Wall clock time and date at job start Fri Apr 10 2020 18:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00236 * 2 1 4 4 O 1.42907 * 109.46846 * 85.12749 * 3 2 1 5 5 C 1.42901 * 114.00167 * 294.90891 * 4 3 2 6 6 C 1.50698 * 109.47052 * 205.12401 * 3 2 1 7 7 O 1.21284 * 119.99892 * 238.07612 * 6 3 2 8 8 N 1.34778 * 119.99976 * 58.35924 * 6 3 2 9 9 C 1.46497 * 119.99822 * 354.70921 * 8 6 3 10 10 C 1.50705 * 109.47075 * 88.89128 * 9 8 6 11 11 H 1.07999 * 120.00030 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99858 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99668 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00142 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47217 * 90.00195 * 14 12 10 16 16 H 1.48501 * 109.47312 * 210.00320 * 14 12 10 17 17 H 1.48499 * 109.47213 * 330.00676 * 14 12 10 18 18 C 1.46500 * 119.99932 * 174.71337 * 8 6 3 19 19 C 1.52994 * 109.47321 * 89.99869 * 18 8 6 20 20 N 1.46894 * 109.47315 * 179.97438 * 19 18 8 21 21 C 1.47010 * 111.00317 * 293.63510 * 20 19 18 22 22 C 1.53096 * 109.26195 * 177.60744 * 21 20 19 23 23 O 1.43007 * 109.25994 * 56.84823 * 22 21 20 24 24 C 1.43021 * 113.73899 * 301.32970 * 23 22 21 25 25 C 1.47012 * 111.00359 * 169.99723 * 20 19 18 26 26 H 1.09004 * 109.46417 * 305.97619 * 1 2 3 27 27 H 1.09003 * 109.46766 * 65.97282 * 1 2 3 28 28 H 1.09001 * 109.47543 * 185.97706 * 1 2 3 29 29 H 1.09000 * 109.47337 * 325.12979 * 3 2 1 30 30 H 1.09000 * 109.46765 * 309.54299 * 5 4 3 31 31 H 1.08998 * 109.47092 * 69.53990 * 5 4 3 32 32 H 1.08997 * 109.47350 * 189.54413 * 5 4 3 33 33 H 1.08993 * 109.47349 * 208.88834 * 9 8 6 34 34 H 1.09001 * 109.47459 * 328.88919 * 9 8 6 35 35 H 0.96995 * 120.00087 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.46976 * 209.99806 * 18 8 6 37 37 H 1.09000 * 109.46874 * 329.99315 * 18 8 6 38 38 H 1.09001 * 109.47044 * 299.99895 * 19 18 8 39 39 H 1.09006 * 109.47299 * 59.99555 * 19 18 8 40 40 H 1.09001 * 109.50651 * 297.54122 * 21 20 19 41 41 H 1.08998 * 109.50851 * 57.67038 * 21 20 19 42 42 H 1.08998 * 109.50425 * 296.90965 * 22 21 20 43 43 H 1.09006 * 109.54376 * 176.80845 * 22 21 20 44 44 H 1.08995 * 109.50454 * 298.73894 * 24 23 22 45 45 H 1.08998 * 109.53933 * 178.62373 * 24 23 22 46 46 H 1.09002 * 109.51075 * 302.33434 * 25 20 19 47 47 H 1.09005 * 109.50242 * 62.41433 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.0995 1.7870 1.3425 5 6 0.8330 1.9956 1.9706 6 6 3.3898 1.2410 -0.6032 7 8 4.3505 1.6076 0.0398 8 7 3.5552 0.7812 -1.8594 9 6 2.4123 0.2364 -2.5963 10 6 1.7170 1.3483 -3.3388 11 1 2.0890 2.3598 -3.2684 12 6 0.6054 1.0745 -4.1072 13 7 -0.0016 2.0450 -4.7547 14 14 -0.0384 -0.6748 -4.2284 15 1 -1.0319 -0.9125 -3.1506 16 1 -0.6850 -0.8738 -5.5504 17 1 1.0900 -1.6289 -4.0806 18 6 4.8779 0.8264 -2.4876 19 6 5.6298 -0.4717 -2.1871 20 7 6.9558 -0.4267 -2.8176 21 6 6.8426 -0.4272 -4.2833 22 6 8.2407 -0.3195 -4.8979 23 8 9.0514 -1.3950 -4.4172 24 6 9.1838 -1.4244 -2.9934 25 6 7.7952 -1.5433 -2.3596 26 1 -0.3632 0.6037 0.8317 27 1 -0.3633 0.4185 -0.9387 28 1 -0.3634 -1.0221 0.1070 29 1 1.3879 1.9803 -0.5875 30 1 0.1985 2.5958 1.3184 31 1 0.3563 1.0330 2.1556 32 1 0.9780 2.5170 2.9166 33 1 2.7619 -0.5121 -3.3073 34 1 1.7152 -0.2248 -1.8967 35 1 -0.7834 1.8524 -5.2955 36 1 4.7643 0.9392 -3.5658 37 1 5.4398 1.6720 -2.0911 38 1 5.7434 -0.5845 -1.1089 39 1 5.0678 -1.3173 -2.5837 40 1 6.3711 -1.3535 -4.6117 41 1 6.2385 0.4222 -4.6021 42 1 8.6911 0.6313 -4.6131 43 1 8.1670 -0.3765 -5.9840 44 1 9.6616 -0.5058 -2.6533 45 1 9.7917 -2.2807 -2.7014 46 1 7.8865 -1.5087 -1.2740 47 1 7.3385 -2.4875 -2.6565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692627181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:41 Heat of formation + Delta-G solvation = -165.018501 kcal Electronic energy + Delta-G solvation = -28606.669811 eV Core-core repulsion = 24597.171000 eV Total energy + Delta-G solvation = -4009.498811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49441 -40.53829 -39.51606 -37.67139 -37.08445 -36.27516 -34.58688 -32.24938 -31.66057 -30.27231 -29.41818 -27.54295 -26.92436 -26.08067 -25.03156 -24.43894 -23.29958 -21.38393 -20.57539 -19.17613 -18.88318 -18.39236 -18.12781 -17.70043 -17.13514 -16.89146 -16.44395 -16.32129 -16.05610 -15.95623 -15.69723 -15.45655 -15.15678 -15.13033 -14.76124 -14.63071 -14.51190 -14.23982 -13.80990 -13.63389 -13.38241 -13.21308 -13.17233 -12.91874 -12.56846 -12.47459 -12.34064 -12.30779 -12.14361 -11.88070 -11.72582 -11.47241 -11.11290 -11.00227 -10.82724 -10.74169 -10.64913 -9.64758 -9.43525 -8.32381 -6.39469 1.23979 1.34964 1.39629 1.48049 1.67748 2.31221 2.60411 2.80117 2.92433 3.00033 3.05438 3.52634 3.77763 3.80498 3.90962 3.97506 4.06509 4.18950 4.20079 4.30169 4.35483 4.36248 4.41726 4.44684 4.49276 4.57336 4.64779 4.68689 4.71156 4.73465 4.80535 4.84087 4.87131 4.89542 4.99743 5.01189 5.40877 5.51689 5.76764 5.82447 5.90148 5.91908 6.10068 6.16214 6.43366 6.64845 7.03622 7.26235 8.83189 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.004565 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.319241 B = 6132.502299 C = 7762.551113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.390 6.390 3 C 0.245 3.755 4 O -0.397 6.397 5 C 0.011 3.989 6 C 0.531 3.469 7 O -0.560 6.560 8 N -0.579 5.579 9 C 0.201 3.799 10 C -0.543 4.543 11 H 0.034 0.966 12 C 0.031 3.969 13 N -0.936 5.936 14 Si 0.925 3.075 15 H -0.249 1.249 16 H -0.286 1.286 17 H -0.248 1.248 18 C 0.127 3.873 19 C 0.060 3.940 20 N -0.540 5.540 21 C 0.010 3.990 22 C 0.067 3.933 23 O -0.402 6.402 24 C 0.066 3.934 25 C 0.017 3.983 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.269 0.731 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.120 0.880 46 H 0.092 0.908 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 -7.925 5.690 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.311 6.311 3 C 0.147 3.853 4 O -0.317 6.317 5 C -0.084 4.084 6 C 0.317 3.683 7 O -0.440 6.440 8 N -0.310 5.310 9 C 0.080 3.920 10 C -0.581 4.581 11 H 0.053 0.947 12 C -0.169 4.169 13 N -0.575 5.575 14 Si 0.748 3.252 15 H -0.173 1.173 16 H -0.212 1.212 17 H -0.172 1.172 18 C 0.005 3.995 19 C -0.069 4.069 20 N -0.266 5.266 21 C -0.118 4.118 22 C -0.010 4.010 23 O -0.321 6.321 24 C -0.011 4.011 25 C -0.111 4.111 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.138 0.862 46 H 0.111 0.889 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.751 -7.528 6.006 12.362 hybrid contribution -1.764 -0.527 -0.621 1.943 sum 5.986 -8.055 5.385 11.389 Atomic orbital electron populations 1.23541 0.78797 1.05390 1.01869 1.87970 1.22391 1.27278 1.93421 1.22771 0.92530 0.85238 0.84803 1.88067 1.31875 1.84406 1.27385 1.23358 0.84475 1.01652 0.98929 1.19843 0.89071 0.77382 0.82002 1.90632 1.41545 1.49934 1.61880 1.47767 1.10655 1.59389 1.13213 1.20069 0.84934 0.94140 0.92895 1.21464 1.12367 0.94634 1.29652 0.94747 1.25607 0.96171 1.01060 0.94084 1.70030 1.21386 1.34466 1.31600 0.86051 0.80169 0.80393 0.78576 1.17332 1.21190 1.17180 1.21320 0.81910 0.98214 0.98091 1.22219 0.88733 0.96578 0.99384 1.62118 1.12982 1.44714 1.06799 1.22940 0.99413 1.01888 0.87550 1.22741 0.88225 0.90293 0.99694 1.87942 1.70570 1.51279 1.22311 1.22781 0.94796 1.03576 0.79914 1.22863 0.94928 0.91697 1.01587 0.90532 0.93916 0.86821 0.89764 0.92813 0.91490 0.87072 0.94226 0.91330 0.92155 0.89907 0.90894 0.91322 0.94626 0.94319 0.89298 0.91840 0.86636 0.91927 0.86210 0.88928 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 10.06 113.37 1.14 1.11 16 2 O -0.39 -14.04 8.07 -126.21 -1.02 -15.06 16 3 C 0.25 9.70 2.56 71.24 0.18 9.89 16 4 O -0.40 -14.82 10.16 -119.30 -1.21 -16.03 16 5 C 0.01 0.28 9.52 113.37 1.08 1.36 16 6 C 0.53 23.43 7.43 87.66 0.65 24.09 16 7 O -0.56 -26.94 16.13 15.99 0.26 -26.69 16 8 N -0.58 -24.33 2.46 -826.17 -2.03 -26.36 16 9 C 0.20 8.74 3.97 85.64 0.34 9.08 16 10 C -0.54 -27.99 9.66 25.60 0.25 -27.74 16 11 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 12 C 0.03 1.59 5.47 84.66 0.46 2.05 16 13 N -0.94 -53.15 13.96 21.45 0.30 -52.85 16 14 Si 0.93 38.35 27.47 68.60 1.88 40.23 16 15 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 16 H -0.29 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.25 -9.63 6.54 99.48 0.65 -8.98 16 18 C 0.13 4.73 5.30 86.38 0.46 5.19 16 19 C 0.06 1.92 5.28 86.30 0.46 2.38 16 20 N -0.54 -14.94 4.73 -895.24 -4.23 -19.17 16 21 C 0.01 0.26 5.44 86.31 0.47 0.73 16 22 C 0.07 1.45 7.01 72.01 0.50 1.95 16 23 O -0.40 -9.46 10.83 -148.98 -1.61 -11.07 16 24 C 0.07 1.30 7.01 72.02 0.50 1.81 16 25 C 0.02 0.40 5.64 86.31 0.49 0.88 16 26 H 0.08 1.75 4.46 -2.38 -0.01 1.74 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.09 3.48 7.56 -2.39 -0.02 3.46 16 30 H 0.05 1.27 7.93 -2.39 -0.02 1.25 16 31 H 0.07 1.47 5.96 -2.39 -0.01 1.45 16 32 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.04 1.68 7.12 -2.39 -0.02 1.66 16 34 H 0.07 2.90 4.13 -2.39 -0.01 2.89 16 35 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.08 3.02 6.45 -2.39 -0.02 3.00 16 37 H 0.07 2.87 7.50 -2.39 -0.02 2.85 16 38 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 39 H 0.04 1.15 8.12 -2.38 -0.02 1.13 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 2.31 6.38 -2.39 -0.02 2.29 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 47 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -67.58 370.29 0.22 -67.36 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.90 Total: 26.87 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 6.98 Total: 32.77 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -5.96 Total: -98.38 kcal Atomic # 8 Polarization: -65.27 SS G_CDS: -3.59 Total: -68.85 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.88 Total: 40.23 kcal Total: -67.58 0.22 -67.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692627181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.655 kcal (2) G-P(sol) polarization free energy of solvation -67.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds