Wall clock time and date at job start Fri Apr 10 2020 18:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86804 * 119.99729 * 2 1 4 4 H 1.48503 * 109.46847 * 269.99548 * 3 2 1 5 5 H 1.48493 * 109.47390 * 30.00034 * 3 2 1 6 6 H 1.48502 * 109.46913 * 150.00161 * 3 2 1 7 7 C 1.38796 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99929 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99977 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47427 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99425 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.39081 * 119.99664 * 179.97438 * 13 11 10 15 15 N 1.29881 * 125.65282 * 0.02584 * 14 13 11 16 16 N 1.26249 * 117.66246 * 179.97438 * 15 14 13 17 17 C 1.29524 * 116.57808 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.14454 * 179.74061 * 17 16 15 19 19 C 1.52997 * 109.47321 * 90.02512 * 18 17 16 20 20 C 1.50700 * 109.47321 * 179.97438 * 19 18 17 21 21 O 1.20835 * 119.99632 * 359.97438 * 20 19 18 22 22 O 1.34225 * 120.00398 * 180.02562 * 20 19 18 23 23 S 1.71312 * 125.64885 * 180.02562 * 14 13 11 24 24 H 0.97002 * 120.00219 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47450 * 59.99839 * 10 9 7 26 26 H 1.09006 * 109.47062 * 300.00172 * 10 9 7 27 27 H 0.96997 * 120.00641 * 359.97438 * 13 11 10 28 28 H 1.09005 * 109.46818 * 210.02047 * 18 17 16 29 29 H 1.08999 * 109.47358 * 330.02027 * 18 17 16 30 30 H 1.09005 * 109.46795 * 299.99549 * 19 18 17 31 31 H 1.08991 * 109.47588 * 59.99690 * 19 18 17 32 32 H 0.96702 * 116.99947 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5022 0.0009 13 7 2.8441 -6.3430 0.0022 14 6 2.3564 -7.6455 0.0024 15 7 1.1026 -7.9844 0.0016 16 7 0.8285 -9.2168 0.0014 17 6 1.8334 -10.0339 0.0025 18 6 1.7552 -11.5389 0.0080 19 6 1.7268 -12.0534 -1.4326 20 6 1.6493 -13.5584 -1.4271 21 8 1.6203 -14.1580 -0.3784 22 8 1.6135 -14.2329 -2.5870 23 16 3.3099 -9.0687 0.0036 24 1 -0.4850 0.8400 -0.0004 25 1 3.1238 -3.7310 0.8925 26 1 3.1251 -3.7317 -0.8875 27 1 3.8009 -6.1835 0.0025 28 1 2.6260 -11.9460 0.5220 29 1 0.8484 -11.8538 0.5243 30 1 0.8561 -11.6463 -1.9466 31 1 2.6336 -11.7386 -1.9489 32 1 1.5635 -15.1971 -2.5328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739092636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:50 Heat of formation + Delta-G solvation = -88.730445 kcal Electronic energy + Delta-G solvation = -20004.057730 eV Core-core repulsion = 16410.447565 eV Total energy + Delta-G solvation = -3593.610166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.034 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.47517 -41.22946 -40.79979 -37.21879 -36.58138 -35.17268 -34.58639 -31.93889 -30.42795 -27.95922 -27.58663 -25.70959 -23.45033 -22.01599 -21.12600 -20.39960 -19.57681 -19.10722 -18.58613 -17.85309 -17.50839 -17.24005 -17.06971 -16.87952 -16.20377 -16.14179 -15.26330 -15.12029 -14.69999 -14.49427 -14.43614 -14.19674 -13.85201 -13.33852 -13.17735 -12.89284 -12.63531 -12.54357 -12.48567 -12.38134 -11.81246 -11.74561 -11.64733 -11.38191 -11.14344 -10.84066 -10.63498 -10.29882 -9.93968 -8.69578 -8.34938 -6.14116 -0.66745 -0.54821 0.07167 1.17537 1.21814 1.22298 1.43085 1.43780 1.55636 1.70985 1.84681 2.13778 2.25741 2.99937 3.01092 3.28219 3.52874 3.67116 3.89393 4.02863 4.18375 4.23701 4.44092 4.48605 4.59316 4.77970 4.85395 4.94365 5.42654 5.65399 5.89329 6.19915 6.82671 7.01155 7.06623 7.60884 8.74159 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.051245 B = 0.002059 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.261318 B =13596.743892 C =13810.305267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.090 0.910 9 S -0.152 6.152 10 C -0.123 4.123 11 C 0.529 3.471 12 O -0.498 6.498 13 N -0.610 5.610 14 C 0.209 3.791 15 N -0.328 5.328 16 N -0.260 5.260 17 C -0.001 4.001 18 C -0.021 4.021 19 C -0.109 4.109 20 C 0.493 3.507 21 O -0.549 6.549 22 O -0.514 6.514 23 S 0.215 5.785 24 H 0.271 0.729 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.447 0.553 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.882 -26.418 -3.584 30.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.691 4.691 8 H 0.108 0.892 9 S 0.075 5.925 10 C -0.274 4.274 11 C 0.313 3.687 12 O -0.367 6.367 13 N -0.266 5.266 14 C -0.160 4.160 15 N -0.172 5.172 16 N -0.096 5.096 17 C -0.283 4.283 18 C -0.062 4.062 19 C -0.148 4.148 20 C 0.337 3.663 21 O -0.440 6.440 22 O -0.328 6.328 23 S 0.456 5.544 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.290 0.710 28 H 0.140 0.860 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.154 0.846 32 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 12.452 -26.143 -3.323 29.147 hybrid contribution 1.435 0.900 0.126 1.698 sum 13.886 -25.243 -3.197 28.987 Atomic orbital electron populations 1.70192 1.08075 1.28636 1.47994 1.26159 0.95942 1.03457 0.93767 0.84928 0.78238 0.75900 0.78758 1.19352 1.20653 1.17876 1.23207 0.95544 0.91533 1.58831 0.89226 1.85807 1.10060 0.99478 1.97128 1.23349 1.04080 0.91682 1.08302 1.20695 0.86325 0.86566 0.75122 1.90859 1.16912 1.84966 1.43941 1.42883 1.12047 0.99511 1.72191 1.26280 0.93742 0.93846 1.02180 1.71558 1.15389 1.09044 1.21252 1.71436 1.28804 0.95092 1.14248 1.30245 0.89460 1.03101 1.05517 1.20024 1.07267 0.81631 0.97313 1.21343 1.08400 0.87043 0.98043 1.23326 0.70542 0.91701 0.80760 1.90758 1.47522 1.71534 1.34153 1.84496 1.84699 1.28648 1.34953 1.84224 1.07580 0.93317 1.69275 0.92039 0.85647 0.85546 0.71018 0.86048 0.87853 0.86498 0.84599 0.70832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.57 13.22 21.65 0.29 -55.29 16 2 C 0.01 0.64 5.49 84.86 0.47 1.10 16 3 Si 1.00 42.55 29.55 68.60 2.03 44.58 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 7 C -0.54 -29.88 9.50 67.95 0.65 -29.23 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.17 20.57 -56.49 -1.16 -9.34 16 10 C -0.12 -4.42 6.16 71.24 0.44 -3.98 16 11 C 0.53 18.96 7.81 87.66 0.68 19.64 16 12 O -0.50 -23.72 14.54 -3.03 -0.04 -23.76 16 13 N -0.61 -14.93 5.41 -313.17 -1.69 -16.63 16 14 C 0.21 5.50 8.14 179.10 1.46 6.96 16 15 N -0.33 -11.54 9.74 -59.09 -0.58 -12.12 16 16 N -0.26 -7.70 11.65 -47.67 -0.56 -8.26 16 17 C 0.00 -0.01 7.05 88.45 0.62 0.61 16 18 C -0.02 -0.24 5.13 29.85 0.15 -0.09 16 19 C -0.11 -0.93 5.79 29.85 0.17 -0.76 16 20 C 0.49 5.40 8.33 71.24 0.59 5.99 16 21 O -0.55 -9.60 16.74 21.94 0.37 -9.23 16 22 O -0.51 -3.72 13.42 -51.37 -0.69 -4.41 16 23 S 0.22 3.06 23.31 -56.49 -1.32 1.74 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.13 3.85 8.14 -2.39 -0.02 3.83 16 26 H 0.13 3.85 8.14 -2.39 -0.02 3.83 16 27 H 0.45 6.05 8.82 -92.71 -0.82 5.23 16 28 H 0.12 0.94 8.10 -2.38 -0.02 0.92 16 29 H 0.10 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.43 -0.21 9.10 -74.06 -0.67 -0.88 16 Total: -1.00 -89.83 325.69 1.60 -88.23 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -0.28 Total: 4.24 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.24 Total: 0.25 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -2.54 Total: -92.29 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.37 Total: -37.41 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -2.48 Total: -7.60 kcal Total: -89.83 1.60 -88.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739092636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.504 kcal (2) G-P(sol) polarization free energy of solvation -89.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds