Wall clock time and date at job start Fri Apr 10 2020 18:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00236 * 2 1 4 4 O 1.42907 * 109.46846 * 85.12749 * 3 2 1 5 5 C 1.42901 * 114.00167 * 294.90891 * 4 3 2 6 6 C 1.50698 * 109.47052 * 205.12401 * 3 2 1 7 7 O 1.21284 * 119.99892 * 238.07612 * 6 3 2 8 8 N 1.34778 * 119.99976 * 58.35924 * 6 3 2 9 9 C 1.46497 * 119.99822 * 354.70921 * 8 6 3 10 10 C 1.50705 * 109.47075 * 88.89128 * 9 8 6 11 11 H 1.07999 * 120.00030 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99858 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99668 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00142 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47217 * 90.00195 * 14 12 10 16 16 H 1.48501 * 109.47312 * 210.00320 * 14 12 10 17 17 H 1.48499 * 109.47213 * 330.00676 * 14 12 10 18 18 C 1.46500 * 119.99932 * 174.71337 * 8 6 3 19 19 C 1.52994 * 109.47321 * 89.99869 * 18 8 6 20 20 N 1.46894 * 109.47315 * 179.97438 * 19 18 8 21 21 C 1.47010 * 111.00317 * 293.63510 * 20 19 18 22 22 C 1.53096 * 109.26195 * 177.60744 * 21 20 19 23 23 O 1.43007 * 109.25994 * 56.84823 * 22 21 20 24 24 C 1.43021 * 113.73899 * 301.32970 * 23 22 21 25 25 C 1.47012 * 111.00359 * 169.99723 * 20 19 18 26 26 H 1.09004 * 109.46417 * 305.97619 * 1 2 3 27 27 H 1.09003 * 109.46766 * 65.97282 * 1 2 3 28 28 H 1.09001 * 109.47543 * 185.97706 * 1 2 3 29 29 H 1.09000 * 109.47337 * 325.12979 * 3 2 1 30 30 H 1.09000 * 109.46765 * 309.54299 * 5 4 3 31 31 H 1.08998 * 109.47092 * 69.53990 * 5 4 3 32 32 H 1.08997 * 109.47350 * 189.54413 * 5 4 3 33 33 H 1.08993 * 109.47349 * 208.88834 * 9 8 6 34 34 H 1.09001 * 109.47459 * 328.88919 * 9 8 6 35 35 H 0.96995 * 120.00087 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.46976 * 209.99806 * 18 8 6 37 37 H 1.09000 * 109.46874 * 329.99315 * 18 8 6 38 38 H 1.09001 * 109.47044 * 299.99895 * 19 18 8 39 39 H 1.09006 * 109.47299 * 59.99555 * 19 18 8 40 40 H 1.09001 * 109.50651 * 297.54122 * 21 20 19 41 41 H 1.08998 * 109.50851 * 57.67038 * 21 20 19 42 42 H 1.08998 * 109.50425 * 296.90965 * 22 21 20 43 43 H 1.09006 * 109.54376 * 176.80845 * 22 21 20 44 44 H 1.08995 * 109.50454 * 298.73894 * 24 23 22 45 45 H 1.08998 * 109.53933 * 178.62373 * 24 23 22 46 46 H 1.09002 * 109.51075 * 302.33434 * 25 20 19 47 47 H 1.09005 * 109.50242 * 62.41433 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.0995 1.7870 1.3425 5 6 0.8330 1.9956 1.9706 6 6 3.3898 1.2410 -0.6032 7 8 4.3505 1.6076 0.0398 8 7 3.5552 0.7812 -1.8594 9 6 2.4123 0.2364 -2.5963 10 6 1.7170 1.3483 -3.3388 11 1 2.0890 2.3598 -3.2684 12 6 0.6054 1.0745 -4.1072 13 7 -0.0016 2.0450 -4.7547 14 14 -0.0384 -0.6748 -4.2284 15 1 -1.0319 -0.9125 -3.1506 16 1 -0.6850 -0.8738 -5.5504 17 1 1.0900 -1.6289 -4.0806 18 6 4.8779 0.8264 -2.4876 19 6 5.6298 -0.4717 -2.1871 20 7 6.9558 -0.4267 -2.8176 21 6 6.8426 -0.4272 -4.2833 22 6 8.2407 -0.3195 -4.8979 23 8 9.0514 -1.3950 -4.4172 24 6 9.1838 -1.4244 -2.9934 25 6 7.7952 -1.5433 -2.3596 26 1 -0.3632 0.6037 0.8317 27 1 -0.3633 0.4185 -0.9387 28 1 -0.3634 -1.0221 0.1070 29 1 1.3879 1.9803 -0.5875 30 1 0.1985 2.5958 1.3184 31 1 0.3563 1.0330 2.1556 32 1 0.9780 2.5170 2.9166 33 1 2.7619 -0.5121 -3.3073 34 1 1.7152 -0.2248 -1.8967 35 1 -0.7834 1.8524 -5.2955 36 1 4.7643 0.9392 -3.5658 37 1 5.4398 1.6720 -2.0911 38 1 5.7434 -0.5845 -1.1089 39 1 5.0678 -1.3173 -2.5837 40 1 6.3711 -1.3535 -4.6117 41 1 6.2385 0.4222 -4.6021 42 1 8.6911 0.6313 -4.6131 43 1 8.1670 -0.3765 -5.9840 44 1 9.6616 -0.5058 -2.6533 45 1 9.7917 -2.2807 -2.7014 46 1 7.8865 -1.5087 -1.2740 47 1 7.3385 -2.4875 -2.6565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692627181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:42 Heat of formation + Delta-G solvation = -142.329114 kcal Electronic energy + Delta-G solvation = -28605.685925 eV Core-core repulsion = 24597.171000 eV Total energy + Delta-G solvation = -4008.514926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.95782 -39.47593 -38.03634 -36.22819 -35.81118 -34.74098 -32.65189 -31.27125 -30.26882 -28.81150 -27.81987 -26.30327 -25.72133 -24.70672 -24.04667 -22.58895 -21.96068 -20.35594 -18.97440 -17.41368 -17.30622 -16.87982 -16.58528 -16.49292 -16.16229 -15.42681 -15.24210 -15.08050 -14.72091 -14.68894 -14.30102 -14.19653 -13.84366 -13.62029 -13.41512 -13.26244 -12.99117 -12.72673 -12.42493 -12.35008 -12.06145 -11.88929 -11.57836 -11.50043 -11.40902 -11.17463 -10.97165 -10.84303 -10.71086 -10.45611 -10.28245 -9.79842 -9.72001 -9.71114 -9.53882 -9.16626 -8.79447 -8.38639 -7.85190 -6.31117 -4.32601 2.85951 3.07380 3.16579 3.20624 3.23082 3.73406 3.88175 4.17611 4.19546 4.44937 4.83004 4.95654 4.98353 5.00890 5.07378 5.10253 5.22432 5.30128 5.32266 5.41086 5.46050 5.50574 5.51299 5.52401 5.59370 5.65399 5.73854 5.78078 5.78641 5.90771 5.92247 5.97763 6.17509 6.35254 6.39981 6.76029 6.95862 6.97545 7.07712 7.08511 7.19223 7.31837 7.37584 7.97100 8.29526 8.70017 8.77478 9.28250 10.81141 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.004565 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.319241 B = 6132.502299 C = 7762.551113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.379 6.379 3 C 0.236 3.764 4 O -0.373 6.373 5 C 0.021 3.979 6 C 0.541 3.459 7 O -0.535 6.535 8 N -0.577 5.577 9 C 0.189 3.811 10 C -0.545 4.545 11 H 0.078 0.922 12 C 0.078 3.922 13 N -0.889 5.889 14 Si 0.867 3.133 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.263 1.263 18 C 0.128 3.872 19 C 0.043 3.957 20 N -0.533 5.533 21 C 0.011 3.989 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.019 3.981 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.059 0.941 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.043 0.957 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -5.826 5.053 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.299 6.299 3 C 0.138 3.862 4 O -0.293 6.293 5 C -0.075 4.075 6 C 0.326 3.674 7 O -0.413 6.413 8 N -0.309 5.309 9 C 0.068 3.932 10 C -0.584 4.584 11 H 0.096 0.904 12 C -0.125 4.125 13 N -0.527 5.527 14 Si 0.693 3.307 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.188 1.188 18 C 0.004 3.996 19 C -0.085 4.085 20 N -0.258 5.258 21 C -0.117 4.117 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.855 -5.421 5.356 10.945 hybrid contribution -1.803 -1.285 -0.458 2.261 sum 6.052 -6.706 4.898 10.276 Atomic orbital electron populations 1.23292 0.80680 1.03211 1.01750 1.88004 1.20399 1.28164 1.93351 1.23119 0.94027 0.84816 0.84269 1.88098 1.28887 1.84307 1.28002 1.23031 0.86090 1.00222 0.98153 1.19373 0.88250 0.77888 0.81882 1.90664 1.40490 1.48833 1.61308 1.47695 1.10068 1.59798 1.13375 1.20246 0.84628 0.95350 0.92945 1.21431 1.12076 0.95608 1.29256 0.90369 1.24839 0.96153 0.96796 0.94758 1.69889 1.20546 1.31872 1.30353 0.87004 0.79930 0.85609 0.78156 1.19693 1.20890 1.18797 1.21247 0.82722 0.97254 0.98354 1.22508 0.87800 0.98249 0.99961 1.62120 1.14104 1.43467 1.06143 1.22898 0.98232 1.02393 0.88195 1.22679 0.89500 0.90316 0.98735 1.87955 1.70551 1.50922 1.21357 1.22645 0.95483 1.02242 0.80818 1.22766 0.94582 0.92650 1.00992 0.92985 0.92101 0.89554 0.88628 0.93627 0.93123 0.89512 0.94990 0.92345 0.92308 0.90014 0.89731 0.90215 0.94464 0.93834 0.88790 0.92169 0.88472 0.92221 0.88691 0.89607 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.06 101.05 1.02 1.12 16 2 O -0.38 -7.10 8.07 -59.04 -0.48 -7.57 16 3 C 0.24 4.68 2.56 36.00 0.09 4.77 16 4 O -0.37 -7.08 10.16 -66.27 -0.67 -7.76 16 5 C 0.02 0.29 9.52 101.05 0.96 1.25 16 6 C 0.54 11.76 7.43 -10.99 -0.08 11.68 16 7 O -0.54 -12.62 16.13 -14.35 -0.23 -12.85 16 8 N -0.58 -11.98 2.46 -175.06 -0.43 -12.41 16 9 C 0.19 4.15 3.97 -5.19 -0.02 4.13 16 10 C -0.55 -13.80 9.66 -34.44 -0.33 -14.13 16 11 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 12 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.89 -24.79 13.96 55.43 0.77 -24.02 16 14 Si 0.87 19.18 27.47 -169.99 -4.67 14.51 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 18 C 0.13 2.32 5.30 -4.04 -0.02 2.30 16 19 C 0.04 0.70 5.28 -3.83 -0.02 0.68 16 20 N -0.53 -7.53 4.73 -234.32 -1.11 -8.64 16 21 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 22 C 0.06 0.74 7.01 37.21 0.26 1.00 16 23 O -0.39 -4.95 10.83 -35.23 -0.38 -5.33 16 24 C 0.07 0.71 7.01 37.21 0.26 0.97 16 25 C 0.02 0.23 5.64 -3.71 -0.02 0.20 16 26 H 0.05 0.67 4.46 -51.93 -0.23 0.43 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 1.93 7.56 -51.93 -0.39 1.54 16 30 H 0.05 0.57 7.93 -51.93 -0.41 0.16 16 31 H 0.05 0.63 5.96 -51.93 -0.31 0.32 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.03 0.70 7.12 -51.93 -0.37 0.33 16 34 H 0.06 1.27 4.13 -51.93 -0.21 1.06 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.08 1.46 6.45 -51.93 -0.33 1.12 16 37 H 0.08 1.60 7.50 -51.93 -0.39 1.21 16 38 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 39 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -31.02 370.29 -7.28 -38.29 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.64 Total: 4.17 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 1.98 Total: 16.03 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.76 Total: -45.07 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.76 Total: -33.51 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.67 Total: 14.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.02 -7.28 -38.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692627181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.036 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds