394 -3.9905 12 1 1.8390 0.4853 -3.7345 13 1 3.8153 1.6639 -2.9689 14 1 3.3397 1.5079 -5.3417 15 6 2.7821 4.0466 -0.5060 16 6 3.1398 5.5051 -0.7988 17 6 4.2251 4.4275 -0.8433 18 6 1.9955 -0.7661 1.1375 19 1 1.7301 -0.2742 2.0733 20 6 1.4304 -2.1972 1.1158 21 6 2.2450 -3.0652 2.0954 22 16 3.9034 -2.2954 2.1476 23 8 4.1501 -1.7966 3.4552 24 8 4.8446 -3.1621 1.5292 25 6 3.5362 -0.8957 1.0228 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0797 1.3444 0.1082 30 1 1.5611 1.9273 0.8310 31 1 1.1701 3.1765 -5.7945 32 1 2.5603 3.7802 0.5274 33 1 2.8076 5.9238 -1.7488 34 1 3.1534 6.1986 0.0420 35 1 4.9525 4.4120 -0.0317 36 1 4.6065 4.1371 -1.8222 37 1 0.3844 -2.1828 1.4216 38 1 1.5103 -2.6074 0.1091 39 1 1.7886 -3.0486 3.0852 40 1 2.3142 -4.0886 1.7267 41 1 3.8294 -1.1338 0.0004 42 1 4.0276 0.0151 1.3652 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329112805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:34 Heat of formation + Delta-G solvation = -36.363746 kcal Electronic energy + Delta-G solvation = -25849.636668 eV Core-core repulsion = 22152.636522 eV Total energy + Delta-G solvation = -3697.000146 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.60692 -38.19426 -37.24093 -36.44918 -36.21033 -33.98877 -32.86031 -31.52535 -30.08473 -28.42044 -25.33408 -25.07599 -23.34201 -21.98598 -21.42651 -20.56403 -19.25969 -19.00650 -17.48707 -17.09905 -16.70551 -16.28459 -15.91981 -15.51128 -15.23386 -14.90688 -14.63351 -14.28407 -14.17762 -13.88634 -13.48690 -13.15224 -13.02003 -12.66951 -12.43182 -12.37742 -12.36807 -12.21020 -12.01249 -11.72643 -11.57072 -11.40769 -11.27575 -11.11521 -10.86890 -10.66450 -10.52349 -10.35377 -10.07106 -9.97521 -9.64208 -8.67582 -8.46890 -8.15989 -7.51658 -6.19477 -3.98516 -0.19760 2.26547 3.25444 3.33090 3.50868 3.58246 3.72189 3.79461 3.81191 4.16019 4.30598 4.36587 4.44470 4.53740 4.59415 4.63651 4.68333 5.07602 5.16101 5.24535 5.33057 5.34231 5.40573 5.47525 5.51559 5.60215 5.62118 5.67530 5.71429 5.73375 5.81743 6.10241 6.20611 6.40299 6.59259 6.79061 6.96159 7.11192 7.80902 7.92019 8.72910 8.86699 9.39539 9.75533 10.83449 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.004421 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.904041 B = 6331.878738 C = 6796.067647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.506 5.506 3 C 0.039 3.961 4 C 0.448 3.552 5 O -0.523 6.523 6 N -0.434 5.434 7 C -0.349 4.349 8 H 0.096 0.904 9 C 0.088 3.912 10 N -0.868 5.868 11 Si 0.924 3.076 12 H -0.245 1.245 13 H -0.286 1.286 14 H -0.318 1.318 15 C 0.060 3.940 16 C -0.171 4.171 17 C -0.199 4.199 18 C 0.084 3.916 19 H 0.066 0.934 20 C -0.111 4.111 21 C -0.589 4.589 22 S 2.390 3.610 23 O -0.940 6.940 24 O -0.938 6.938 25 C -0.586 4.586 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.272 0.728 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.151 0.849 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -8.810 15.398 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.231 5.231 3 C -0.092 4.092 4 C 0.238 3.762 5 O -0.405 6.405 6 N -0.155 5.155 7 C -0.475 4.475 8 H 0.114 0.886 9 C -0.121 4.121 10 N -0.503 5.503 11 Si 0.757 3.243 12 H -0.171 1.171 13 H -0.212 1.212 14 H -0.249 1.249 15 C -0.046 4.046 16 C -0.208 4.208 17 C -0.238 4.238 18 C -0.026 4.026 19 H 0.083 0.917 20 C -0.150 4.150 21 C -0.719 4.719 22 S 2.573 3.427 23 O -0.937 6.937 24 O -0.935 6.935 25 C -0.716 4.716 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.816 -9.605 14.840 17.900 hybrid contribution -0.364 0.078 0.240 0.443 sum 2.452 -9.526 15.080 18.004 Atomic orbital electron populations 1.22682 0.85840 1.02150 1.02658 1.61671 1.09136 1.13054 1.39226 1.22065 1.01191 0.88470 0.97445 1.19966 0.84051 0.83559 0.88644 1.90486 1.41518 1.63031 1.45448 1.43139 1.46415 1.10593 1.15391 1.18764 1.47987 0.98989 0.81739 0.88627 1.25352 0.93916 0.98485 0.94351 1.69737 1.37751 1.40574 1.02196 0.86163 0.78401 0.85203 0.74515 1.17093 1.21211 1.24903 1.21831 0.93741 0.96347 0.92670 1.23118 1.02737 0.91090 1.03893 1.23284 0.92302 1.05056 1.03133 1.22252 0.90492 0.95232 0.94670 0.91666 1.21994 1.00930 0.91868 1.00188 1.30455 1.21576 1.11260 1.08632 1.08992 0.78412 0.78589 0.76681 1.93618 1.84300 1.79929 1.35821 1.93622 1.58270 1.63973 1.77645 1.30854 1.04107 1.18912 1.17705 0.87921 0.91507 0.96167 0.88897 0.92726 0.91810 0.87358 0.87051 0.89428 0.89493 0.88520 0.88824 0.88308 0.84631 0.84227 0.83113 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 8.88 60.06 0.53 0.73 16 2 N -0.51 -7.53 4.38 -234.47 -1.03 -8.56 16 3 C 0.04 0.64 3.95 -4.97 -0.02 0.62 16 4 C 0.45 9.95 5.60 -10.99 -0.06 9.89 16 5 O -0.52 -13.47 9.15 5.54 0.05 -13.42 16 6 N -0.43 -9.91 2.56 -107.73 -0.28 -10.18 16 7 C -0.35 -9.46 8.77 -14.93 -0.13 -9.59 16 8 H 0.10 2.72 6.96 -52.49 -0.37 2.35 16 9 C 0.09 2.54 4.91 -17.46 -0.09 2.45 16 10 N -0.87 -26.12 13.96 55.50 0.77 -25.35 16 11 Si 0.92 24.48 24.52 -169.99 -4.17 20.31 16 12 H -0.24 -6.76 6.10 56.52 0.34 -6.42 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.32 -8.44 7.11 56.52 0.40 -8.04 16 15 C 0.06 1.06 5.85 -67.93 -0.40 0.67 16 16 C -0.17 -2.81 9.79 -26.74 -0.26 -3.07 16 17 C -0.20 -3.24 10.37 -26.73 -0.28 -3.52 16 18 C 0.08 0.88 2.33 -66.17 -0.15 0.73 16 19 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 20 C -0.11 -0.91 4.86 -25.66 -0.12 -1.04 16 21 C -0.59 -3.81 7.26 37.77 0.27 -3.54 16 22 S 2.39 22.31 6.10 -107.50 -0.66 21.65 16 23 O -0.94 -11.53 18.15 -57.71 -1.05 -12.58 16 24 O -0.94 -12.17 18.15 -57.71 -1.05 -13.22 16 25 C -0.59 -5.76 5.86 38.24 0.22 -5.53 16 26 H 0.10 1.88 5.88 -51.93 -0.31 1.58 16 27 H 0.07 0.78 6.38 -51.93 -0.33 0.45 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 1.38 6.45 -51.93 -0.34 1.05 16 30 H 0.05 0.77 7.55 -51.93 -0.39 0.38 16 31 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 32 H 0.11 1.56 6.99 -51.93 -0.36 1.20 16 33 H 0.11 2.12 6.49 -51.93 -0.34 1.79 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 36 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.09 0.65 7.16 -51.94 -0.37 0.28 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.14 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.15 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.14 1.19 7.45 -51.93 -0.39 0.80 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -37.59 338.62 -8.96 -46.55 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.18 Total: 0.89 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -0.48 Total: -11.20 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.53 Total: -44.09 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -2.04 Total: -39.22 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.17 Total: 20.31 kcal Atomic # 16 Polarization: 22.31 SS G_CDS: -0.66 Total: 21.65 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.59 -8.96 -46.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329112805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.189 kcal (2) G-P(sol) polarization free energy of solvation -37.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds