Wall clock time and date at job start Fri Apr 10 2020 18:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86804 * 119.99729 * 2 1 4 4 H 1.48503 * 109.46847 * 269.99548 * 3 2 1 5 5 H 1.48493 * 109.47390 * 30.00034 * 3 2 1 6 6 H 1.48502 * 109.46913 * 150.00161 * 3 2 1 7 7 C 1.38796 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99929 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99977 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47427 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99425 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.39081 * 119.99664 * 179.97438 * 13 11 10 15 15 N 1.29881 * 125.65282 * 0.02584 * 14 13 11 16 16 N 1.26249 * 117.66246 * 179.97438 * 15 14 13 17 17 C 1.29524 * 116.57808 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.14454 * 179.74061 * 17 16 15 19 19 C 1.52997 * 109.47321 * 90.02512 * 18 17 16 20 20 C 1.50700 * 109.47321 * 179.97438 * 19 18 17 21 21 O 1.20835 * 119.99632 * 359.97438 * 20 19 18 22 22 O 1.34225 * 120.00398 * 180.02562 * 20 19 18 23 23 S 1.71312 * 125.64885 * 180.02562 * 14 13 11 24 24 H 0.97002 * 120.00219 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47450 * 59.99839 * 10 9 7 26 26 H 1.09006 * 109.47062 * 300.00172 * 10 9 7 27 27 H 0.96997 * 120.00641 * 359.97438 * 13 11 10 28 28 H 1.09005 * 109.46818 * 210.02047 * 18 17 16 29 29 H 1.08999 * 109.47358 * 330.02027 * 18 17 16 30 30 H 1.09005 * 109.46795 * 299.99549 * 19 18 17 31 31 H 1.08991 * 109.47588 * 59.99690 * 19 18 17 32 32 H 0.96702 * 116.99947 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5022 0.0009 13 7 2.8441 -6.3430 0.0022 14 6 2.3564 -7.6455 0.0024 15 7 1.1026 -7.9844 0.0016 16 7 0.8285 -9.2168 0.0014 17 6 1.8334 -10.0339 0.0025 18 6 1.7552 -11.5389 0.0080 19 6 1.7268 -12.0534 -1.4326 20 6 1.6493 -13.5584 -1.4271 21 8 1.6203 -14.1580 -0.3784 22 8 1.6135 -14.2329 -2.5870 23 16 3.3099 -9.0687 0.0036 24 1 -0.4850 0.8400 -0.0004 25 1 3.1238 -3.7310 0.8925 26 1 3.1251 -3.7317 -0.8875 27 1 3.8009 -6.1835 0.0025 28 1 2.6260 -11.9460 0.5220 29 1 0.8484 -11.8538 0.5243 30 1 0.8561 -11.6463 -1.9466 31 1 2.6336 -11.7386 -1.9489 32 1 1.5635 -15.1971 -2.5328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739092636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:50 Heat of formation + Delta-G solvation = -58.259976 kcal Electronic energy + Delta-G solvation = -20002.736432 eV Core-core repulsion = 16410.447565 eV Total energy + Delta-G solvation = -3592.288867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.034 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44999 -40.70110 -39.51089 -36.73860 -35.45384 -34.40920 -32.50691 -30.77065 -29.28350 -27.01036 -25.58533 -24.85008 -22.40871 -21.43233 -20.12750 -19.18998 -18.52951 -17.98158 -17.51549 -17.05668 -16.55327 -16.29383 -16.17711 -14.96583 -14.87298 -14.63423 -14.35350 -13.99737 -13.78173 -13.59419 -13.39202 -12.88538 -12.68919 -12.41840 -12.05622 -11.87582 -11.31743 -11.13457 -11.10848 -11.09396 -10.86599 -10.74767 -10.35479 -9.92848 -9.85221 -9.60291 -9.14197 -8.86732 -8.37079 -6.61641 -6.29157 -4.01983 0.24143 0.33149 0.95699 1.70962 2.30391 2.50356 2.61022 2.92819 3.16160 3.18030 3.25411 3.37883 3.93149 4.11001 4.18980 4.35836 4.50909 4.74003 4.93536 5.00657 5.06272 5.11145 5.35812 5.45249 5.47334 5.64911 5.87388 5.95115 6.01324 6.91498 7.38612 7.52003 8.09260 8.27117 8.55828 9.15946 10.78153 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.051245 B = 0.002059 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.261318 B =13596.743892 C =13810.305267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.075 0.925 9 S -0.051 6.051 10 C -0.150 4.150 11 C 0.521 3.479 12 O -0.439 6.439 13 N -0.631 5.631 14 C 0.250 3.750 15 N -0.272 5.272 16 N -0.213 5.213 17 C -0.011 4.011 18 C -0.020 4.020 19 C -0.112 4.112 20 C 0.484 3.516 21 O -0.515 6.515 22 O -0.516 6.516 23 S 0.096 5.904 24 H 0.270 0.730 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.424 0.576 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 -25.161 -3.151 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.687 4.687 8 H 0.093 0.907 9 S 0.175 5.825 10 C -0.301 4.301 11 C 0.305 3.695 12 O -0.303 6.303 13 N -0.284 5.284 14 C -0.120 4.120 15 N -0.117 5.117 16 N -0.049 5.049 17 C -0.294 4.294 18 C -0.061 4.061 19 C -0.151 4.151 20 C 0.326 3.674 21 O -0.403 6.403 22 O -0.328 6.328 23 S 0.335 5.665 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.262 0.738 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 8.632 -24.824 -2.871 26.438 hybrid contribution 2.479 0.845 0.025 2.619 sum 11.112 -23.979 -2.846 26.581 Atomic orbital electron populations 1.70010 1.05978 1.27670 1.46386 1.25009 0.95055 0.99119 0.94367 0.86135 0.79373 0.81401 0.78395 1.20211 1.20691 1.19654 1.22839 0.94941 0.91378 1.59550 0.90705 1.85562 1.03845 0.96306 1.96777 1.23556 1.07436 0.93381 1.05702 1.20924 0.86780 0.85838 0.75949 1.90869 1.14414 1.84094 1.40898 1.43478 1.11635 1.00305 1.73020 1.26107 0.92718 0.92470 1.00742 1.71607 1.12539 1.07352 1.20221 1.71455 1.26906 0.95285 1.11266 1.29572 0.88736 1.01816 1.09257 1.19859 1.06557 0.83805 0.95927 1.21360 1.07178 0.87543 0.99052 1.23287 0.71587 0.91473 0.81004 1.90761 1.45718 1.70801 1.32988 1.84533 1.85315 1.27030 1.35918 1.84680 1.11625 0.98280 1.71919 0.92023 0.88373 0.88380 0.73767 0.88210 0.87075 0.86421 0.87031 0.72834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.05 -1.34 20.57 -107.50 -2.21 -3.55 16 10 C -0.15 -2.77 6.16 36.01 0.22 -2.55 16 11 C 0.52 9.37 7.81 -10.99 -0.09 9.28 16 12 O -0.44 -10.01 14.54 5.56 0.08 -9.92 16 13 N -0.63 -8.21 5.41 -12.92 -0.07 -8.28 16 14 C 0.25 3.43 8.14 -87.06 -0.71 2.72 16 15 N -0.27 -4.72 9.74 29.97 0.29 -4.43 16 16 N -0.21 -3.14 11.65 33.58 0.39 -2.75 16 17 C -0.01 -0.11 7.05 -13.25 -0.09 -0.21 16 18 C -0.02 -0.14 5.13 -27.88 -0.14 -0.28 16 19 C -0.11 -0.61 5.79 -27.88 -0.16 -0.78 16 20 C 0.48 3.14 8.33 36.01 0.30 3.44 16 21 O -0.51 -4.88 16.74 -18.76 -0.31 -5.20 16 22 O -0.52 -2.45 13.42 -39.24 -0.53 -2.98 16 23 S 0.10 0.84 23.31 -107.50 -2.51 -1.66 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.10 1.61 8.14 -51.91 -0.42 1.19 16 26 H 0.10 1.60 8.14 -51.91 -0.42 1.18 16 27 H 0.42 3.53 8.82 -40.82 -0.36 3.17 16 28 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 29 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 30 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.41 0.33 9.10 45.56 0.41 0.75 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -38.62 325.69 -6.74 -45.36 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -2.02 Total: -1.55 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.47 Total: -0.90 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 1.35 Total: -40.34 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.76 Total: -18.10 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -4.72 Total: -5.22 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -38.62 -6.74 -45.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739092636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.898 kcal (2) G-P(sol) polarization free energy of solvation -38.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds