Wall clock time and date at job start Fri Apr 10 2020 18:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47030 * 239.99769 * 3 2 1 5 5 H 1.48497 * 109.47473 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47444 * 120.00216 * 3 2 1 7 7 C 1.38950 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99751 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00195 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00300 * 359.97438 * 10 9 7 12 12 C 1.50710 * 120.00000 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46792 * 179.97438 * 12 10 9 14 14 C 1.34783 * 119.99607 * 179.97438 * 13 12 10 15 15 O 1.21566 * 119.99688 * 0.02562 * 14 13 12 16 16 C 1.47700 * 120.00029 * 179.97438 * 14 13 12 17 17 C 1.40086 * 120.55319 * 0.24213 * 16 14 13 18 18 C 1.38243 * 118.31933 * 180.26049 * 17 16 14 19 19 C 1.38554 * 119.33209 * 359.74695 * 18 17 16 20 20 Cl 1.73605 * 119.46118 * 179.97438 * 19 18 17 21 21 N 1.32027 * 121.07516 * 0.02562 * 19 18 17 22 22 C 1.31827 * 121.84169 * 359.97438 * 21 19 18 23 23 Cl 1.73599 * 119.73007 * 179.97438 * 22 21 19 24 24 H 0.97000 * 119.99945 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99955 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.47184 * 59.99565 * 12 10 9 27 27 H 1.08997 * 109.46836 * 299.99525 * 12 10 9 28 28 H 0.96995 * 120.00694 * 359.97438 * 13 12 10 29 29 H 1.08004 * 120.84082 * 0.02562 * 17 16 14 30 30 H 1.08002 * 120.33496 * 179.76667 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1958 -5.9765 -0.0005 14 6 1.7466 -7.2472 -0.0006 15 8 0.5514 -7.4693 -0.0007 16 6 2.7064 -8.3698 -0.0017 17 6 4.0860 -8.1272 0.0025 18 6 4.9427 -9.2121 -0.0043 19 6 4.4154 -10.4934 -0.0095 20 17 5.4882 -11.8583 -0.0186 21 7 3.1103 -10.6931 -0.0086 22 6 2.2534 -9.6914 -0.0023 23 17 0.5482 -10.0171 -0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6174 -4.9206 -0.8902 27 1 0.6169 -4.9210 0.8897 28 1 3.1495 -5.7993 -0.0008 29 1 4.4707 -7.1180 0.0069 30 1 6.0124 -9.0625 -0.0052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809064904.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:30 Heat of formation + Delta-G solvation = -61.645068 kcal Electronic energy + Delta-G solvation = -20498.330848 eV Core-core repulsion = 16765.974685 eV Total energy + Delta-G solvation = -3732.356163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.96253 -40.65505 -39.72687 -38.01236 -37.64331 -36.26564 -35.45981 -34.12528 -33.34253 -32.37735 -29.38385 -26.70368 -25.53416 -24.85969 -21.98068 -21.40717 -20.14776 -19.49218 -18.63078 -18.37649 -17.39636 -16.91689 -16.67447 -16.50586 -16.17443 -16.06283 -15.81980 -15.28461 -15.22585 -14.66630 -14.10537 -13.84325 -13.71471 -13.52042 -13.41902 -12.87940 -12.68795 -12.44692 -12.40426 -12.37366 -12.12809 -11.53639 -11.44324 -11.30247 -10.75215 -10.53720 -10.36054 -10.10870 -10.04785 -8.49159 -5.99061 -0.92625 -0.31078 0.25269 0.78957 1.39708 1.44789 1.51042 1.54987 1.80287 1.93113 2.31162 2.32561 3.09201 3.18680 3.20560 3.35628 3.38537 3.62504 3.87434 4.22115 4.43006 4.45729 4.50146 4.55337 4.91976 5.15569 5.40362 5.93420 6.04086 6.35893 6.50118 6.98635 7.05629 7.46656 7.95953 8.67376 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.002608 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.332457 B =10733.191377 C =11838.366295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.089 0.911 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.122 3.878 13 N -0.695 5.695 14 C 0.559 3.441 15 O -0.542 6.542 16 C -0.175 4.175 17 C -0.005 4.005 18 C -0.138 4.138 19 C 0.201 3.799 20 Cl 0.000 7.000 21 N -0.499 5.499 22 C 0.226 3.774 23 Cl 0.007 6.993 24 H 0.279 0.721 25 H 0.399 0.601 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.415 0.585 29 H 0.187 0.813 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.751 -18.468 0.000 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.107 0.893 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.510 6.510 12 C -0.005 4.005 13 N -0.350 5.350 14 C 0.345 3.655 15 O -0.420 6.420 16 C -0.182 4.182 17 C -0.031 4.031 18 C -0.158 4.158 19 C 0.037 3.963 20 Cl 0.029 6.971 21 N -0.213 5.213 22 C 0.061 3.939 23 Cl 0.036 6.964 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.254 0.746 29 H 0.204 0.796 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 8.159 -19.431 -0.005 21.075 hybrid contribution 0.107 1.388 0.001 1.392 sum 8.266 -18.044 -0.004 19.847 Atomic orbital electron populations 1.69673 1.07023 1.29650 1.49338 1.26108 0.96488 1.02682 0.95872 0.84952 0.77723 0.76359 0.79137 1.19444 1.19936 1.19431 1.19704 0.93024 0.83479 1.50284 0.89326 1.41843 1.09640 1.04640 1.63373 1.20368 0.88147 0.85815 0.83572 1.90463 1.14972 1.87503 1.58039 1.20835 0.91494 0.83403 1.04811 1.45486 1.11679 1.03981 1.73897 1.17892 0.87907 0.82488 0.77232 1.90871 1.16474 1.84604 1.50055 1.20583 0.95834 0.92640 1.09164 1.22232 0.89503 1.02277 0.89130 1.22299 1.04499 0.88734 1.00268 1.22110 0.87900 0.90117 0.96189 1.98449 1.59075 1.43664 1.95908 1.66369 1.03266 1.35788 1.15831 1.21588 0.88831 0.87898 0.95600 1.98470 1.06508 1.95921 1.95517 0.91137 0.76703 0.88267 0.88256 0.74554 0.79583 0.78222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.45 13.05 21.66 0.28 -47.17 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 0.99 40.36 29.55 68.60 2.03 42.39 16 4 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.34 -17.66 9.68 84.04 0.81 -16.85 16 8 H 0.09 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.56 -26.54 5.29 -306.98 -1.62 -28.16 16 10 C 0.43 18.37 7.85 87.66 0.69 19.06 16 11 O -0.62 -29.21 15.24 -3.05 -0.05 -29.26 16 12 C 0.12 3.97 6.15 85.64 0.53 4.50 16 13 N -0.70 -19.74 5.48 -469.83 -2.58 -22.32 16 14 C 0.56 15.81 7.77 86.74 0.67 16.48 16 15 O -0.54 -18.18 13.99 -3.92 -0.05 -18.24 16 16 C -0.18 -4.07 5.89 -19.97 -0.12 -4.19 16 17 C -0.01 -0.09 9.64 22.72 0.22 0.13 16 18 C -0.14 -1.75 9.86 22.35 0.22 -1.53 16 19 C 0.20 3.60 7.27 84.74 0.62 4.21 16 20 Cl 0.00 0.00 29.10 -2.72 -0.08 -0.08 16 21 N -0.50 -11.78 10.30 -176.49 -1.82 -13.60 16 22 C 0.23 5.75 7.31 85.05 0.62 6.37 16 23 Cl 0.01 0.19 26.19 -2.72 -0.07 0.12 16 24 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 25 H 0.40 18.26 7.90 -92.70 -0.73 17.53 16 26 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.41 10.85 5.54 -92.71 -0.51 10.34 16 29 H 0.19 2.09 6.52 -2.91 -0.02 2.07 16 30 H 0.20 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -64.29 306.22 0.77 -63.52 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.00 Total: 24.68 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 4.73 Total: 28.12 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -5.73 Total: -111.25 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.10 Total: -47.50 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.15 Total: 0.04 kcal Total: -64.29 0.77 -63.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809064904.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.871 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds