Wall clock time and date at job start Fri Apr 10 2020 18:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00029 * 2 1 4 4 C 1.52998 * 109.47586 * 89.99702 * 3 2 1 5 5 H 1.09006 * 109.46913 * 59.99775 * 4 3 2 6 6 O 1.42897 * 109.47275 * 300.00178 * 4 3 2 7 7 C 1.52998 * 109.47273 * 179.97438 * 4 3 2 8 8 N 1.46506 * 109.46732 * 184.99963 * 7 4 3 9 9 C 1.34778 * 119.99420 * 179.97438 * 8 7 4 10 10 O 1.21277 * 120.00426 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99906 * 179.97438 * 9 8 7 12 12 C 1.52995 * 117.50181 * 248.75034 * 11 9 8 13 13 C 1.52993 * 117.50081 * 180.08799 * 11 9 8 14 14 C 1.34783 * 119.99947 * 179.97438 * 2 1 3 15 15 O 1.21274 * 119.99838 * 180.02562 * 14 2 1 16 16 C 1.50701 * 119.99798 * 0.02562 * 14 2 1 17 17 S 1.81003 * 109.46927 * 179.97438 * 16 14 2 18 18 C 1.76202 * 99.99868 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99900 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99925 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00050 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99987 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47601 * 90.00098 * 22 20 18 24 24 H 1.48500 * 109.47322 * 210.00398 * 22 20 18 25 25 H 1.48505 * 109.47146 * 329.99858 * 22 20 18 26 26 H 1.09002 * 109.47069 * 90.00440 * 1 2 3 27 27 H 1.09001 * 109.47646 * 210.00216 * 1 2 3 28 28 H 1.08999 * 109.47128 * 330.00595 * 1 2 3 29 29 H 1.08994 * 109.47254 * 329.99229 * 3 2 1 30 30 H 1.09001 * 109.47234 * 209.99645 * 3 2 1 31 31 H 0.96706 * 113.99886 * 300.00083 * 6 4 3 32 32 H 1.08998 * 109.47105 * 64.99926 * 7 4 3 33 33 H 1.09000 * 109.47167 * 304.99837 * 7 4 3 34 34 H 0.96991 * 120.00407 * 0.02562 * 8 7 4 35 35 H 1.08998 * 115.54512 * 34.41796 * 11 9 8 36 36 H 1.09000 * 117.49859 * 0.02562 * 12 11 9 37 37 H 1.08999 * 117.49900 * 145.01759 * 12 11 9 38 38 H 1.08998 * 117.50372 * 214.98309 * 13 11 9 39 39 H 1.09006 * 117.50059 * 359.97438 * 13 11 9 40 40 H 1.08997 * 109.47599 * 299.99952 * 16 14 2 41 41 H 1.08999 * 109.47229 * 59.99968 * 16 14 2 42 42 H 0.97006 * 119.99823 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4424 5 1 3.0415 0.9508 1.9563 6 8 1.2039 1.8814 2.1161 7 6 3.2180 3.0352 1.4424 8 7 3.5663 3.3979 2.8184 9 6 4.2484 4.5342 3.0636 10 8 4.5733 5.2566 2.1453 11 6 4.6062 4.9077 4.4791 12 6 3.9033 6.1223 5.0885 13 6 5.3791 6.2108 4.6920 14 6 2.1389 -1.1673 0.0005 15 8 3.3516 -1.1672 0.0010 16 6 1.3853 -2.4723 0.0005 17 16 2.5615 -3.8481 0.0005 18 6 1.4414 -5.2083 -0.0003 19 1 0.3761 -5.0305 -0.0001 20 6 1.9281 -6.5081 0.0001 21 7 1.0913 -7.5242 0.0000 22 14 3.7706 -6.8155 0.0006 23 1 4.2586 -6.8968 1.4007 24 1 4.0596 -8.0930 -0.6992 25 1 4.4586 -5.7011 -0.6995 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.6085 2.0283 -0.5139 30 1 3.1499 1.1383 -0.5138 31 1 0.6267 2.5441 1.7125 32 1 2.5935 3.8157 1.0078 33 1 4.1288 2.9284 0.8531 34 1 3.3068 2.8199 3.5528 35 1 4.8344 4.0731 5.1420 36 1 3.1817 6.6510 4.4658 37 1 3.6693 6.0870 6.1525 38 1 6.1155 6.2338 5.4953 39 1 5.6292 6.7978 3.8082 40 1 0.7583 -2.5299 0.8902 41 1 0.7590 -2.5303 -0.8897 42 1 1.4315 -8.4326 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756654096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:18 Heat of formation + Delta-G solvation = -97.279583 kcal Electronic energy + Delta-G solvation = -23559.700744 eV Core-core repulsion = 19860.059089 eV Total energy + Delta-G solvation = -3699.641655 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38885 -39.77673 -37.98763 -36.49398 -35.18279 -34.57022 -32.45463 -31.38273 -29.30665 -27.32732 -25.89766 -25.55892 -23.89300 -22.84842 -22.26739 -20.41973 -19.49532 -17.94777 -17.74545 -17.23277 -16.80925 -16.38670 -16.00321 -15.77883 -15.44060 -15.27292 -14.95828 -14.68330 -14.32316 -14.05307 -13.78092 -13.20660 -13.08243 -12.93923 -12.83590 -12.77431 -12.49417 -12.14888 -11.98269 -11.91643 -11.48972 -11.27056 -11.06112 -11.02487 -10.96410 -10.74407 -10.61045 -10.20852 -9.87503 -9.55023 -9.44735 -9.01962 -8.63276 -8.51457 -6.94088 -6.30436 -4.02398 2.15497 2.56071 2.76479 2.89980 3.16886 3.31802 3.44454 3.49027 3.56901 3.98594 4.26911 4.30868 4.32772 4.38020 4.45569 4.54861 4.65963 4.72301 4.77532 4.94695 5.06666 5.08709 5.16334 5.19915 5.28068 5.35916 5.40415 5.50727 5.51480 5.64084 5.69804 5.69949 5.77779 5.99193 6.03320 6.43760 7.13548 7.22178 7.35350 7.88447 7.92565 8.35769 8.40035 9.15699 10.78716 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.002345 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.814340 B =11939.408579 C =12568.828454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.614 5.614 3 C 0.091 3.909 4 C 0.079 3.921 5 H 0.113 0.887 6 O -0.550 6.550 7 C 0.091 3.909 8 N -0.719 5.719 9 C 0.542 3.458 10 O -0.544 6.544 11 C -0.196 4.196 12 C -0.152 4.152 13 C -0.148 4.148 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.120 4.120 17 S -0.144 6.144 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.371 0.629 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.407 0.593 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 26.459 7.098 27.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.350 5.350 3 C -0.034 4.034 4 C 0.018 3.982 5 H 0.131 0.869 6 O -0.355 6.355 7 C -0.034 4.034 8 N -0.370 5.370 9 C 0.329 3.671 10 O -0.421 6.421 11 C -0.217 4.217 12 C -0.190 4.190 13 C -0.185 4.185 14 C 0.320 3.680 15 O -0.394 6.394 16 C -0.271 4.271 17 S 0.082 5.918 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.218 0.782 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.242 0.758 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.306 26.289 6.789 27.249 hybrid contribution -1.211 -0.416 0.002 1.281 sum 1.095 25.873 6.792 26.772 Atomic orbital electron populations 1.21812 0.79062 1.03687 1.01514 1.47645 1.07072 1.04953 1.75295 1.21921 0.99441 0.86129 0.95893 1.22681 0.85295 0.95700 0.94506 0.86922 1.86677 1.28748 1.63490 1.56611 1.22012 1.00785 0.96724 0.83894 1.45792 1.57483 1.24377 1.09391 1.19692 0.77053 0.80549 0.89826 1.90700 1.53939 1.51431 1.46056 1.22199 1.09215 0.94826 0.95500 1.22948 0.96257 0.98249 1.01504 1.22971 0.94507 0.97212 1.03843 1.20363 0.87918 0.84716 0.75012 1.90690 1.13708 1.86863 1.48123 1.23301 1.03076 0.95035 1.05653 1.84781 1.11992 0.97580 1.97422 1.22300 0.94850 0.90864 1.58811 0.89383 1.24717 0.98551 0.94883 0.93190 1.69938 1.34789 0.98878 1.48027 0.86731 0.85347 0.79820 0.79922 1.19221 1.19940 1.15940 0.92791 0.90516 0.90998 0.90028 0.88512 0.78164 0.90998 0.90120 0.75786 0.85713 0.88282 0.87679 0.87824 0.87394 0.88441 0.88501 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 9.98 59.85 0.60 1.35 16 2 N -0.61 -7.55 2.80 -181.58 -0.51 -8.06 16 3 C 0.09 0.87 5.10 -4.05 -0.02 0.85 16 4 C 0.08 0.70 3.27 -26.73 -0.09 0.61 16 5 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 6 O -0.55 -4.41 12.01 -35.23 -0.42 -4.84 16 7 C 0.09 0.76 5.31 -4.04 -0.02 0.73 16 8 N -0.72 -6.09 5.50 -60.29 -0.33 -6.42 16 9 C 0.54 5.50 7.61 -10.98 -0.08 5.42 16 10 O -0.54 -7.51 16.26 5.56 0.09 -7.42 16 11 C -0.20 -1.43 6.19 -91.77 -0.57 -2.00 16 12 C -0.15 -0.91 10.24 -26.70 -0.27 -1.18 16 13 C -0.15 -1.00 10.05 -26.70 -0.27 -1.27 16 14 C 0.53 9.25 7.69 -10.98 -0.08 9.16 16 15 O -0.52 -10.77 15.44 5.56 0.09 -10.69 16 16 C -0.12 -2.30 4.71 36.01 0.17 -2.13 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.41 13.97 55.49 0.78 -25.63 16 22 Si 0.86 21.71 27.74 -169.99 -4.71 16.99 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 28 H 0.07 0.48 6.88 -51.93 -0.36 0.12 16 29 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 30 H 0.10 1.08 7.42 -51.93 -0.39 0.70 16 31 H 0.37 1.66 8.79 45.56 0.40 2.06 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.41 2.90 8.47 -40.82 -0.35 2.55 16 35 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 40 H 0.10 1.76 7.40 -51.92 -0.38 1.38 16 41 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -36.62 369.63 -7.48 -44.09 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.60 Total: 2.40 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.43 Total: -0.38 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.06 Total: -40.11 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.25 Total: -22.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.62 -7.48 -44.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756654096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.186 kcal (2) G-P(sol) polarization free energy of solvation -36.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds