Wall clock time and date at job start Fri Apr 10 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.34777 * 120.00580 * 179.97438 * 2 1 3 5 5 O 1.21289 * 119.99307 * 359.97438 * 4 2 1 6 6 C 1.50690 * 120.00507 * 180.02562 * 4 2 1 7 7 H 1.09007 * 109.87284 * 304.29922 * 6 4 2 8 8 C 1.54100 * 109.88051 * 65.30328 * 6 4 2 9 9 C 1.54811 * 104.18826 * 121.45441 * 8 6 4 10 10 C 1.55001 * 102.09069 * 20.88558 * 9 8 6 11 11 H 1.08995 * 110.62286 * 81.47543 * 10 9 8 12 12 C 1.53001 * 110.61566 * 204.31877 * 10 9 8 13 13 N 1.46502 * 109.47174 * 184.99684 * 12 10 9 14 14 C 1.34773 * 120.00445 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99598 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00338 * 180.02562 * 14 13 12 17 17 S 1.80994 * 109.47091 * 180.02562 * 16 14 13 18 18 C 1.76207 * 100.00038 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99139 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00110 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46967 * 90.00159 * 22 20 18 24 24 H 1.48501 * 109.47281 * 210.00358 * 22 20 18 25 25 H 1.48499 * 109.46965 * 330.00361 * 22 20 18 26 26 O 1.43743 * 109.88208 * 183.29324 * 6 4 2 27 27 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 29 29 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 30 30 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 31 31 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 32 32 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 33 33 H 1.09003 * 110.49016 * 240.13112 * 8 6 4 34 34 H 1.09001 * 110.48865 * 2.78018 * 8 6 4 35 35 H 1.09002 * 110.90634 * 139.07626 * 9 8 6 36 36 H 1.08994 * 110.90963 * 262.65376 * 9 8 6 37 37 H 1.08997 * 109.47158 * 304.99308 * 12 10 9 38 38 H 1.09003 * 109.47087 * 64.99743 * 12 10 9 39 39 H 0.97006 * 119.99561 * 0.02562 * 13 12 10 40 40 H 1.08997 * 109.46710 * 300.00029 * 16 14 13 41 41 H 1.08996 * 109.46612 * 60.00051 * 16 14 13 42 42 H 0.97007 * 119.99848 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5325 -2.2175 0.0015 6 6 3.6459 -1.1671 0.0011 7 1 4.0168 -0.5896 -0.8458 8 6 4.1694 -0.5613 1.3178 9 6 5.0347 -1.6866 1.9355 10 6 5.3537 -2.5664 0.6999 11 1 6.1844 -2.1458 0.1333 12 6 5.6669 -4.0018 1.1270 13 7 6.0799 -4.7804 -0.0433 14 6 6.4075 -6.0805 0.0936 15 8 6.3599 -6.6060 1.1856 16 6 6.8329 -6.8812 -1.1101 17 16 7.2033 -8.5793 -0.6049 18 6 7.6592 -9.2689 -2.1610 19 1 7.6476 -8.6536 -3.0484 20 6 8.0342 -10.6025 -2.2459 21 7 8.0488 -11.3523 -1.1641 22 14 8.5182 -11.3335 -3.8954 23 1 9.9795 -11.1671 -4.1010 24 1 8.1767 -12.7786 -3.9159 25 1 7.7830 -10.6358 -4.9808 26 8 4.1348 -2.5166 -0.0761 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3791 1.5835 1.0277 31 1 3.1499 1.1384 -0.5139 32 1 1.6083 2.0284 -0.5138 33 1 4.7774 0.3208 1.1168 34 1 3.3398 -0.3114 1.9792 35 1 5.9482 -1.2806 2.3701 36 1 4.4691 -2.2489 2.6784 37 1 6.4723 -3.9948 1.8613 38 1 4.7774 -4.4521 1.5675 39 1 6.1183 -4.3599 -0.9166 40 1 6.0276 -6.8885 -1.8446 41 1 7.7223 -6.4305 -1.5503 42 1 8.3105 -12.2845 -1.2235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330654350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:39 Heat of formation + Delta-G solvation = -142.170299 kcal Electronic energy + Delta-G solvation = -23679.842054 eV Core-core repulsion = 19978.253791 eV Total energy + Delta-G solvation = -3701.588263 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62237 -40.62504 -39.55472 -36.68297 -35.86575 -34.58861 -33.25116 -32.33466 -30.65260 -28.84236 -27.79374 -27.52121 -25.91258 -23.22958 -22.50618 -21.67228 -20.54792 -19.84545 -18.40828 -17.94826 -17.71817 -17.30624 -17.23169 -16.88606 -16.87810 -16.38342 -15.85818 -15.84536 -15.21942 -14.73079 -14.61470 -14.44686 -14.35285 -14.12075 -13.81953 -13.55048 -13.49499 -13.33001 -13.17287 -12.89186 -12.88346 -12.65997 -12.64879 -12.58153 -12.29719 -11.90266 -11.72909 -11.21670 -11.14479 -10.97497 -10.51742 -10.29199 -10.16802 -9.75489 -8.67803 -8.34926 -6.13507 1.25854 1.42536 1.45874 1.47573 1.56965 1.59177 1.80283 2.24353 2.28174 2.78754 2.98884 3.31401 3.31580 3.50921 3.79749 3.83727 3.95570 4.06188 4.13205 4.27967 4.30002 4.36963 4.42085 4.45665 4.46498 4.49302 4.62006 4.76841 4.82595 4.84508 4.87035 4.94718 5.02515 5.11399 5.38525 5.41362 5.44186 5.76799 6.19590 6.27633 6.46413 7.05896 7.08610 7.20893 8.74455 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.002187 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.526001 B =12799.393929 C =13327.994480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.617 5.617 3 C 0.064 3.936 4 C 0.497 3.503 5 O -0.583 6.583 6 C 0.057 3.943 7 H 0.127 0.873 8 C -0.132 4.132 9 C -0.144 4.144 10 C 0.067 3.933 11 H 0.115 0.885 12 C 0.125 3.875 13 N -0.711 5.711 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.129 4.129 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.259 1.259 26 O -0.380 6.380 27 H 0.115 0.885 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.416 0.584 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 36.403 1.500 37.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.352 5.352 3 C -0.077 4.077 4 C 0.285 3.715 5 O -0.463 6.463 6 C -0.003 4.003 7 H 0.144 0.856 8 C -0.170 4.170 9 C -0.182 4.182 10 C 0.010 3.990 11 H 0.132 0.868 12 C 0.002 3.998 13 N -0.364 5.364 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.183 1.183 26 O -0.299 6.299 27 H 0.133 0.867 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.151 0.849 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.253 0.747 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.915 34.699 3.281 35.975 hybrid contribution -0.048 -0.288 -2.142 2.162 sum -8.963 34.410 1.139 35.576 Atomic orbital electron populations 1.21738 0.78602 1.04251 1.01147 1.47891 1.07653 1.06790 1.72856 1.22329 0.98093 0.83398 1.03920 1.21263 0.91029 0.83434 0.75770 1.90734 1.71250 1.33510 1.50781 1.22897 0.89699 0.85480 1.02248 0.85626 1.23010 1.00635 0.99899 0.93408 1.23153 1.02264 0.96064 0.96738 1.23644 0.88287 0.93923 0.93131 0.86773 1.21477 0.99964 0.90031 0.88359 1.45701 1.68558 1.09371 1.12810 1.20092 0.76194 0.82505 0.89382 1.90681 1.53875 1.71034 1.28983 1.23360 1.05624 0.99412 0.99581 1.85565 1.87839 1.03093 1.15983 1.23203 1.52610 0.99216 0.94385 0.89920 1.26171 0.94606 0.96343 1.02210 1.70195 1.46020 1.07931 1.30641 0.84916 0.78893 0.77206 0.76712 1.19023 1.20272 1.18331 1.89113 1.40648 1.28093 1.72061 0.86659 0.93568 0.93636 0.90339 0.89278 0.88681 0.84902 0.90072 0.85994 0.91615 0.88956 0.93589 0.74728 0.87782 0.86722 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.16 127.77 1.30 2.30 16 2 N -0.62 -7.74 3.27 -871.85 -2.85 -10.59 16 3 C 0.06 0.10 9.18 127.77 1.17 1.27 16 4 C 0.50 10.61 6.87 87.65 0.60 11.21 16 5 O -0.58 -20.11 16.53 15.65 0.26 -19.85 16 6 C 0.06 0.83 2.97 30.22 0.09 0.92 16 7 H 0.13 0.98 7.18 -2.38 -0.02 0.97 16 8 C -0.13 -0.91 5.23 31.58 0.17 -0.74 16 9 C -0.14 -1.53 6.59 31.90 0.21 -1.32 16 10 C 0.07 1.09 3.36 31.28 0.11 1.20 16 11 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 12 C 0.13 3.13 5.43 86.38 0.47 3.59 16 13 N -0.71 -20.50 5.56 -463.06 -2.57 -23.07 16 14 C 0.53 21.42 7.85 87.66 0.69 22.11 16 15 O -0.57 -28.09 15.86 -3.03 -0.05 -28.14 16 16 C -0.13 -5.46 6.16 71.24 0.44 -5.02 16 17 S -0.15 -8.81 20.57 -56.49 -1.16 -9.97 16 18 C -0.55 -32.23 9.50 67.95 0.65 -31.59 16 19 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 20 C 0.01 0.66 5.49 84.86 0.47 1.13 16 21 N -0.91 -57.38 13.22 21.65 0.29 -57.09 16 22 Si 1.00 44.75 29.55 68.60 2.03 46.77 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 O -0.38 -8.82 10.47 -130.27 -1.36 -10.18 16 27 H 0.11 0.40 7.79 -2.39 -0.02 0.39 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.08 -0.10 7.86 -2.39 -0.02 -0.12 16 31 H 0.09 -0.12 6.19 -2.39 -0.01 -0.13 16 32 H 0.09 -0.18 7.92 -2.38 -0.02 -0.20 16 33 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.08 0.62 7.34 -2.39 -0.02 0.61 16 35 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.97 8.06 -2.39 -0.02 0.95 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.42 9.41 8.47 -92.70 -0.79 8.63 16 40 H 0.10 4.13 8.14 -2.40 -0.02 4.11 16 41 H 0.11 4.27 8.14 -2.40 -0.02 4.25 16 42 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 Total: -1.00 -95.03 365.35 1.16 -93.87 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.24 Total: 13.19 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.35 Total: 5.06 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -5.14 Total: -90.75 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: -1.15 Total: -58.18 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -95.03 1.16 -93.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330654350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.303 kcal (2) G-P(sol) polarization free energy of solvation -95.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds