Wall clock time and date at job start Fri Apr 10 2020 18:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47345 * 293.95500 * 3 2 1 5 5 O 1.21299 * 119.99873 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00113 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00341 * 180.02562 * 6 4 3 8 8 H 1.08001 * 120.00752 * 140.09335 * 7 6 4 9 9 C 1.38958 * 119.99948 * 320.09998 * 7 6 4 10 10 N 1.31412 * 119.99934 * 162.03765 * 9 7 6 11 11 Si 1.86804 * 119.99625 * 342.03883 * 9 7 6 12 12 H 1.48500 * 109.47076 * 93.80449 * 11 9 7 13 13 H 1.48496 * 109.47000 * 333.80022 * 11 9 7 14 14 H 1.48503 * 109.46746 * 213.80091 * 11 9 7 15 15 C 1.46506 * 119.99769 * 359.97438 * 6 4 3 16 16 C 1.52993 * 117.49702 * 182.28603 * 15 6 4 17 17 C 1.52999 * 60.00364 * 252.51667 * 16 15 6 18 18 C 1.46899 * 111.00225 * 123.95857 * 2 1 3 19 19 H 1.08997 * 110.01156 * 294.66693 * 18 2 1 20 20 C 1.53881 * 110.02592 * 56.04117 * 18 2 1 21 21 C 1.54165 * 108.69908 * 166.46998 * 20 18 2 22 22 S 1.82909 * 105.08930 * 332.09585 * 21 20 18 23 23 O 1.42104 * 109.35381 * 115.52204 * 22 21 20 24 24 O 1.42107 * 109.35361 * 248.72104 * 22 21 20 25 25 C 1.55047 * 110.02975 * 173.23559 * 18 2 1 26 26 H 1.09000 * 109.47462 * 59.99825 * 1 2 3 27 27 H 1.09002 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47028 * 299.99940 * 1 2 3 29 29 H 1.08998 * 109.46654 * 173.95500 * 3 2 1 30 30 H 1.09002 * 109.46809 * 53.95904 * 3 2 1 31 31 H 0.97006 * 119.99521 * 179.97438 * 10 9 7 32 32 H 1.08994 * 115.54775 * 327.99790 * 15 6 4 33 33 H 1.09005 * 117.50029 * 359.97438 * 16 15 6 34 34 H 1.08999 * 117.50200 * 145.02723 * 16 15 6 35 35 H 1.09007 * 117.49942 * 252.51803 * 17 16 15 36 36 H 1.08995 * 117.51843 * 107.48241 * 17 16 15 37 37 H 1.08989 * 109.64663 * 286.32417 * 20 18 2 38 38 H 1.08999 * 109.64204 * 46.62623 * 20 18 2 39 39 H 1.09012 * 110.31447 * 90.99920 * 21 20 18 40 40 H 1.08998 * 110.32001 * 213.18609 * 21 20 18 41 41 H 1.08999 * 110.78854 * 316.54563 * 25 18 2 42 42 H 1.09001 * 110.78535 * 80.00121 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0045 1.4456 -2.1408 6 7 2.0188 3.3199 -1.5237 7 6 1.6922 3.9349 -2.7046 8 1 1.3854 4.9704 -2.7075 9 6 1.7559 3.2258 -3.8980 10 7 1.1253 3.6713 -4.9614 11 14 2.7378 1.6394 -3.9905 12 1 1.8390 0.4853 -3.7345 13 1 3.8153 1.6639 -2.9689 14 1 3.3397 1.5079 -5.3417 15 6 2.7821 4.0466 -0.5060 16 6 3.1398 5.5051 -0.7988 17 6 4.2251 4.4275 -0.8433 18 6 1.9955 -0.7661 1.1375 19 1 1.7301 -0.2742 2.0733 20 6 1.4304 -2.1972 1.1158 21 6 2.2450 -3.0652 2.0954 22 16 3.9034 -2.2954 2.1476 23 8 4.1501 -1.7966 3.4552 24 8 4.8446 -3.1621 1.5292 25 6 3.5362 -0.8957 1.0228 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0797 1.3444 0.1082 30 1 1.5611 1.9273 0.8310 31 1 1.1701 3.1765 -5.7945 32 1 2.5603 3.7802 0.5274 33 1 2.8076 5.9238 -1.7488 34 1 3.1534 6.1986 0.0420 35 1 4.9525 4.4120 -0.0317 36 1 4.6065 4.1371 -1.8222 37 1 0.3844 -2.1828 1.4216 38 1 1.5103 -2.6074 0.1091 39 1 1.7886 -3.0486 3.0852 40 1 2.3142 -4.0886 1.7267 41 1 3.8294 -1.1338 0.0004 42 1 4.0276 0.0151 1.3652 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329112805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:33 Heat of formation + Delta-G solvation = -67.592636 kcal Electronic energy + Delta-G solvation = -25850.990854 eV Core-core repulsion = 22152.636522 eV Total energy + Delta-G solvation = -3698.354332 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13945 -39.29065 -38.08427 -37.92782 -37.05845 -35.12970 -34.57522 -33.40850 -30.82452 -29.77650 -26.83006 -26.07306 -24.53099 -23.32286 -22.87130 -21.50643 -20.87701 -19.79818 -18.97085 -18.03678 -17.90133 -17.51844 -17.32165 -16.69284 -16.44798 -15.96313 -15.81589 -15.60497 -15.21881 -15.15752 -14.83975 -14.64733 -14.49741 -14.22574 -13.55809 -13.41446 -13.24257 -13.19302 -13.05989 -12.94315 -12.81140 -12.63899 -12.49930 -12.24039 -12.16458 -12.00209 -11.94405 -11.65852 -11.55917 -11.21752 -11.19259 -10.68201 -10.30697 -9.41192 -9.23360 -8.38461 -6.13737 -0.89988 1.23574 1.35872 1.57186 1.58950 1.96867 2.42239 2.46265 2.66146 2.93874 2.99218 3.14424 3.24048 3.42481 3.66936 3.80163 3.86703 3.98872 4.04877 4.06057 4.16252 4.25847 4.34837 4.40620 4.53452 4.60283 4.66161 4.73069 4.87320 4.88461 4.96875 4.97220 5.08581 5.22862 5.27618 5.45372 5.70009 5.79452 5.94551 6.12784 6.79236 6.93416 7.37870 7.91257 8.67658 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.004421 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.904041 B = 6331.878738 C = 6796.067647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.048 3.952 4 C 0.442 3.558 5 O -0.564 6.564 6 N -0.455 5.455 7 C -0.334 4.334 8 H 0.070 0.930 9 C 0.039 3.961 10 N -0.916 5.916 11 Si 0.977 3.023 12 H -0.266 1.266 13 H -0.272 1.272 14 H -0.325 1.325 15 C 0.044 3.956 16 C -0.170 4.170 17 C -0.187 4.187 18 C 0.080 3.920 19 H 0.093 0.907 20 C -0.114 4.114 21 C -0.560 4.560 22 S 2.404 3.596 23 O -0.970 6.970 24 O -0.982 6.982 25 C -0.591 4.591 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.270 0.730 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.140 0.860 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -9.977 19.422 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.082 4.082 4 C 0.234 3.766 5 O -0.448 6.448 6 N -0.177 5.177 7 C -0.461 4.461 8 H 0.087 0.913 9 C -0.164 4.164 10 N -0.554 5.554 11 Si 0.810 3.190 12 H -0.193 1.193 13 H -0.198 1.198 14 H -0.257 1.257 15 C -0.061 4.061 16 C -0.207 4.207 17 C -0.225 4.225 18 C -0.030 4.030 19 H 0.111 0.889 20 C -0.153 4.153 21 C -0.693 4.693 22 S 2.591 3.409 23 O -0.967 6.967 24 O -0.979 6.979 25 C -0.721 4.721 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.182 0.818 40 H 0.177 0.823 41 H 0.158 0.842 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.378 -10.751 18.906 22.010 hybrid contribution -0.621 0.469 -0.911 1.198 sum 2.757 -10.282 17.995 20.908 Atomic orbital electron populations 1.22562 0.85872 1.03325 1.01200 1.61544 1.09394 1.12464 1.42283 1.21986 1.02620 0.89410 0.94213 1.21157 0.82189 0.82983 0.90294 1.90458 1.42854 1.64076 1.47424 1.43353 1.47830 1.11410 1.15102 1.18644 1.46262 0.97868 0.83365 0.91256 1.25953 0.95156 1.00668 0.94646 1.69826 1.40628 1.42114 1.02848 0.85296 0.77259 0.82221 0.74192 1.19347 1.19766 1.25702 1.22264 0.94185 0.96558 0.93050 1.23139 1.02598 0.91351 1.03629 1.23323 0.92341 1.03860 1.02986 1.22458 0.90442 0.96011 0.94065 0.88927 1.22054 1.02188 0.90684 1.00387 1.30285 1.17596 1.11421 1.09965 1.08439 0.79262 0.77872 0.75354 1.93574 1.85559 1.80486 1.37075 1.93567 1.61196 1.64919 1.78176 1.30877 1.04154 1.19844 1.17247 0.92767 0.89115 0.94070 0.86905 0.89529 0.92100 0.82870 0.90860 0.85324 0.84954 0.91801 0.86762 0.89110 0.81827 0.82323 0.84198 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 8.88 127.69 1.13 1.60 16 2 N -0.53 -14.21 4.38 -895.74 -3.93 -18.13 16 3 C 0.05 1.42 3.95 85.56 0.34 1.75 16 4 C 0.44 19.19 5.60 87.66 0.49 19.68 16 5 O -0.56 -29.48 9.15 -3.09 -0.03 -29.50 16 6 N -0.46 -20.48 2.56 -613.12 -1.57 -22.04 16 7 C -0.33 -18.67 8.77 84.04 0.74 -17.93 16 8 H 0.07 4.15 6.96 -2.91 -0.02 4.13 16 9 C 0.04 2.34 4.91 84.93 0.42 2.75 16 10 N -0.92 -58.03 13.96 21.67 0.30 -57.72 16 11 Si 0.98 52.58 24.52 68.60 1.68 54.27 16 12 H -0.27 -15.08 6.10 99.48 0.61 -14.47 16 13 H -0.27 -13.70 7.11 99.48 0.71 -13.00 16 14 H -0.33 -17.52 7.11 99.48 0.71 -16.81 16 15 C 0.04 1.42 5.85 44.99 0.26 1.68 16 16 C -0.17 -5.22 9.79 30.59 0.30 -4.92 16 17 C -0.19 -5.53 10.37 30.60 0.32 -5.21 16 18 C 0.08 1.33 2.33 45.91 0.11 1.44 16 19 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 20 C -0.11 -1.37 4.86 31.29 0.15 -1.22 16 21 C -0.56 -4.67 7.26 72.38 0.53 -4.15 16 22 S 2.40 38.47 6.10 -56.49 -0.34 38.13 16 23 O -0.97 -21.22 18.15 -127.49 -2.31 -23.53 16 24 O -0.98 -24.20 18.15 -127.49 -2.31 -26.51 16 25 C -0.59 -9.79 5.86 72.68 0.43 -9.37 16 26 H 0.05 1.98 5.88 -2.39 -0.01 1.96 16 27 H 0.09 1.86 6.38 -2.39 -0.02 1.84 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 2.87 6.45 -2.39 -0.02 2.85 16 30 H 0.09 1.99 7.55 -2.39 -0.02 1.97 16 31 H 0.27 16.32 8.31 -92.70 -0.77 15.55 16 32 H 0.15 3.57 6.99 -2.39 -0.02 3.55 16 33 H 0.07 2.84 6.49 -2.38 -0.02 2.83 16 34 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.13 2.75 8.14 -2.38 -0.02 2.73 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.11 0.98 7.16 -2.39 -0.02 0.96 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.16 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.15 2.04 7.45 -2.39 -0.02 2.02 16 Total: -1.00 -87.95 338.62 -2.38 -90.32 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.93 Total: 8.61 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 5.21 Total: -13.88 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -5.19 Total: -97.90 kcal Atomic # 8 Polarization: -74.89 SS G_CDS: -4.65 Total: -79.55 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 1.68 Total: 54.27 kcal Atomic # 16 Polarization: 38.47 SS G_CDS: -0.34 Total: 38.13 kcal Total: -87.95 -2.38 -90.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329112805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.732 kcal (2) G-P(sol) polarization free energy of solvation -87.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds