Wall clock time and date at job start Fri Apr 10 2020 18:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47030 * 239.99769 * 3 2 1 5 5 H 1.48497 * 109.47473 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47444 * 120.00216 * 3 2 1 7 7 C 1.38950 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99751 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00195 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00300 * 359.97438 * 10 9 7 12 12 C 1.50710 * 120.00000 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46792 * 179.97438 * 12 10 9 14 14 C 1.34783 * 119.99607 * 179.97438 * 13 12 10 15 15 O 1.21566 * 119.99688 * 0.02562 * 14 13 12 16 16 C 1.47700 * 120.00029 * 179.97438 * 14 13 12 17 17 C 1.40086 * 120.55319 * 0.24213 * 16 14 13 18 18 C 1.38243 * 118.31933 * 180.26049 * 17 16 14 19 19 C 1.38554 * 119.33209 * 359.74695 * 18 17 16 20 20 Cl 1.73605 * 119.46118 * 179.97438 * 19 18 17 21 21 N 1.32027 * 121.07516 * 0.02562 * 19 18 17 22 22 C 1.31827 * 121.84169 * 359.97438 * 21 19 18 23 23 Cl 1.73599 * 119.73007 * 179.97438 * 22 21 19 24 24 H 0.97000 * 119.99945 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99955 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.47184 * 59.99565 * 12 10 9 27 27 H 1.08997 * 109.46836 * 299.99525 * 12 10 9 28 28 H 0.96995 * 120.00694 * 359.97438 * 13 12 10 29 29 H 1.08004 * 120.84082 * 0.02562 * 17 16 14 30 30 H 1.08002 * 120.33496 * 179.76667 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1958 -5.9765 -0.0005 14 6 1.7466 -7.2472 -0.0006 15 8 0.5514 -7.4693 -0.0007 16 6 2.7064 -8.3698 -0.0017 17 6 4.0860 -8.1272 0.0025 18 6 4.9427 -9.2121 -0.0043 19 6 4.4154 -10.4934 -0.0095 20 17 5.4882 -11.8583 -0.0186 21 7 3.1103 -10.6931 -0.0086 22 6 2.2534 -9.6914 -0.0023 23 17 0.5482 -10.0171 -0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6174 -4.9206 -0.8902 27 1 0.6169 -4.9210 0.8897 28 1 3.1495 -5.7993 -0.0008 29 1 4.4707 -7.1180 0.0069 30 1 6.0124 -9.0625 -0.0052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809064904.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:31 Heat of formation + Delta-G solvation = -40.055574 kcal Electronic energy + Delta-G solvation = -20497.394657 eV Core-core repulsion = 16765.974685 eV Total energy + Delta-G solvation = -3731.419972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.012 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03099 -39.36528 -38.16565 -37.20557 -36.74597 -34.67591 -33.95088 -33.17443 -31.57290 -31.40044 -27.94354 -25.18181 -24.43818 -23.88637 -20.82656 -19.80689 -18.63686 -18.08480 -17.70126 -17.35017 -15.86039 -15.76659 -15.41887 -15.22848 -15.03413 -14.71850 -14.36040 -13.96199 -13.88549 -13.60133 -13.09395 -12.70173 -12.29711 -12.05008 -11.89838 -11.69611 -11.56672 -11.43360 -11.15957 -10.56358 -10.54889 -10.45856 -10.37522 -9.69823 -9.65866 -9.37922 -8.95982 -8.73726 -8.17913 -6.58173 -4.00652 -0.05761 0.47551 1.05547 1.66643 2.49378 2.97630 3.08539 3.17784 3.21607 3.28186 3.65346 3.98051 4.04749 4.19803 4.25158 4.47234 4.64531 4.76453 5.10220 5.22653 5.28191 5.61080 5.79658 5.84568 5.95939 6.43789 6.88435 7.39310 7.52390 7.83567 8.14880 8.36719 8.97092 9.30945 9.78048 10.58390 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.002608 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.332457 B =10733.191377 C =11838.366295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.426 3.574 11 O -0.600 6.600 12 C 0.110 3.890 13 N -0.697 5.697 14 C 0.555 3.445 15 O -0.516 6.516 16 C -0.163 4.163 17 C -0.016 4.016 18 C -0.158 4.158 19 C 0.209 3.791 20 Cl -0.014 7.014 21 N -0.479 5.479 22 C 0.239 3.761 23 Cl 0.025 6.975 24 H 0.276 0.724 25 H 0.397 0.603 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.409 0.591 29 H 0.165 0.835 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -18.333 0.000 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.123 0.877 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.487 6.487 12 C -0.018 4.018 13 N -0.352 5.352 14 C 0.339 3.661 15 O -0.392 6.392 16 C -0.170 4.170 17 C -0.042 4.042 18 C -0.178 4.178 19 C 0.044 3.956 20 Cl 0.015 6.985 21 N -0.193 5.193 22 C 0.073 3.927 23 Cl 0.054 6.946 24 H 0.086 0.914 25 H 0.230 0.770 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.248 0.752 29 H 0.183 0.817 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.422 -19.269 -0.006 20.311 hybrid contribution 0.524 1.493 0.002 1.583 sum 6.946 -17.776 -0.004 19.085 Atomic orbital electron populations 1.69602 1.06040 1.28776 1.48847 1.25340 0.95672 1.00004 0.96606 0.85863 0.78798 0.80073 0.79190 1.19734 1.20811 1.19727 1.19680 0.93449 0.81948 1.48589 0.87662 1.41785 1.09539 1.04467 1.62186 1.19674 0.88270 0.84936 0.85993 1.90485 1.13680 1.86790 1.57757 1.21019 0.91660 0.85361 1.03718 1.45562 1.11769 1.04312 1.73562 1.17626 0.87834 0.82359 0.78261 1.90882 1.15153 1.84274 1.48920 1.20757 0.94976 0.94007 1.07236 1.21964 0.90878 1.00825 0.90527 1.21904 1.02810 0.90223 1.02912 1.21729 0.88394 0.88751 0.96724 1.98440 1.59915 1.44105 1.96060 1.66420 1.02185 1.35658 1.15016 1.21616 0.89300 0.87424 0.94316 1.98484 1.04951 1.95820 1.95295 0.91430 0.76962 0.89372 0.89367 0.75203 0.81725 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.16 13.05 55.50 0.72 -22.44 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 19.91 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.31 -8.03 9.68 -14.93 -0.14 -8.18 16 8 H 0.11 2.85 7.16 -52.48 -0.38 2.48 16 9 N -0.55 -12.88 5.29 -10.96 -0.06 -12.94 16 10 C 0.43 9.11 7.85 -10.98 -0.09 9.03 16 11 O -0.60 -14.28 15.24 5.55 0.08 -14.20 16 12 C 0.11 1.84 6.15 -5.19 -0.03 1.81 16 13 N -0.70 -10.39 5.48 -62.47 -0.34 -10.73 16 14 C 0.55 8.12 7.77 -12.39 -0.10 8.03 16 15 O -0.52 -8.74 13.99 5.31 0.07 -8.67 16 16 C -0.16 -2.00 5.89 -104.79 -0.62 -2.62 16 17 C -0.02 -0.14 9.64 -38.89 -0.37 -0.52 16 18 C -0.16 -1.27 9.86 -39.46 -0.39 -1.66 16 19 C 0.21 2.10 7.27 -17.35 -0.13 1.98 16 20 Cl -0.01 -0.12 29.10 -51.86 -1.51 -1.63 16 21 N -0.48 -5.93 10.30 -7.14 -0.07 -6.01 16 22 C 0.24 3.11 7.31 -17.01 -0.12 2.99 16 23 Cl 0.03 0.34 26.19 -51.86 -1.36 -1.01 16 24 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 25 H 0.40 9.01 7.90 -40.82 -0.32 8.69 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.41 5.73 5.54 -40.82 -0.23 5.50 16 29 H 0.17 1.21 6.52 -52.48 -0.34 0.87 16 30 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 306.22 15.07 4.61 4.61 Total: -1.00 -29.94 306.22 -6.62 -36.57 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -1.67 Total: 10.10 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -2.09 Total: 11.45 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.25 Total: -52.11 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.16 Total: -22.86 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -2.87 Total: -2.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.94 -6.62 -36.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809064904.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.488 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds