Wall clock time and date at job start Fri Apr 10 2020 18:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38498 * 120.00046 * 179.72196 * 2 1 3 5 5 C 1.39798 * 120.00124 * 4.73005 * 4 2 1 6 6 N 1.31529 * 120.00921 * 179.70437 * 5 4 2 7 7 C 1.33193 * 120.01166 * 0.56799 * 6 5 4 8 8 C 1.48086 * 120.00186 * 179.72711 * 7 6 5 9 9 O 1.21871 * 119.99811 * 179.97438 * 8 7 6 10 10 N 1.33717 * 120.00296 * 359.97438 * 8 7 6 11 11 C 1.33043 * 120.00360 * 179.97438 * 10 8 7 12 12 C 1.41099 * 126.37248 * 0.02594 * 11 10 8 13 13 C 1.35059 * 108.24204 * 179.97438 * 12 11 10 14 14 N 1.36392 * 108.93026 * 0.02562 * 13 12 11 15 15 C 1.46505 * 125.85243 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47121 * 84.97846 * 15 14 13 17 17 H 1.07999 * 119.99833 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99879 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00245 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99810 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47673 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47287 * 119.99989 * 20 18 16 23 23 H 1.48502 * 109.47366 * 239.99628 * 20 18 16 24 24 N 1.37409 * 126.36982 * 179.71439 * 11 10 8 25 25 H 0.97000 * 126.36286 * 0.02562 * 24 11 10 26 26 C 1.39349 * 120.00041 * 359.70869 * 7 6 5 27 27 N 1.32059 * 119.98651 * 359.97438 * 26 7 6 28 28 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 29 29 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 30 30 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 31 31 H 1.09003 * 109.47269 * 89.99349 * 3 2 1 32 32 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 33 33 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 34 34 H 1.07997 * 119.99754 * 359.97438 * 5 4 2 35 35 H 1.08006 * 125.88117 * 359.96818 * 12 11 10 36 36 H 1.08000 * 125.53644 * 179.97438 * 13 12 11 37 37 H 1.09007 * 109.46799 * 204.97784 * 15 14 13 38 38 H 1.08994 * 109.47072 * 324.97131 * 15 14 13 39 39 H 0.97003 * 120.00092 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.00958 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1576 -1.1994 0.0058 5 6 1.4622 -2.4085 -0.0881 6 7 2.1201 -3.5474 -0.0885 7 6 3.4482 -3.5496 0.0121 8 6 4.1882 -4.8323 0.0178 9 8 5.4035 -4.8342 0.1093 10 7 3.5231 -5.9884 -0.0776 11 6 4.1880 -7.1408 -0.0730 12 6 5.5866 -7.2995 0.0262 13 6 5.8653 -8.6207 -0.0044 14 7 4.6980 -9.3166 -0.1202 15 6 4.5713 -10.7746 -0.1874 16 6 4.5449 -11.3415 1.2086 17 1 4.6158 -10.6817 2.0607 18 6 4.4301 -12.7023 1.3980 19 7 4.3433 -13.5057 0.3604 20 14 4.3981 -13.4050 3.1285 21 1 4.5096 -12.2997 4.1139 22 1 3.1214 -14.1324 3.3439 23 1 5.5370 -14.3417 3.3036 24 7 3.6401 -8.3980 -0.1580 25 1 2.6966 -8.6103 -0.2328 26 6 4.1414 -2.3449 0.1116 27 7 3.4813 -1.2011 0.1056 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.3791 1.5835 1.0277 32 1 3.1499 1.1384 -0.5138 33 1 1.6084 2.0284 -0.5138 34 1 0.3849 -2.4073 -0.1649 35 1 6.3097 -6.5019 0.1118 36 1 6.8523 -9.0555 0.0525 37 1 3.6471 -11.0356 -0.7032 38 1 5.4203 -11.1884 -0.7316 39 1 4.2622 -14.4631 0.4936 40 1 5.2184 -2.3465 0.1927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355177411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:48 Heat of formation + Delta-G solvation = 115.666429 kcal Electronic energy + Delta-G solvation = -24527.229275 eV Core-core repulsion = 20765.963203 eV Total energy + Delta-G solvation = -3761.266072 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.34750 -42.01431 -39.77227 -37.84967 -35.94899 -35.12449 -34.56828 -32.53136 -32.39750 -31.72579 -29.29880 -28.59929 -27.20617 -25.25719 -24.95645 -23.89081 -22.81761 -22.62824 -20.99054 -19.03069 -18.78118 -18.46657 -18.17517 -17.36536 -16.76573 -16.68657 -16.62641 -16.29288 -15.85171 -15.70680 -15.45062 -15.36562 -14.78978 -14.61068 -14.34963 -14.19946 -14.10832 -13.66624 -13.40847 -13.23616 -13.08322 -12.88539 -12.75612 -12.35939 -12.33575 -12.27165 -12.04525 -11.21675 -11.11021 -11.03182 -10.77503 -10.51070 -10.15006 -9.80161 -8.81032 -8.53797 -8.24137 -6.55928 -0.42267 0.16433 0.40953 0.59091 1.37275 1.42732 1.52112 1.58339 1.79131 2.30762 2.57544 2.70525 2.94730 3.18141 3.26090 3.34152 3.47275 3.66631 3.91168 4.15631 4.24872 4.35204 4.42071 4.49710 4.52454 4.60479 4.78826 4.82051 4.85971 4.93293 4.94234 5.01002 5.24094 5.28097 5.51839 5.70217 5.73635 5.96542 6.04008 6.11676 6.40152 6.48768 6.60847 6.75685 6.91671 7.17837 7.84158 8.66471 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.029261 B = 0.002183 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.668303 B =12826.107531 C =13218.513992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.597 5.597 3 C 0.092 3.908 4 C 0.361 3.639 5 C -0.010 4.010 6 N -0.374 5.374 7 C -0.039 4.039 8 C 0.544 3.456 9 O -0.601 6.601 10 N -0.688 5.688 11 C 0.450 3.550 12 C -0.344 4.344 13 C 0.180 3.820 14 N -0.343 5.343 15 C 0.265 3.735 16 C -0.565 4.565 17 H 0.059 0.941 18 C 0.030 3.970 19 N -0.912 5.912 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.273 1.273 24 N -0.462 5.462 25 H 0.452 0.548 26 C 0.156 3.844 27 N -0.522 5.522 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.198 0.802 35 H 0.178 0.822 36 H 0.228 0.772 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.274 0.726 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 21.690 -1.876 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.308 5.308 3 C -0.050 4.050 4 C 0.118 3.882 5 C -0.184 4.184 6 N -0.089 5.089 7 C -0.178 4.178 8 C 0.330 3.670 9 O -0.484 6.484 10 N -0.452 5.452 11 C 0.201 3.799 12 C -0.375 4.375 13 C 0.035 3.965 14 N -0.128 5.128 15 C 0.148 3.852 16 C -0.603 4.603 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.550 5.550 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.198 1.198 24 N -0.184 5.184 25 H 0.301 0.699 26 C -0.005 4.005 27 N -0.246 5.246 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.214 0.786 35 H 0.195 0.805 36 H 0.245 0.755 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.405 21.352 -1.993 22.381 hybrid contribution 0.174 -0.815 0.825 1.173 sum -6.231 20.537 -1.168 21.493 Atomic orbital electron populations 1.22147 0.75410 1.05046 1.03526 1.46578 1.07010 1.02276 1.74950 1.21788 0.97484 0.83547 1.02210 1.19928 0.89675 0.88814 0.89735 1.23831 1.02585 0.86064 1.05909 1.68277 1.08111 1.29206 1.03327 1.21305 0.90943 0.94506 1.11075 1.18627 0.84942 0.87288 0.76164 1.90579 1.16619 1.89414 1.51831 1.68950 1.38024 0.95246 1.42941 1.19449 0.89963 0.85116 0.85422 1.22444 0.95655 0.97045 1.22392 1.23461 0.91306 0.91497 0.90234 1.47974 0.98173 1.03889 1.62719 1.19806 1.00500 0.66865 0.97983 1.21626 1.53592 0.92681 0.92411 0.92237 1.25594 0.93669 0.96887 1.01110 1.69965 1.48633 1.05011 1.31399 0.85399 0.78048 0.78286 0.79320 1.19810 1.20483 1.19809 1.44595 1.04836 0.99833 1.69153 0.69932 1.23466 1.01701 0.86067 0.89225 1.68122 1.07199 1.28856 1.20429 0.90828 0.90211 0.88068 0.92594 0.91933 0.88331 0.78551 0.80452 0.75525 0.93778 0.90697 0.91687 0.80187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.07 127.77 1.29 1.87 16 2 N -0.60 -9.31 3.38 -753.48 -2.54 -11.85 16 3 C 0.09 1.12 10.42 127.77 1.33 2.45 16 4 C 0.36 8.66 7.36 133.29 0.98 9.64 16 5 C -0.01 -0.25 10.34 85.12 0.88 0.63 16 6 N -0.37 -12.96 10.21 -183.67 -1.87 -14.84 16 7 C -0.04 -1.46 6.75 41.82 0.28 -1.17 16 8 C 0.54 23.27 7.72 87.02 0.67 23.95 16 9 O -0.60 -26.49 13.26 -4.90 -0.06 -26.55 16 10 N -0.69 -29.79 10.30 -311.21 -3.20 -33.00 16 11 C 0.45 18.20 8.07 133.89 1.08 19.28 16 12 C -0.34 -12.80 9.52 22.24 0.21 -12.59 16 13 C 0.18 5.83 11.45 83.25 0.95 6.78 16 14 N -0.34 -12.48 3.63 -350.80 -1.27 -13.75 16 15 C 0.27 10.82 6.19 85.63 0.53 11.35 16 16 C -0.56 -26.40 9.39 25.60 0.24 -26.16 16 17 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 18 C 0.03 1.43 5.46 84.65 0.46 1.89 16 19 N -0.91 -45.67 13.29 21.45 0.28 -45.39 16 20 Si 0.96 38.99 29.54 68.60 2.03 41.01 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 N -0.46 -16.91 7.38 -54.80 -0.40 -17.32 16 25 H 0.45 14.92 8.96 -213.28 -1.91 13.01 16 26 C 0.16 5.00 10.76 84.93 0.91 5.91 16 27 N -0.52 -14.76 9.31 -191.78 -1.79 -16.55 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.08 0.55 6.36 -2.39 -0.02 0.53 16 30 H 0.10 0.28 8.07 -2.39 -0.02 0.26 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 1.00 7.46 -2.39 -0.02 0.98 16 33 H 0.10 0.58 8.07 -2.38 -0.02 0.57 16 34 H 0.20 3.39 6.25 -2.91 -0.02 3.37 16 35 H 0.18 6.90 5.77 -2.91 -0.02 6.88 16 36 H 0.23 5.31 8.06 -2.91 -0.02 5.29 16 37 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 40 H 0.18 5.40 7.63 -2.91 -0.02 5.38 16 Total: -1.00 -68.30 350.43 0.17 -68.13 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -0.81 Total: 26.27 kcal Atomic # 6 Polarization: 34.00 SS G_CDS: 9.83 Total: 43.83 kcal Atomic # 7 Polarization: -141.89 SS G_CDS: -10.80 Total: -152.70 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.06 Total: -26.55 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.01 kcal Total: -68.30 0.17 -68.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355177411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.800 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds