Wall clock time and date at job start Fri Apr 10 2020 18:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00467 * 2 1 4 4 O 1.21581 * 120.00175 * 185.75445 * 3 2 1 5 5 N 1.34778 * 119.99626 * 5.76365 * 3 2 1 6 6 C 1.46503 * 119.99788 * 185.38384 * 5 3 2 7 7 C 1.53005 * 109.46761 * 175.01014 * 6 5 3 8 8 C 1.50692 * 115.55114 * 306.46514 * 7 6 5 9 9 H 1.07999 * 119.99870 * 144.18947 * 8 7 6 10 10 C 1.37879 * 120.00152 * 324.19625 * 8 7 6 11 11 N 1.31511 * 119.99842 * 3.31250 * 10 8 7 12 12 Si 1.86800 * 119.99810 * 183.30812 * 10 8 7 13 13 H 1.48498 * 109.47110 * 90.00488 * 12 10 8 14 14 H 1.48510 * 109.47028 * 209.99714 * 12 10 8 15 15 H 1.48496 * 109.47555 * 330.00258 * 12 10 8 16 16 C 1.53005 * 117.49399 * 160.79874 * 7 6 5 17 17 C 1.52997 * 117.49658 * 92.13989 * 7 6 5 18 18 C 1.46503 * 119.99757 * 179.97438 * 2 1 3 19 19 H 1.09003 * 109.53559 * 179.63684 * 18 2 1 20 20 C 1.53875 * 109.65006 * 300.00305 * 18 2 1 21 21 C 1.55046 * 106.66326 * 167.00954 * 20 18 2 22 22 S 1.83321 * 102.55134 * 317.61805 * 21 20 18 23 23 O 1.42098 * 109.31831 * 269.76542 * 22 21 20 24 24 O 1.42100 * 109.49946 * 136.60248 * 22 21 20 25 25 C 1.54164 * 109.64384 * 59.27756 * 18 2 1 26 26 H 1.09003 * 109.46766 * 266.73377 * 1 2 3 27 27 H 1.08999 * 109.46974 * 26.72677 * 1 2 3 28 28 H 1.08998 * 109.47456 * 146.72701 * 1 2 3 29 29 H 0.96996 * 120.00294 * 5.37320 * 5 3 2 30 30 H 1.09006 * 109.46587 * 295.00594 * 6 5 3 31 31 H 1.08992 * 109.47361 * 55.00665 * 6 5 3 32 32 H 0.97007 * 119.99837 * 185.00323 * 11 10 8 33 33 H 1.09001 * 117.50080 * 359.97438 * 16 7 6 34 34 H 1.09000 * 117.49442 * 145.01957 * 16 7 6 35 35 H 1.08996 * 117.49696 * 214.97413 * 17 7 6 36 36 H 1.09003 * 117.50544 * 359.97438 * 17 7 6 37 37 H 1.09006 * 110.02378 * 286.32229 * 20 18 2 38 38 H 1.09002 * 110.02604 * 47.69310 * 20 18 2 39 39 H 1.08998 * 110.79353 * 75.86056 * 21 20 18 40 40 H 1.09001 * 110.78477 * 199.31898 * 21 20 18 41 41 H 1.08995 * 110.31969 * 331.14233 * 25 18 2 42 42 H 1.09004 * 110.32029 * 93.23487 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3502 1.1698 -0.1056 5 7 1.4702 2.3314 0.1172 6 6 2.1876 3.6033 -0.0009 7 6 1.1866 4.7596 0.0455 8 6 0.0537 4.6786 -0.9448 9 1 -0.9299 5.0298 -0.6699 10 6 0.2727 4.1561 -2.2018 11 7 1.4534 3.6686 -2.5146 12 14 -1.1076 4.1404 -3.4603 13 1 -1.0728 5.3983 -4.2487 14 1 -0.9339 2.9805 -4.3712 15 1 -2.4133 4.0301 -2.7617 16 6 1.7279 6.1492 0.3876 17 6 0.8881 5.3811 1.4113 18 6 2.1974 -1.2688 0.0006 19 1 3.2693 -1.0709 -0.0060 20 6 1.8286 -2.0786 1.2559 21 6 2.3638 -3.5162 1.0307 22 16 1.9201 -3.8371 -0.7188 23 8 0.6278 -4.4252 -0.7758 24 8 3.0122 -4.4629 -1.3781 25 6 1.8142 -2.0890 -1.2472 26 1 -0.3633 -0.0586 1.0260 27 1 -0.3633 0.9179 -0.4622 28 1 -0.3634 -0.8592 -0.5638 29 1 0.5139 2.3273 0.2797 30 1 2.8933 3.7003 0.8241 31 1 2.7286 3.6288 -0.9468 32 1 1.6296 3.3677 -3.4199 33 1 2.7970 6.2395 0.5800 34 1 1.2642 7.0048 -0.1033 35 1 -0.1277 5.7317 1.5934 36 1 1.4044 4.9660 2.2769 37 1 2.2988 -1.6387 2.1354 38 1 0.7461 -2.0988 1.3823 39 1 3.4445 -3.5528 1.1683 40 1 1.8642 -4.2232 1.6931 41 1 0.7981 -1.8491 -1.5604 42 1 2.5156 -1.8941 -2.0585 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341077854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:47 Heat of formation + Delta-G solvation = -81.839716 kcal Electronic energy + Delta-G solvation = -25507.508883 eV Core-core repulsion = 21808.536751 eV Total energy + Delta-G solvation = -3698.972132 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18328 -38.81825 -38.12803 -37.77645 -37.07942 -35.22475 -34.23839 -33.85395 -30.62050 -28.05134 -27.77059 -27.16806 -25.50390 -22.97841 -22.41939 -21.10919 -20.44182 -19.83825 -19.37638 -18.06156 -17.84360 -17.48623 -16.97240 -16.75945 -16.58901 -16.31106 -15.73579 -15.21397 -15.06587 -15.04329 -14.86552 -14.25267 -14.20697 -13.59451 -13.46520 -13.36920 -13.28906 -13.16989 -13.15934 -13.07101 -12.93432 -12.87088 -12.54175 -12.30148 -12.13145 -12.01483 -11.75912 -11.51466 -11.30018 -11.05175 -10.83190 -10.64533 -10.14318 -9.88451 -9.32160 -7.93665 -6.18138 -0.95043 1.40884 1.46730 1.48662 1.52902 1.88234 2.34493 2.41906 2.63398 2.99989 3.06299 3.26942 3.44679 3.62472 3.69363 3.71594 3.91012 4.05170 4.26436 4.30660 4.52629 4.57030 4.59359 4.67999 4.77621 4.80050 4.85002 4.91784 4.98801 5.00297 5.07268 5.15103 5.30315 5.55375 5.60285 5.62709 5.95550 6.00771 6.10944 6.39956 6.83708 7.28236 7.46988 7.82118 8.93011 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.003897 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.585847 B = 7183.161535 C = 7996.582982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.623 5.623 3 C 0.699 3.301 4 O -0.646 6.646 5 N -0.694 5.694 6 C 0.196 3.804 7 C 0.008 3.992 8 C -0.500 4.500 9 H 0.059 0.941 10 C 0.039 3.961 11 N -0.888 5.888 12 Si 0.943 3.057 13 H -0.285 1.285 14 H -0.293 1.293 15 H -0.262 1.262 16 C -0.201 4.201 17 C -0.184 4.184 18 C 0.158 3.842 19 H 0.103 0.897 20 C -0.128 4.128 21 C -0.552 4.552 22 S 2.409 3.591 23 O -0.966 6.966 24 O -0.978 6.978 25 C -0.612 4.612 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.401 0.599 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.254 0.746 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.148 0.852 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -12.783 8.889 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.360 5.360 3 C 0.401 3.599 4 O -0.529 6.529 5 N -0.345 5.345 6 C 0.071 3.929 7 C 0.007 3.993 8 C -0.537 4.537 9 H 0.077 0.923 10 C -0.162 4.162 11 N -0.525 5.525 12 Si 0.770 3.230 13 H -0.211 1.211 14 H -0.219 1.219 15 H -0.186 1.186 16 C -0.240 4.240 17 C -0.221 4.221 18 C 0.052 3.948 19 H 0.121 0.879 20 C -0.168 4.168 21 C -0.686 4.686 22 S 2.595 3.405 23 O -0.963 6.963 24 O -0.975 6.975 25 C -0.741 4.741 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.237 0.763 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.177 0.823 40 H 0.190 0.810 41 H 0.166 0.834 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.980 -13.738 8.109 16.075 hybrid contribution -0.710 1.276 -0.872 1.701 sum -2.689 -12.462 7.237 14.660 Atomic orbital electron populations 1.22028 0.78286 1.03946 1.03799 1.46843 1.07078 1.03361 1.78724 1.16072 0.84848 0.81328 0.77700 1.90782 1.14240 1.86921 1.60973 1.44758 1.11817 1.03815 1.74139 1.20562 0.92476 0.80901 0.98976 1.19282 0.96389 0.90052 0.93529 1.20676 0.94779 1.40786 0.97503 0.92317 1.25526 0.97148 0.93847 0.99726 1.70096 1.22592 1.41033 1.18779 0.85786 0.80735 0.76978 0.79487 1.21126 1.21923 1.18605 1.22961 0.97735 0.97855 1.05414 1.22944 0.99862 1.06184 0.93158 1.21364 0.98974 0.82911 0.91528 0.87918 1.22619 1.04608 0.91009 0.98531 1.30433 1.13332 1.04836 1.19968 1.08370 0.74161 0.77190 0.80784 1.93575 1.40663 1.75021 1.87020 1.93563 1.55347 1.73995 1.74619 1.30991 1.12602 1.22789 1.07763 0.89595 0.91945 0.88899 0.76301 0.96928 0.90890 0.93621 0.90721 0.90503 0.89713 0.89721 0.87042 0.87113 0.82337 0.81014 0.83388 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.37 8.97 127.77 1.15 2.52 16 2 N -0.62 -18.04 2.78 -836.73 -2.33 -20.37 16 3 C 0.70 28.17 8.26 179.05 1.48 29.64 16 4 O -0.65 -31.02 15.70 -3.97 -0.06 -31.08 16 5 N -0.69 -28.61 4.82 -478.53 -2.31 -30.92 16 6 C 0.20 9.12 4.61 86.38 0.40 9.52 16 7 C 0.01 0.37 2.04 -52.93 -0.11 0.26 16 8 C -0.50 -24.11 8.40 25.60 0.22 -23.89 16 9 H 0.06 2.80 7.82 -2.91 -0.02 2.78 16 10 C 0.04 1.93 5.29 84.66 0.45 2.38 16 11 N -0.89 -46.91 10.18 21.45 0.22 -46.69 16 12 Si 0.94 39.88 29.54 68.60 2.03 41.90 16 13 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 16 C -0.20 -8.32 9.96 30.62 0.30 -8.02 16 17 C -0.18 -6.99 9.92 30.62 0.30 -6.69 16 18 C 0.16 3.59 2.95 45.68 0.13 3.73 16 19 H 0.10 2.75 6.92 -2.39 -0.02 2.73 16 20 C -0.13 -1.72 5.93 31.59 0.19 -1.53 16 21 C -0.55 -5.33 7.31 72.68 0.53 -4.80 16 22 S 2.41 42.49 6.10 -56.49 -0.34 42.15 16 23 O -0.97 -22.49 18.14 -127.47 -2.31 -24.81 16 24 O -0.98 -25.18 18.15 -127.47 -2.31 -27.50 16 25 C -0.61 -12.28 6.81 72.38 0.49 -11.79 16 26 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 27 H 0.06 1.69 6.53 -2.39 -0.02 1.67 16 28 H 0.09 1.60 6.27 -2.39 -0.01 1.58 16 29 H 0.40 15.24 6.01 -92.71 -0.56 14.68 16 30 H 0.01 0.58 8.08 -2.38 -0.02 0.56 16 31 H 0.07 4.02 5.97 -2.39 -0.01 4.00 16 32 H 0.25 13.38 8.32 -92.70 -0.77 12.60 16 33 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.11 1.09 7.33 -2.39 -0.02 1.08 16 39 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.15 2.75 6.12 -2.39 -0.01 2.74 16 42 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -73.75 349.77 -1.41 -75.16 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.48 Total: 30.82 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 5.53 Total: -8.67 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.42 Total: -97.99 kcal Atomic # 8 Polarization: -78.70 SS G_CDS: -4.69 Total: -83.38 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Atomic # 16 Polarization: 42.49 SS G_CDS: -0.34 Total: 42.15 kcal Total: -73.75 -1.41 -75.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341077854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.676 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds